PDB Chemical Component DHI
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DHI
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N |
CA |
1.474 |
1.469 |
N |
H |
1.021 |
1.009 |
N |
H2 |
1.020 |
1.009 |
CA |
C |
1.505 |
1.506 |
CA |
CB |
1.514 |
1.531 |
CA |
HA |
1.115 |
1.090 |
C |
O |
1.221 |
1.342 |
C |
OXT |
1.329 |
1.208 |
CB |
CG |
1.497 |
1.507 |
CB |
HB2 |
1.114 |
1.090 |
CB |
HB3 |
1.115 |
1.089 |
CG |
ND1 |
1.374 |
1.341 |
CG |
CD2 |
1.357 |
1.346 |
ND1 |
CE1 |
1.329 |
1.305 |
ND1 |
HD1 |
1.020 |
0.970 |
CD2 |
NE2 |
1.371 |
1.369 |
CD2 |
HD2 |
1.102 |
1.080 |
CE1 |
NE2 |
1.320 |
1.350 |
CE1 |
HE1 |
1.103 |
1.081 |
NE2 |
HE2 |
1.020 |
0.970 |
OXT |
HXT |
0.950 |
|
Bond Angles for DHI
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
CA |
N |
H |
107.3 |
106.7 |
CA |
N |
H2 |
113.1 |
106.7 |
N |
CA |
C |
107.3 |
109.5 |
N |
CA |
CB |
110.3 |
109.4 |
N |
CA |
HA |
111.2 |
109.5 |
H |
N |
H2 |
113.0 |
106.7 |
C |
CA |
CB |
111.8 |
109.5 |
C |
CA |
HA |
109.7 |
109.5 |
CA |
C |
O |
120.8 |
120.0 |
CA |
C |
OXT |
116.1 |
120.0 |
CB |
CA |
HA |
106.6 |
109.5 |
CA |
CB |
CG |
113.1 |
109.5 |
CA |
CB |
HB2 |
110.9 |
109.5 |
CA |
CB |
HB3 |
110.9 |
109.5 |
O |
C |
OXT |
123.1 |
120.0 |
C |
OXT |
HXT |
116.1 |
|
CG |
CB |
HB2 |
110.9 |
109.4 |
CG |
CB |
HB3 |
110.9 |
109.5 |
CB |
CG |
ND1 |
123.4 |
126.0 |
CB |
CG |
CD2 |
130.1 |
126.0 |
HB2 |
CB |
HB3 |
99.4 |
109.5 |
ND1 |
CG |
CD2 |
106.5 |
108.0 |
CG |
ND1 |
CE1 |
109.1 |
109.2 |
CG |
ND1 |
HD1 |
126.8 |
125.4 |
CG |
CD2 |
NE2 |
106.9 |
106.8 |
CG |
CD2 |
HD2 |
126.1 |
126.6 |
CE1 |
ND1 |
HD1 |
124.1 |
125.4 |
ND1 |
CE1 |
NE2 |
108.3 |
108.7 |
ND1 |
CE1 |
HE1 |
126.1 |
125.6 |
NE2 |
CD2 |
HD2 |
126.9 |
126.6 |
CD2 |
NE2 |
CE1 |
109.2 |
107.2 |
CD2 |
NE2 |
HE2 |
127.0 |
126.4 |
NE2 |
CE1 |
HE1 |
125.6 |
125.6 |
CE1 |
NE2 |
HE2 |
123.8 |
126.4 |
Torsion Angles for DHI
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
H |
N |
CA |
H2 |
125.3 |
246.2 |
C |
CA |
N |
CB |
238.0 |
240.0 |
C |
CA |
N |
HA |
119.9 |
120.1 |
N |
CA |
C |
O |
56.9 |
199.9 |
N |
CA |
C |
OXT |
235.2 |
19.9 |
CB |
CA |
N |
HA |
242.0 |
240.0 |
N |
CA |
CB |
CG |
73.1 |
65.0 |
N |
CA |
CB |
HB2 |
198.3 |
185.0 |
N |
CA |
CB |
HB3 |
307.8 |
305.0 |
CA |
N |
H |
H2 |
234.7 |
113.8 |
H |
N |
CA |
C |
180.0 |
300.0 |
H |
N |
CA |
CB |
302.1 |
60.0 |
H |
N |
CA |
HA |
60.1 |
180.0 |
CA |
N |
H2 |
H |
122.2 |
246.2 |
H2 |
N |
CA |
C |
54.7 |
53.8 |
H2 |
N |
CA |
CB |
176.7 |
173.8 |
H2 |
N |
CA |
HA |
294.8 |
293.8 |
C |
CA |
N |
H |
180.0 |
300.0 |
C |
CA |
N |
H2 |
54.7 |
53.8 |
N |
CA |
C |
CB |
121.1 |
119.9 |
N |
CA |
C |
HA |
239.1 |
240.0 |
CB |
CA |
C |
HA |
118.0 |
120.0 |
C |
CA |
CB |
CG |
192.4 |
185.0 |
C |
CA |
CB |
HB2 |
317.6 |
304.9 |
C |
CA |
CB |
HB3 |
67.1 |
65.0 |
O |
C |
CA |
OXT |
181.7 |
180.0 |
CA |
C |
OXT |
HXT |
180.0 |
|
CB |
CA |
N |
H |
302.1 |
60.0 |
CB |
CA |
N |
H2 |
176.7 |
173.8 |
N |
CA |
CB |
C |
240.7 |
240.1 |
N |
CA |
CB |
HA |
120.8 |
120.0 |
C |
CA |
CB |
HA |
240.1 |
239.9 |
CB |
CA |
C |
O |
295.8 |
80.0 |
CB |
CA |
C |
OXT |
114.1 |
260.0 |
CG |
CB |
CA |
HB2 |
234.7 |
240.0 |
CG |
CB |
CA |
HB3 |
125.2 |
120.0 |
CA |
CB |
CG |
ND1 |
197.3 |
264.7 |
CA |
CB |
CG |
CD2 |
14.8 |
85.0 |
HB2 |
CB |
CA |
HB3 |
250.5 |
240.0 |
HA |
CA |
N |
H |
60.1 |
180.0 |
HA |
CA |
N |
H2 |
294.8 |
293.8 |
N |
CA |
HA |
C |
118.5 |
120.0 |
N |
CA |
HA |
CB |
239.8 |
240.1 |
C |
CA |
HA |
CB |
121.2 |
120.0 |
HA |
CA |
C |
O |
177.8 |
320.0 |
HA |
CA |
C |
OXT |
356.1 |
140.0 |
HA |
CA |
CB |
CG |
312.2 |
305.1 |
HA |
CA |
CB |
HB2 |
77.5 |
65.0 |
HA |
CA |
CB |
HB3 |
187.0 |
185.1 |
O |
C |
CA |
CB |
295.8 |
80.0 |
O |
C |
CA |
HA |
177.8 |
320.0 |
CA |
C |
O |
OXT |
178.2 |
180.0 |
O |
C |
OXT |
HXT |
358.2 |
|
OXT |
C |
CA |
CB |
114.1 |
260.0 |
OXT |
C |
CA |
HA |
356.1 |
140.0 |
CA |
C |
OXT |
O |
181.8 |
180.0 |
CG |
CB |
CA |
HA |
312.2 |
305.1 |
CA |
CB |
CG |
HB2 |
125.3 |
120.0 |
CA |
CB |
CG |
HB3 |
234.8 |
240.0 |
HB2 |
CB |
CG |
HB3 |
109.5 |
120.0 |
ND1 |
CG |
CB |
CD2 |
182.5 |
179.7 |
CB |
CG |
ND1 |
CE1 |
177.2 |
179.9 |
CB |
CG |
ND1 |
HD1 |
357.3 |
0.2 |
CB |
CG |
CD2 |
NE2 |
183.1 |
180.0 |
CB |
CG |
CD2 |
HD2 |
3.0 |
359.9 |
HB2 |
CB |
CA |
HA |
77.5 |
65.0 |
CA |
CB |
HB2 |
CG |
233.5 |
240.0 |
CA |
CB |
HB2 |
HB3 |
116.8 |
120.0 |
CG |
CB |
HB2 |
HB3 |
243.2 |
240.0 |
HB2 |
CB |
CG |
ND1 |
72.0 |
144.7 |
HB2 |
CB |
CG |
CD2 |
249.5 |
325.0 |
HB3 |
CB |
CA |
HA |
187.0 |
185.1 |
CA |
CB |
HB3 |
CG |
126.5 |
120.0 |
CA |
CB |
HB3 |
HB2 |
243.2 |
240.0 |
CG |
CB |
HB3 |
HB2 |
116.8 |
120.0 |
HB3 |
CB |
CG |
ND1 |
322.5 |
24.7 |
HB3 |
CB |
CG |
CD2 |
140.0 |
205.0 |
ND1 |
CG |
CB |
HB2 |
72.0 |
144.7 |
ND1 |
CG |
CB |
HB3 |
322.5 |
24.7 |
CB |
CG |
ND1 |
CD2 |
178.0 |
180.2 |
ND1 |
CG |
CD2 |
NE2 |
0.9 |
0.2 |
ND1 |
CG |
CD2 |
HD2 |
180.8 |
180.2 |
CE1 |
ND1 |
CG |
HD1 |
179.9 |
179.7 |
CG |
ND1 |
CE1 |
NE2 |
0.3 |
0.4 |
CG |
ND1 |
CE1 |
HE1 |
180.3 |
180.1 |
CD2 |
CG |
CB |
HB2 |
249.5 |
325.0 |
CD2 |
CG |
CB |
HB3 |
140.0 |
205.0 |
CB |
CG |
CD2 |
ND1 |
182.2 |
179.8 |
CD2 |
CG |
ND1 |
CE1 |
359.3 |
359.6 |
CD2 |
CG |
ND1 |
HD1 |
179.3 |
179.9 |
NE2 |
CD2 |
CG |
HD2 |
180.0 |
180.1 |
CG |
CD2 |
NE2 |
CE1 |
359.3 |
360.0 |
CG |
CD2 |
NE2 |
HE2 |
179.3 |
180.0 |
CE1 |
ND1 |
CG |
CD2 |
359.3 |
359.6 |
CG |
ND1 |
CE1 |
HD1 |
180.1 |
180.3 |
CD2 |
NE2 |
CE1 |
ND1 |
0.2 |
359.8 |
NE2 |
CE1 |
ND1 |
HE1 |
180.0 |
180.3 |
ND1 |
CE1 |
NE2 |
HE2 |
180.3 |
179.8 |
HD1 |
ND1 |
CG |
CD2 |
179.3 |
179.9 |
CG |
ND1 |
HD1 |
CE1 |
179.9 |
179.7 |
HD1 |
ND1 |
CE1 |
NE2 |
180.3 |
180.1 |
HD1 |
ND1 |
CE1 |
HE1 |
0.3 |
359.8 |
CG |
CD2 |
NE2 |
HD2 |
180.0 |
179.9 |
ND1 |
CE1 |
NE2 |
CD2 |
0.2 |
359.8 |
CD2 |
NE2 |
CE1 |
HE1 |
180.2 |
180.0 |
CE1 |
NE2 |
CD2 |
HE2 |
180.0 |
180.0 |
CG |
CD2 |
HD2 |
NE2 |
180.1 |
180.1 |
HD2 |
CD2 |
NE2 |
CE1 |
179.3 |
180.1 |
HD2 |
CD2 |
NE2 |
HE2 |
359.3 |
0.0 |
NE2 |
CE1 |
ND1 |
HD1 |
180.3 |
180.1 |
ND1 |
CE1 |
NE2 |
HE1 |
180.0 |
179.7 |
CE1 |
NE2 |
CD2 |
HD2 |
179.3 |
180.1 |
CD2 |
NE2 |
CE1 |
HE2 |
180.0 |
180.0 |
HE1 |
CE1 |
ND1 |
HD1 |
0.3 |
359.8 |
ND1 |
CE1 |
HE1 |
NE2 |
180.0 |
180.3 |
HE1 |
CE1 |
NE2 |
HE2 |
0.3 |
0.1 |
HE2 |
NE2 |
CD2 |
HD2 |
359.3 |
0.0 |
CD2 |
NE2 |
HE2 |
CE1 |
180.1 |
180.0 |
HE2 |
NE2 |
CE1 |
HE1 |
0.3 |
0.1 |