PDB Chemical Component DHV
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DHV
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.452 |
1.470 |
| CA |
CB |
1.547 |
1.530 |
| CA |
C |
1.524 |
1.507 |
| CB |
CG1 |
1.539 |
1.530 |
| CB |
CG2 |
1.531 |
1.530 |
| CB |
OG3 |
1.415 |
1.429 |
| C |
O |
1.235 |
1.209 |
| C |
OXT |
1.335 |
1.342 |
| N |
H |
1.001 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CA |
HA |
1.100 |
1.090 |
| CG1 |
HG11 |
1.100 |
1.090 |
| CG1 |
HG12 |
1.100 |
1.090 |
| CG1 |
HG13 |
1.100 |
1.090 |
| CG2 |
HG21 |
1.100 |
1.090 |
| CG2 |
HG22 |
1.100 |
1.090 |
| CG2 |
HG23 |
1.100 |
1.089 |
| OG3 |
HOG3 |
0.950 |
0.968 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for DHV
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
CA |
CB |
110.1 |
109.4 |
| N |
CA |
C |
107.6 |
109.5 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| N |
CA |
HA |
112.6 |
109.4 |
| CB |
CA |
C |
115.6 |
109.5 |
| CA |
CB |
CG1 |
110.8 |
109.5 |
| CA |
CB |
CG2 |
111.3 |
109.4 |
| CA |
CB |
OG3 |
110.7 |
109.5 |
| CB |
CA |
HA |
104.1 |
109.5 |
| CA |
C |
O |
118.9 |
120.0 |
| CA |
C |
OXT |
117.6 |
120.0 |
| C |
CA |
HA |
106.8 |
109.5 |
| CG1 |
CB |
CG2 |
107.2 |
109.5 |
| CG1 |
CB |
OG3 |
107.6 |
109.5 |
| CB |
CG1 |
HG11 |
109.5 |
109.5 |
| CB |
CG1 |
HG12 |
109.5 |
109.5 |
| CB |
CG1 |
HG13 |
109.5 |
109.5 |
| CG2 |
CB |
OG3 |
109.0 |
109.5 |
| CB |
CG2 |
HG21 |
109.5 |
109.4 |
| CB |
CG2 |
HG22 |
109.5 |
109.4 |
| CB |
CG2 |
HG23 |
109.4 |
109.5 |
| CB |
OG3 |
HOG3 |
109.5 |
114.0 |
| O |
C |
OXT |
123.5 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| H |
N |
H2 |
109.4 |
111.0 |
| HG11 |
CG1 |
HG12 |
109.5 |
109.4 |
| HG11 |
CG1 |
HG13 |
109.4 |
109.5 |
| HG12 |
CG1 |
HG13 |
109.5 |
109.5 |
| HG21 |
CG2 |
HG22 |
109.5 |
109.5 |
| HG21 |
CG2 |
HG23 |
109.4 |
109.5 |
| HG22 |
CG2 |
HG23 |
109.5 |
109.5 |
Torsion Angles for DHV
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CB |
CA |
N |
C |
126.8 |
120.0 |
| N |
CA |
CB |
CG1 |
65.5 |
60.0 |
| N |
CA |
CB |
CG2 |
184.7 |
180.0 |
| N |
CA |
CB |
OG3 |
306.1 |
299.9 |
| CB |
CA |
N |
HA |
244.3 |
240.0 |
| N |
CA |
C |
O |
71.1 |
20.0 |
| N |
CA |
C |
OXT |
254.8 |
200.0 |
| C |
CA |
N |
HA |
117.5 |
120.0 |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| N |
CA |
CB |
C |
237.8 |
240.0 |
| CB |
CA |
N |
H |
173.1 |
296.1 |
| CB |
CA |
N |
H2 |
293.1 |
60.0 |
| N |
CA |
CB |
HA |
120.9 |
119.9 |
| CB |
CA |
C |
O |
307.6 |
260.0 |
| CB |
CA |
C |
OXT |
131.3 |
80.0 |
| C |
CA |
CB |
HA |
243.2 |
240.0 |
| CG1 |
CB |
CA |
CG2 |
240.8 |
240.0 |
| CG1 |
CB |
CA |
OG3 |
119.3 |
120.0 |
| CA |
CB |
CG1 |
HG11 |
228.1 |
60.0 |
| CA |
CB |
CG1 |
HG12 |
348.1 |
180.0 |
| CA |
CB |
CG1 |
HG13 |
108.1 |
300.0 |
| CG2 |
CB |
CA |
OG3 |
238.6 |
240.0 |
| CA |
CB |
CG2 |
HG21 |
185.3 |
60.0 |
| CA |
CB |
CG2 |
HG22 |
305.3 |
180.0 |
| CA |
CB |
CG2 |
HG23 |
65.3 |
300.0 |
| CA |
CB |
OG3 |
HOG3 |
316.6 |
180.0 |
| N |
CA |
C |
CB |
123.5 |
120.0 |
| C |
CA |
N |
H |
46.4 |
176.1 |
| C |
CA |
N |
H2 |
166.4 |
300.0 |
| N |
CA |
C |
HA |
238.8 |
240.0 |
| C |
CA |
CB |
CG1 |
187.7 |
180.0 |
| C |
CA |
CB |
CG2 |
306.9 |
300.0 |
| C |
CA |
CB |
OG3 |
68.3 |
60.0 |
| CB |
CA |
C |
HA |
115.3 |
120.0 |
| O |
C |
CA |
OXT |
176.3 |
179.9 |
| CA |
C |
OXT |
HXT |
176.1 |
180.0 |
| CG1 |
CB |
CA |
C |
187.7 |
180.0 |
| CA |
CB |
CG1 |
CG2 |
121.6 |
120.0 |
| CA |
CB |
CG1 |
OG3 |
238.8 |
240.0 |
| CG1 |
CB |
CA |
HA |
304.5 |
300.0 |
| CG2 |
CB |
CG1 |
OG3 |
117.2 |
120.0 |
| CG1 |
CB |
CG2 |
HG21 |
306.6 |
180.0 |
| CG1 |
CB |
CG2 |
HG22 |
66.7 |
300.0 |
| CG1 |
CB |
CG2 |
HG23 |
186.6 |
60.0 |
| CG1 |
CB |
OG3 |
HOG3 |
195.4 |
60.0 |
| HG11 |
CG1 |
CB |
HG12 |
240.0 |
240.1 |
| HG11 |
CG1 |
CB |
HG13 |
120.0 |
120.1 |
| HG12 |
CG1 |
CB |
HG13 |
240.0 |
240.0 |
| CG2 |
CB |
CA |
C |
306.9 |
300.0 |
| CA |
CB |
CG2 |
CG1 |
238.7 |
240.0 |
| CA |
CB |
CG2 |
OG3 |
122.4 |
120.0 |
| CG2 |
CB |
CA |
HA |
63.7 |
60.0 |
| CG1 |
CB |
CG2 |
OG3 |
243.8 |
240.0 |
| CG2 |
CB |
CG1 |
HG11 |
106.5 |
300.1 |
| CG2 |
CB |
CG1 |
HG12 |
226.5 |
60.0 |
| CG2 |
CB |
CG1 |
HG13 |
346.5 |
180.0 |
| CG2 |
CB |
OG3 |
HOG3 |
79.4 |
300.0 |
| HG21 |
CG2 |
CB |
HG22 |
240.0 |
240.0 |
| HG21 |
CG2 |
CB |
HG23 |
120.0 |
120.0 |
| HG22 |
CG2 |
CB |
HG23 |
240.0 |
240.0 |
| OG3 |
CB |
CA |
C |
68.3 |
60.0 |
| CA |
CB |
OG3 |
CG1 |
121.3 |
120.0 |
| CA |
CB |
OG3 |
CG2 |
237.3 |
240.0 |
| OG3 |
CB |
CA |
HA |
185.2 |
180.0 |
| CG1 |
CB |
OG3 |
CG2 |
116.0 |
120.0 |
| OG3 |
CB |
CG1 |
HG11 |
349.3 |
180.1 |
| OG3 |
CB |
CG1 |
HG12 |
109.3 |
300.0 |
| OG3 |
CB |
CG1 |
HG13 |
229.3 |
60.0 |
| OG3 |
CB |
CG2 |
HG21 |
62.9 |
300.0 |
| OG3 |
CB |
CG2 |
HG22 |
182.9 |
60.0 |
| OG3 |
CB |
CG2 |
HG23 |
302.9 |
180.0 |
| CA |
C |
O |
OXT |
183.9 |
180.1 |
| O |
C |
CA |
HA |
192.3 |
139.9 |
| O |
C |
OXT |
HXT |
360.0 |
0.0 |
| CA |
C |
OXT |
O |
176.2 |
179.9 |
| OXT |
C |
CA |
HA |
15.9 |
320.0 |
| H |
N |
CA |
CB |
173.1 |
296.1 |
| H |
N |
CA |
C |
46.4 |
176.1 |
| CA |
N |
H |
H2 |
120.0 |
123.9 |
| H |
N |
CA |
HA |
288.9 |
56.0 |
| H2 |
N |
CA |
CB |
293.1 |
60.0 |
| H2 |
N |
CA |
C |
166.4 |
300.0 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |
| H2 |
N |
CA |
HA |
48.9 |
180.0 |
| N |
CA |
HA |
CB |
240.7 |
240.0 |
| N |
CA |
HA |
C |
118.0 |
120.0 |
| HA |
CA |
N |
H |
288.9 |
56.0 |
| HA |
CA |
N |
H2 |
48.9 |
180.0 |
| CB |
CA |
HA |
C |
237.2 |
240.0 |
| HA |
CA |
CB |
CG1 |
304.5 |
300.0 |
| HA |
CA |
CB |
CG2 |
63.7 |
60.0 |
| HA |
CA |
CB |
OG3 |
185.2 |
180.0 |
| HA |
CA |
C |
O |
192.3 |
139.9 |
| HA |
CA |
C |
OXT |
15.9 |
320.0 |
| HG11 |
CG1 |
CB |
CG2 |
106.5 |
300.1 |
| HG11 |
CG1 |
CB |
OG3 |
349.3 |
180.1 |
| CB |
CG1 |
HG11 |
HG12 |
120.0 |
120.0 |
| CB |
CG1 |
HG11 |
HG13 |
240.0 |
240.0 |
| HG12 |
CG1 |
HG11 |
HG13 |
120.0 |
120.0 |
| HG12 |
CG1 |
CB |
CG2 |
226.5 |
60.0 |
| HG12 |
CG1 |
CB |
OG3 |
109.3 |
300.0 |
| CB |
CG1 |
HG12 |
HG11 |
239.9 |
240.0 |
| CB |
CG1 |
HG12 |
HG13 |
120.0 |
120.0 |
| HG11 |
CG1 |
HG12 |
HG13 |
240.1 |
240.0 |
| HG13 |
CG1 |
CB |
CG2 |
346.5 |
180.0 |
| HG13 |
CG1 |
CB |
OG3 |
229.3 |
60.0 |
| CB |
CG1 |
HG13 |
HG11 |
120.0 |
120.0 |
| CB |
CG1 |
HG13 |
HG12 |
240.0 |
240.0 |
| HG11 |
CG1 |
HG13 |
HG12 |
120.0 |
120.0 |
| HG21 |
CG2 |
CB |
OG3 |
62.9 |
300.0 |
| CB |
CG2 |
HG21 |
HG22 |
120.0 |
119.9 |
| CB |
CG2 |
HG21 |
HG23 |
240.0 |
240.0 |
| HG22 |
CG2 |
HG21 |
HG23 |
120.0 |
120.0 |
| HG22 |
CG2 |
CB |
OG3 |
182.9 |
60.0 |
| CB |
CG2 |
HG22 |
HG21 |
239.9 |
240.0 |
| CB |
CG2 |
HG22 |
HG23 |
120.0 |
120.0 |
| HG21 |
CG2 |
HG22 |
HG23 |
240.0 |
239.9 |
| HG23 |
CG2 |
CB |
OG3 |
302.9 |
180.0 |
| CB |
CG2 |
HG23 |
HG21 |
120.0 |
120.0 |
| CB |
CG2 |
HG23 |
HG22 |
240.0 |
240.0 |
| HG21 |
CG2 |
HG23 |
HG22 |
120.0 |
120.0 |