PDB Chemical Component DHH
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DHH
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| NP1 |
C02 |
1.529 |
1.469 |
| NP1 |
HP11 |
1.021 |
1.009 |
| NP1 |
HP12 |
1.020 |
1.009 |
| C02 |
C03 |
1.497 |
1.508 |
| C02 |
C06 |
1.592 |
1.530 |
| C02 |
H02 |
1.114 |
1.090 |
| C03 |
O04 |
1.211 |
1.342 |
| C03 |
O05 |
1.330 |
1.208 |
| O04 |
H04 |
0.950 |
0.967 |
| C06 |
C07 |
1.568 |
1.530 |
| C06 |
H061 |
1.115 |
1.090 |
| C06 |
H062 |
1.116 |
1.089 |
| C07 |
C08 |
1.535 |
1.530 |
| C07 |
H071 |
1.115 |
1.090 |
| C07 |
H072 |
1.114 |
1.090 |
| C08 |
C09 |
1.500 |
1.530 |
| C08 |
H081 |
1.115 |
1.090 |
| C08 |
H082 |
1.116 |
1.090 |
| C09 |
C10 |
1.515 |
1.530 |
| C09 |
H091 |
1.116 |
1.090 |
| C09 |
H092 |
1.114 |
1.090 |
| C10 |
O1 |
1.408 |
1.430 |
| C10 |
O2 |
1.423 |
1.429 |
| C10 |
H10 |
1.115 |
1.090 |
| O1 |
HO1 |
0.951 |
0.967 |
| O2 |
HO2 |
0.951 |
0.967 |
Bond Angles for DHH
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C02 |
NP1 |
HP11 |
113.0 |
106.7 |
| C02 |
NP1 |
HP12 |
110.9 |
106.7 |
| NP1 |
C02 |
C03 |
113.0 |
109.5 |
| NP1 |
C02 |
C06 |
108.5 |
109.5 |
| NP1 |
C02 |
H02 |
109.9 |
109.5 |
| HP11 |
NP1 |
HP12 |
110.8 |
106.7 |
| C03 |
C02 |
C06 |
115.0 |
109.4 |
| C03 |
C02 |
H02 |
102.5 |
109.5 |
| C02 |
C03 |
O04 |
126.4 |
120.0 |
| C02 |
C03 |
O05 |
109.9 |
120.0 |
| C06 |
C02 |
H02 |
107.6 |
109.4 |
| C02 |
C06 |
C07 |
112.4 |
109.5 |
| C02 |
C06 |
H061 |
111.2 |
109.4 |
| C02 |
C06 |
H062 |
111.2 |
109.5 |
| O04 |
C03 |
O05 |
123.6 |
120.0 |
| C03 |
O04 |
H04 |
126.3 |
120.0 |
| C07 |
C06 |
H061 |
111.1 |
109.4 |
| C07 |
C06 |
H062 |
111.1 |
109.5 |
| C06 |
C07 |
C08 |
106.4 |
109.5 |
| C06 |
C07 |
H071 |
113.3 |
109.5 |
| C06 |
C07 |
H072 |
113.4 |
109.5 |
| H061 |
C06 |
H062 |
99.2 |
109.5 |
| C08 |
C07 |
H071 |
113.3 |
109.5 |
| C08 |
C07 |
H072 |
113.4 |
109.5 |
| C07 |
C08 |
C09 |
107.1 |
109.5 |
| C07 |
C08 |
H081 |
113.1 |
109.5 |
| C07 |
C08 |
H082 |
113.1 |
109.5 |
| H071 |
C07 |
H072 |
97.1 |
109.5 |
| C09 |
C08 |
H081 |
113.1 |
109.5 |
| C09 |
C08 |
H082 |
113.1 |
109.5 |
| C08 |
C09 |
C10 |
113.5 |
109.5 |
| C08 |
C09 |
H091 |
110.7 |
109.5 |
| C08 |
C09 |
H092 |
110.7 |
109.5 |
| H081 |
C08 |
H082 |
97.4 |
109.5 |
| C10 |
C09 |
H091 |
110.7 |
109.5 |
| C10 |
C09 |
H092 |
110.7 |
109.5 |
| C09 |
C10 |
O1 |
111.6 |
109.5 |
| C09 |
C10 |
O2 |
117.2 |
109.5 |
| C09 |
C10 |
H10 |
100.0 |
109.5 |
| H091 |
C09 |
H092 |
99.6 |
109.5 |
| O1 |
C10 |
O2 |
99.6 |
109.5 |
| O1 |
C10 |
H10 |
117.5 |
109.4 |
| C10 |
O1 |
HO1 |
111.6 |
106.8 |
| O2 |
C10 |
H10 |
111.9 |
109.5 |
| C10 |
O2 |
HO2 |
117.2 |
106.8 |
Torsion Angles for DHH
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| HP11 |
NP1 |
C02 |
HP12 |
125.2 |
246.2 |
| C03 |
C02 |
NP1 |
C06 |
128.8 |
120.0 |
| C03 |
C02 |
NP1 |
H02 |
246.2 |
240.0 |
| NP1 |
C02 |
C03 |
O04 |
168.3 |
160.0 |
| NP1 |
C02 |
C03 |
O05 |
343.7 |
340.0 |
| C06 |
C02 |
NP1 |
H02 |
117.3 |
120.0 |
| NP1 |
C02 |
C06 |
C07 |
93.9 |
295.0 |
| NP1 |
C02 |
C06 |
H061 |
219.1 |
55.0 |
| NP1 |
C02 |
C06 |
H062 |
328.6 |
175.0 |
| C02 |
NP1 |
HP11 |
HP12 |
234.7 |
113.8 |
| HP11 |
NP1 |
C02 |
C03 |
180.0 |
60.0 |
| HP11 |
NP1 |
C02 |
C06 |
51.1 |
300.0 |
| HP11 |
NP1 |
C02 |
H02 |
293.8 |
180.0 |
| C02 |
NP1 |
HP12 |
HP11 |
126.4 |
246.2 |
| HP12 |
NP1 |
C02 |
C03 |
54.8 |
173.8 |
| HP12 |
NP1 |
C02 |
C06 |
285.9 |
53.8 |
| HP12 |
NP1 |
C02 |
H02 |
168.6 |
293.8 |
| C03 |
C02 |
NP1 |
HP11 |
180.0 |
60.0 |
| C03 |
C02 |
NP1 |
HP12 |
54.8 |
173.8 |
| NP1 |
C02 |
C03 |
C06 |
234.6 |
240.0 |
| NP1 |
C02 |
C03 |
H02 |
118.2 |
120.0 |
| C06 |
C02 |
C03 |
H02 |
243.6 |
240.1 |
| C03 |
C02 |
C06 |
C07 |
326.1 |
175.0 |
| C03 |
C02 |
C06 |
H061 |
91.4 |
294.9 |
| C03 |
C02 |
C06 |
H062 |
200.9 |
55.0 |
| O04 |
C03 |
C02 |
O05 |
184.7 |
179.9 |
| C02 |
C03 |
O04 |
H04 |
180.0 |
180.0 |
| C06 |
C02 |
NP1 |
HP11 |
51.1 |
300.0 |
| C06 |
C02 |
NP1 |
HP12 |
285.9 |
53.8 |
| NP1 |
C02 |
C06 |
C03 |
127.7 |
120.0 |
| NP1 |
C02 |
C06 |
H02 |
241.2 |
240.0 |
| C03 |
C02 |
C06 |
H02 |
113.5 |
120.0 |
| C06 |
C02 |
C03 |
O04 |
293.7 |
280.0 |
| C06 |
C02 |
C03 |
O05 |
109.0 |
100.0 |
| C07 |
C06 |
C02 |
H061 |
234.7 |
240.1 |
| C07 |
C06 |
C02 |
H062 |
125.3 |
120.0 |
| C02 |
C06 |
C07 |
C08 |
180.4 |
180.0 |
| C02 |
C06 |
C07 |
H071 |
305.7 |
300.0 |
| C02 |
C06 |
C07 |
H072 |
55.2 |
60.0 |
| H061 |
C06 |
C02 |
H062 |
250.6 |
240.0 |
| H02 |
C02 |
NP1 |
HP11 |
293.8 |
180.0 |
| H02 |
C02 |
NP1 |
HP12 |
168.6 |
293.8 |
| NP1 |
C02 |
H02 |
C03 |
239.6 |
240.0 |
| NP1 |
C02 |
H02 |
C06 |
117.9 |
120.0 |
| C03 |
C02 |
H02 |
C06 |
238.3 |
240.1 |
| H02 |
C02 |
C03 |
O04 |
50.1 |
39.9 |
| H02 |
C02 |
C03 |
O05 |
225.5 |
220.0 |
| H02 |
C02 |
C06 |
C07 |
212.7 |
55.0 |
| H02 |
C02 |
C06 |
H061 |
337.9 |
175.0 |
| H02 |
C02 |
C06 |
H062 |
87.4 |
295.0 |
| O04 |
C03 |
C02 |
C06 |
293.7 |
280.0 |
| O04 |
C03 |
C02 |
H02 |
50.1 |
39.9 |
| C02 |
C03 |
O04 |
O05 |
174.7 |
180.1 |
| O05 |
C03 |
C02 |
C06 |
109.0 |
100.0 |
| O05 |
C03 |
C02 |
H02 |
225.5 |
220.0 |
| C02 |
C03 |
O05 |
O04 |
184.5 |
179.9 |
| O05 |
C03 |
O04 |
H04 |
5.3 |
360.0 |
| H04 |
O04 |
C03 |
O05 |
5.3 |
360.0 |
| C07 |
C06 |
C02 |
H02 |
212.7 |
55.0 |
| C02 |
C06 |
C07 |
H061 |
125.3 |
119.9 |
| C02 |
C06 |
C07 |
H062 |
234.7 |
240.0 |
| H061 |
C06 |
C07 |
H062 |
109.4 |
120.0 |
| C08 |
C07 |
C06 |
H071 |
234.8 |
240.0 |
| C08 |
C07 |
C06 |
H072 |
125.3 |
120.0 |
| C06 |
C07 |
C08 |
C09 |
137.7 |
180.0 |
| C06 |
C07 |
C08 |
H081 |
263.0 |
300.0 |
| C06 |
C07 |
C08 |
H082 |
12.5 |
60.0 |
| H071 |
C07 |
C06 |
H072 |
250.5 |
240.0 |
| H061 |
C06 |
C02 |
H02 |
337.9 |
175.0 |
| C02 |
C06 |
H061 |
C07 |
234.1 |
240.0 |
| C02 |
C06 |
H061 |
H062 |
117.1 |
120.0 |
| C07 |
C06 |
H061 |
H062 |
243.0 |
240.0 |
| H061 |
C06 |
C07 |
C08 |
55.1 |
60.0 |
| H061 |
C06 |
C07 |
H071 |
180.4 |
180.0 |
| H061 |
C06 |
C07 |
H072 |
289.9 |
300.0 |
| H062 |
C06 |
C02 |
H02 |
87.4 |
295.0 |
| C02 |
C06 |
H062 |
C07 |
126.0 |
120.0 |
| C02 |
C06 |
H062 |
H061 |
243.0 |
240.0 |
| C07 |
C06 |
H062 |
H061 |
117.0 |
120.0 |
| H062 |
C06 |
C07 |
C08 |
305.7 |
300.0 |
| H062 |
C06 |
C07 |
H071 |
71.0 |
60.0 |
| H062 |
C06 |
C07 |
H072 |
180.5 |
180.0 |
| C08 |
C07 |
C06 |
H061 |
55.1 |
60.0 |
| C08 |
C07 |
C06 |
H062 |
305.7 |
300.0 |
| C06 |
C07 |
C08 |
H071 |
125.2 |
120.0 |
| C06 |
C07 |
C08 |
H072 |
234.7 |
240.0 |
| H071 |
C07 |
C08 |
H072 |
109.5 |
120.0 |
| C09 |
C08 |
C07 |
H081 |
234.8 |
240.0 |
| C09 |
C08 |
C07 |
H082 |
125.2 |
120.0 |
| C07 |
C08 |
C09 |
C10 |
164.9 |
180.0 |
| C07 |
C08 |
C09 |
H091 |
290.2 |
300.0 |
| C07 |
C08 |
C09 |
H092 |
39.7 |
60.0 |
| H081 |
C08 |
C07 |
H082 |
250.5 |
240.0 |
| H071 |
C07 |
C06 |
H061 |
180.4 |
180.0 |
| H071 |
C07 |
C06 |
H062 |
71.0 |
60.0 |
| C06 |
C07 |
H071 |
C08 |
238.6 |
240.0 |
| C06 |
C07 |
H071 |
H072 |
119.3 |
120.0 |
| C08 |
C07 |
H071 |
H072 |
240.7 |
240.0 |
| H071 |
C07 |
C08 |
C09 |
12.5 |
60.0 |
| H071 |
C07 |
C08 |
H081 |
137.8 |
180.0 |
| H071 |
C07 |
C08 |
H082 |
247.3 |
300.0 |
| H072 |
C07 |
C06 |
H061 |
289.9 |
300.0 |
| H072 |
C07 |
C06 |
H062 |
180.5 |
180.0 |
| C06 |
C07 |
H072 |
C08 |
121.5 |
120.0 |
| C06 |
C07 |
H072 |
H071 |
240.7 |
240.0 |
| C08 |
C07 |
H072 |
H071 |
119.3 |
120.0 |
| H072 |
C07 |
C08 |
C09 |
263.0 |
300.0 |
| H072 |
C07 |
C08 |
H081 |
28.3 |
60.0 |
| H072 |
C07 |
C08 |
H082 |
137.8 |
180.0 |
| C09 |
C08 |
C07 |
H071 |
12.5 |
60.0 |
| C09 |
C08 |
C07 |
H072 |
263.0 |
300.0 |
| C07 |
C08 |
C09 |
H081 |
125.3 |
120.0 |
| C07 |
C08 |
C09 |
H082 |
234.7 |
240.0 |
| H081 |
C08 |
C09 |
H082 |
109.4 |
120.0 |
| C10 |
C09 |
C08 |
H091 |
234.8 |
240.0 |
| C10 |
C09 |
C08 |
H092 |
125.3 |
120.0 |
| C08 |
C09 |
C10 |
O1 |
257.1 |
65.0 |
| C08 |
C09 |
C10 |
O2 |
11.0 |
185.0 |
| C08 |
C09 |
C10 |
H10 |
132.1 |
305.0 |
| H091 |
C09 |
C08 |
H092 |
250.5 |
240.0 |
| H081 |
C08 |
C07 |
H071 |
137.8 |
180.0 |
| H081 |
C08 |
C07 |
H072 |
28.3 |
60.0 |
| C07 |
C08 |
H081 |
C09 |
238.0 |
240.0 |
| C07 |
C08 |
H081 |
H082 |
119.0 |
120.0 |
| C09 |
C08 |
H081 |
H082 |
241.0 |
240.0 |
| H081 |
C08 |
C09 |
C10 |
39.7 |
60.0 |
| H081 |
C08 |
C09 |
H091 |
164.9 |
180.0 |
| H081 |
C08 |
C09 |
H092 |
274.4 |
300.0 |
| H082 |
C08 |
C07 |
H071 |
247.3 |
300.0 |
| H082 |
C08 |
C07 |
H072 |
137.8 |
180.0 |
| C07 |
C08 |
H082 |
C09 |
122.0 |
120.0 |
| C07 |
C08 |
H082 |
H081 |
240.9 |
240.0 |
| C09 |
C08 |
H082 |
H081 |
119.0 |
120.0 |
| H082 |
C08 |
C09 |
C10 |
290.2 |
300.0 |
| H082 |
C08 |
C09 |
H091 |
55.4 |
60.0 |
| H082 |
C08 |
C09 |
H092 |
164.9 |
180.0 |
| C10 |
C09 |
C08 |
H081 |
39.7 |
60.0 |
| C10 |
C09 |
C08 |
H082 |
290.2 |
300.0 |
| C08 |
C09 |
C10 |
H091 |
125.3 |
120.0 |
| C08 |
C09 |
C10 |
H092 |
234.7 |
240.0 |
| H091 |
C09 |
C10 |
H092 |
109.5 |
120.0 |
| O1 |
C10 |
C09 |
O2 |
246.1 |
240.0 |
| O1 |
C10 |
C09 |
H10 |
125.0 |
120.0 |
| C09 |
C10 |
O1 |
HO1 |
180.0 |
60.0 |
| O2 |
C10 |
C09 |
H10 |
238.9 |
240.0 |
| C09 |
C10 |
O2 |
HO2 |
179.9 |
180.0 |
| H091 |
C09 |
C08 |
H081 |
164.9 |
180.0 |
| H091 |
C09 |
C08 |
H082 |
55.4 |
60.0 |
| C08 |
C09 |
H091 |
C10 |
233.2 |
240.0 |
| C08 |
C09 |
H091 |
H092 |
116.6 |
120.0 |
| C10 |
C09 |
H091 |
H092 |
243.4 |
240.0 |
| H091 |
C09 |
C10 |
O1 |
131.9 |
305.0 |
| H091 |
C09 |
C10 |
O2 |
245.7 |
65.0 |
| H091 |
C09 |
C10 |
H10 |
6.9 |
185.0 |
| H092 |
C09 |
C08 |
H081 |
274.4 |
300.0 |
| H092 |
C09 |
C08 |
H082 |
164.9 |
180.0 |
| C08 |
C09 |
H092 |
C10 |
126.8 |
120.0 |
| C08 |
C09 |
H092 |
H091 |
243.4 |
240.0 |
| C10 |
C09 |
H092 |
H091 |
116.6 |
120.0 |
| H092 |
C09 |
C10 |
O1 |
22.4 |
185.0 |
| H092 |
C09 |
C10 |
O2 |
136.2 |
305.0 |
| H092 |
C09 |
C10 |
H10 |
257.4 |
65.1 |
| O1 |
C10 |
C09 |
H091 |
131.9 |
305.0 |
| O1 |
C10 |
C09 |
H092 |
22.4 |
185.0 |
| C09 |
C10 |
O1 |
O2 |
124.4 |
120.0 |
| C09 |
C10 |
O1 |
H10 |
245.4 |
240.0 |
| O2 |
C10 |
O1 |
H10 |
121.0 |
120.0 |
| O1 |
C10 |
O2 |
HO2 |
300.4 |
300.0 |
| O2 |
C10 |
C09 |
H091 |
245.7 |
65.0 |
| O2 |
C10 |
C09 |
H092 |
136.2 |
305.0 |
| C09 |
C10 |
O2 |
O1 |
239.6 |
240.0 |
| C09 |
C10 |
O2 |
H10 |
114.7 |
120.0 |
| O1 |
C10 |
O2 |
H10 |
235.1 |
240.0 |
| O2 |
C10 |
O1 |
HO1 |
55.6 |
300.0 |
| H10 |
C10 |
C09 |
H091 |
6.9 |
185.0 |
| H10 |
C10 |
C09 |
H092 |
257.4 |
65.1 |
| C09 |
C10 |
H10 |
O1 |
120.9 |
120.0 |
| C09 |
C10 |
H10 |
O2 |
235.2 |
240.0 |
| O1 |
C10 |
H10 |
O2 |
114.3 |
120.0 |
| H10 |
C10 |
O1 |
HO1 |
294.6 |
179.9 |
| H10 |
C10 |
O2 |
HO2 |
65.3 |
60.0 |
| HO1 |
O1 |
C10 |
O2 |
55.6 |
300.0 |
| HO1 |
O1 |
C10 |
H10 |
294.6 |
179.9 |
| HO2 |
O2 |
C10 |
H10 |
65.3 |
60.0 |