PDB Chemical Component DHF

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DHF

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.338 1.363
N1 C8A 1.321 1.363
N1 HN1 1.020 0.970
C2 NA2 1.336 1.370
C2 N3 1.331 1.314
NA2 HN21 1.021 0.969
NA2 HN22 1.020 0.970
N3 C4 1.341 1.343
C4 O4 1.372 1.222
C4 C4A 1.391 1.418
C4A N5 1.318 1.363
C4A C8A 1.385 1.390
N5 C6 1.344 1.287
C6 C7 1.447 1.507
C6 C9 1.477 1.507
C7 N8 1.469 1.472
C7 H71 1.115 1.090
C7 H72 1.115 1.091
N8 C8A 1.338 1.375
N8 HN8 1.020 0.970
C9 N10 1.481 1.464
C9 H91 1.114 1.089
C9 H92 1.115 1.090
N10 C14 1.368 1.391
N10 HN0 1.021 0.970
C11 C12 1.382 1.397
C11 C16 1.395 1.398
C11 C 1.434 1.476
C12 C13 1.376 1.375
C12 H12 1.103 1.080
C13 C14 1.409 1.392
C13 H13 1.103 1.080
C14 C15 1.394 1.391
C15 C16 1.387 1.376
C15 H15 1.103 1.080
C16 H16 1.103 1.079
C O 1.231 1.216
C N 1.327 1.347
N CA 1.464 1.465
N HN 1.020 0.970
CA CB 1.559 1.530
CA CT 1.519 1.507
CA HA 1.116 1.089
CB CG 1.531 1.530
CB HB1 1.115 1.090
CB HB2 1.115 1.090
CG CD 1.532 1.506
CG HG1 1.115 1.090
CG HG2 1.115 1.090
CD OE1 1.237 1.208
CD OE2 1.230 1.342
OE2 HOE2 0.949 0.967
CT O1 1.224 1.208
CT O2 1.232 1.342
O2 HO2 0.951 0.967

Bond Angles for DHF

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C8A 121.5 119.9
C2 N1 HN1 107.9 120.1
N1 C2 NA2 120.7 119.2
N1 C2 N3 120.5 121.7
C8A N1 HN1 107.9 120.1
N1 C8A C4A 119.9 119.4
N1 C8A N8 120.9 122.0
NA2 C2 N3 118.4 119.1
C2 NA2 HN21 120.7 120.0
C2 NA2 HN22 108.2 119.9
C2 N3 C4 120.4 121.5
HN21 NA2 HN22 108.2 120.1
N3 C4 O4 119.4 120.4
N3 C4 C4A 120.1 119.2
O4 C4 C4A 119.8 120.4
C4 C4A N5 122.6 121.7
C4 C4A C8A 117.4 118.3
N5 C4A C8A 119.6 120.0
C4A N5 C6 120.7 121.8
C4A C8A N8 118.2 118.6
N5 C6 C7 120.3 121.2
N5 C6 C9 121.1 119.4
C7 C6 C9 118.6 119.4
C6 C7 N8 111.3 109.0
C6 C7 H71 111.5 109.6
C6 C7 H72 111.5 109.6
C6 C9 N10 111.9 109.5
C6 C9 H91 111.3 109.5
C6 C9 H92 111.3 109.5
N8 C7 H71 111.5 109.5
N8 C7 H72 111.5 109.6
C7 N8 C8A 117.2 117.4
C7 N8 HN8 109.5 121.3
H71 C7 H72 98.9 109.6
C8A N8 HN8 109.4 121.3
N10 C9 H91 111.3 109.5
N10 C9 H92 111.3 109.5
C9 N10 C14 118.2 120.0
C9 N10 HN0 109.1 120.0
H91 C9 H92 99.1 109.5
C14 N10 HN0 109.0 119.9
N10 C14 C13 123.5 119.9
N10 C14 C15 118.4 119.9
C12 C11 C16 120.9 119.9
C12 C11 C 118.2 120.1
C11 C12 C13 118.7 119.9
C11 C12 H12 120.8 120.1
C16 C11 C 120.7 120.1
C11 C16 C15 119.9 119.9
C11 C16 H16 120.4 120.0
C11 C O 122.5 120.0
C11 C N 117.1 120.0
C13 C12 H12 120.5 120.0
C12 C13 C14 122.0 120.1
C12 C13 H13 117.8 120.0
C14 C13 H13 120.2 119.9
C13 C14 C15 118.1 120.2
C14 C15 C16 120.4 120.1
C14 C15 H15 120.1 120.0
C16 C15 H15 119.6 119.9
C15 C16 H16 119.8 120.1
O C N 120.4 120.0
C N CA 120.1 120.0
C N HN 115.1 120.0
CA N HN 124.8 120.0
N CA CB 109.2 109.5
N CA CT 111.7 109.5
N CA HA 108.9 109.5
CB CA CT 111.6 109.4
CB CA HA 109.0 109.5
CA CB CG 117.6 109.5
CA CB HB1 109.2 109.5
CA CB HB2 109.3 109.5
CT CA HA 106.3 109.4
CA CT O1 116.7 120.0
CA CT O2 120.9 120.0
CG CB HB1 109.3 109.5
CG CB HB2 109.3 109.4
CB CG CD 114.6 109.5
CB CG HG1 110.3 109.5
CB CG HG2 110.3 109.4
HB1 CB HB2 100.9 109.5
CD CG HG1 110.4 109.5
CD CG HG2 110.4 109.5
CG CD OE1 121.1 120.0
CG CD OE2 118.6 120.0
HG1 CG HG2 99.9 109.5
OE1 CD OE2 120.2 120.0
CD OE2 HOE2 118.6 120.0
O1 CT O2 122.3 120.0
CT O2 HO2 120.9 120.0

Torsion Angles for DHF

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C8A N1 C2 HN1 125.3 179.5
C2 N1 C8A C4A 3.9 360.0
C2 N1 C8A N8 195.4 179.6
NA2 C2 N1 N3 187.4 180.3
N1 C2 NA2 HN21 180.1 179.7
N1 C2 NA2 HN22 54.7 359.5
N1 C2 N3 C4 357.1 0.4
C2 N1 C8A HN1 234.7 180.5
C8A N1 C2 NA2 187.3 179.8
C8A N1 C2 N3 359.8 359.6
C4 C4A C8A N1 355.6 0.5
N5 C4A C8A N1 183.1 179.6
C4A C8A N1 N8 168.5 180.4
C7 N8 C8A N1 204.5 152.1
N1 C8A N8 HN8 329.8 332.2
C2 N1 HN1 C8A 133.0 179.5
HN1 N1 C2 NA2 62.0 0.3
HN1 N1 C2 N3 234.5 180.0
HN1 N1 C8A C4A 129.1 179.5
HN1 N1 C8A N8 320.7 359.1
NA2 C2 N1 C8A 187.3 179.8
NA2 C2 N1 HN1 62.0 0.3
N1 C2 NA2 N3 172.7 179.7
NA2 C2 N3 C4 169.8 180.1
HN21 NA2 C2 HN22 125.3 180.2
N3 C2 N1 C8A 359.8 359.6
N3 C2 N1 HN1 234.5 180.0
N1 C2 N3 NA2 187.3 180.3
N3 C2 NA2 HN21 7.4 359.9
N3 C2 NA2 HN22 242.0 179.7
C2 N3 C4 O4 172.8 180.2
C2 N3 C4 C4A 2.3 0.1
HN21 NA2 C2 N3 7.4 359.9
C2 NA2 HN21 HN22 234.7 179.8
HN22 NA2 C2 N3 242.0 179.7
C2 NA2 HN22 HN21 132.4 180.2
O4 C4 N3 C4A 170.6 180.1
N3 C4 C4A N5 173.7 180.3
N3 C4 C4A C8A 1.3 359.4
N3 C4 O4 C4A 189.4 179.9
O4 C4 C4A N5 3.2 0.3
O4 C4 C4A C8A 190.8 179.4
N1 C8A C4A C4 355.6 0.5
N3 C4 C4A O4 170.5 180.1
N5 C4A C4 C8A 172.3 180.9
C4 C4A N5 C6 168.0 192.9
C4 C4A C8A N8 164.4 180.9
N1 C8A C4A N5 183.1 179.6
C4 C4A N5 C8A 187.8 179.1
N5 C4A C8A N8 351.8 0.0
C4A N5 C6 C7 18.7 1.6
C4A N5 C6 C9 199.7 181.6
C4A C8A N1 HN1 129.1 179.5
N1 C8A C4A N8 191.2 179.6
C4 C4A C8A N5 172.6 180.9
C8A C4A N5 C6 340.1 13.8
C7 N8 C8A C4A 35.9 331.7
C4A C8A N8 HN8 161.2 151.8
C6 N5 C4A C8A 340.1 13.8
C7 C6 N5 C9 179.0 180.0
N5 C6 C7 N8 8.1 332.8
N5 C6 C7 H71 133.3 213.0
N5 C6 C7 H72 242.9 92.8
N5 C6 C9 N10 18.0 360.0
N5 C6 C9 H91 143.2 120.0
N5 C6 C9 H92 252.7 240.0
N5 C6 C7 C9 181.0 180.0
C7 C6 C9 N10 198.9 180.0
C7 C6 C9 H91 324.2 300.0
C7 C6 C9 H92 73.7 60.0
N8 C7 C6 H71 234.8 119.8
N8 C7 C6 H72 125.2 240.1
C6 C7 N8 C8A 325.2 39.7
C6 C7 N8 HN8 200.0 219.6
H71 C7 C6 H72 250.5 120.3
N5 C6 C9 C7 179.0 180.0
C9 C6 C7 N8 187.1 152.9
C9 C6 C7 H71 312.3 33.1
C9 C6 C7 H72 61.9 272.8
N10 C9 C6 H91 234.7 240.0
N10 C9 C6 H92 125.2 120.0
C6 C9 N10 C14 66.7 180.0
C6 C9 N10 HN0 301.4 360.0
H91 C9 C6 H92 250.5 240.0
N1 C8A N8 C7 204.5 152.1
C4A C8A N8 C7 35.9 331.7
N8 C7 C6 C9 187.1 152.9
C6 C7 N8 H71 125.2 240.2
C6 C7 N8 H72 234.8 119.9
H71 C7 N8 H72 109.5 239.8
C8A N8 C7 HN8 125.3 180.1
H71 C7 C6 C9 312.3 33.1
C6 C7 H71 N8 234.9 119.5
C6 C7 H71 H72 117.5 239.7
N8 C7 H71 H72 242.6 120.3
H71 C7 N8 C8A 200.0 159.5
H71 C7 N8 HN8 74.7 339.4
H72 C7 C6 C9 61.9 272.8
C6 C7 H72 N8 125.1 240.5
C6 C7 H72 H71 242.5 120.2
N8 C7 H72 H71 117.4 239.8
H72 C7 N8 C8A 90.5 279.7
H72 C7 N8 HN8 325.2 99.7
N8 C8A N1 HN1 320.7 359.1
N1 C8A N8 C4A 168.6 180.4
C8A N8 C7 H71 200.0 159.5
C8A N8 C7 H72 90.5 279.7
C7 N8 C8A HN8 234.7 179.9
HN8 N8 C7 H71 74.7 339.4
HN8 N8 C7 H72 325.2 99.7
C7 N8 HN8 C8A 129.7 180.1
C6 C9 N10 H91 125.3 120.0
C6 C9 N10 H92 234.8 240.0
H91 C9 N10 H92 109.5 120.0
C14 N10 C9 HN0 125.3 180.0
C9 N10 C14 C13 7.6 180.0
C9 N10 C14 C15 188.9 359.7
C6 C9 H91 N10 234.4 240.0
C6 C9 H91 H92 117.2 120.0
N10 C9 H91 H92 242.8 240.0
H91 C9 N10 C14 301.4 60.0
H91 C9 N10 HN0 176.1 240.0
C6 C9 H92 N10 125.6 120.0
C6 C9 H92 H91 242.8 240.0
N10 C9 H92 H91 117.2 120.0
H92 C9 N10 C14 191.9 300.0
H92 C9 N10 HN0 66.6 120.0
C14 N10 C9 H91 301.4 60.0
C14 N10 C9 H92 191.9 300.0
C9 N10 C14 HN0 234.7 180.0
C12 C13 C14 N10 181.2 180.0
N10 C14 C13 H13 1.1 0.0
C13 C14 N10 C15 178.6 180.3
N10 C14 C15 C16 179.1 179.8
N10 C14 C15 H15 359.2 0.3
HN0 N10 C9 H91 176.1 240.0
HN0 N10 C9 H92 66.6 120.0
C9 N10 HN0 C14 130.4 180.0
HN0 N10 C14 C13 132.9 0.0
HN0 N10 C14 C15 314.2 179.7
C16 C11 C12 C 175.6 180.0
C12 C11 C16 C15 358.9 359.8
C12 C11 C16 H16 178.9 179.9
C12 C11 C O 345.3 0.0
C12 C11 C N 166.1 180.0
C13 C12 C11 H12 179.9 179.9
C11 C12 C13 C14 359.3 0.0
C11 C12 C13 H13 179.3 180.0
C12 C11 C16 C 184.5 180.0
C16 C11 C12 C13 1.3 359.9
C16 C11 C12 H12 181.4 180.0
C16 C11 C O 169.8 180.0
C16 C11 C N 350.5 360.0
C14 C15 C16 C11 0.2 0.5
C11 C16 C15 H15 180.1 180.0
C15 C16 C11 H16 180.0 179.9
C12 C11 C C16 175.6 180.0
C C11 C12 C13 185.8 180.0
C C11 C12 H12 5.8 0.0
C C11 C16 C15 174.4 179.8
C C11 C16 H16 354.3 359.9
O C C11 N 179.3 180.1
C11 C N CA 177.3 180.0
C11 C N HN 357.4 0.1
N10 C14 C13 C12 181.2 180.0
C13 C12 C11 C16 1.3 359.9
C13 C12 C11 C 185.8 180.0
C11 C12 C13 H12 180.1 180.1
C14 C13 C12 H13 179.9 180.1
C12 C13 C14 C15 359.9 0.3
H12 C12 C11 C16 181.4 180.0
H12 C12 C11 C 5.8 0.0
C11 C12 H12 C13 179.9 179.9
H12 C12 C13 C14 179.2 180.0
H12 C12 C13 H13 359.3 359.9
C13 C14 N10 HN0 132.9 0.0
N10 C14 C13 C15 181.4 179.7
C14 C13 C12 H12 179.2 180.0
C12 C13 C14 H13 180.1 179.9
C13 C14 C15 C16 0.4 359.5
C13 C14 C15 H15 180.5 180.0
H13 C13 C12 H12 359.3 359.9
C12 C13 H13 C14 179.9 180.1
H13 C13 C14 C15 179.8 180.3
C15 C14 N10 HN0 314.2 179.7
N10 C14 C15 C13 178.7 180.3
C11 C16 C15 C14 0.2 0.5
C15 C14 C13 H13 179.8 180.3
C16 C15 C14 H15 179.9 179.5
C14 C15 C16 H16 180.2 180.4
C15 C16 C11 C 174.4 179.8
C11 C16 C15 H16 180.0 180.1
C14 C15 C16 H15 180.1 180.5
C14 C15 H15 C16 179.9 179.5
H15 C15 C16 H16 0.2 359.8
H16 C16 C11 C 354.3 359.9
C11 C16 H16 C15 180.0 179.9
H16 C16 C15 H15 0.2 359.8
C11 C O N 180.8 179.9
O C N CA 358.0 359.9
O C N HN 178.1 180.0
C11 C N O 179.3 180.1
CA N C HN 179.9 179.9
C N CA CB 86.9 150.1
C N CA CT 210.8 270.0
C N CA HA 328.0 30.0
C N CA HN 180.1 180.1
CB CA N CT 236.1 240.0
CB CA N HA 118.9 120.0
N CA CB CG 44.6 300.0
N CA CB HB1 169.8 60.0
N CA CB HB2 279.3 180.0
CT CA N HA 242.9 240.0
N CA CT O1 162.2 150.0
N CA CT O2 345.9 330.0
C N HN CA 179.9 179.9
HN N CA CB 266.8 330.0
HN N CA CT 30.8 90.0
HN N CA HA 147.9 209.9
CB CA N HN 266.8 330.0
N CA CB CT 124.0 120.0
N CA CB HA 241.2 239.9
CT CA CB HA 117.2 119.9
CB CA CT O1 284.8 270.0
CB CA CT O2 108.5 90.0
CG CB CA HB1 234.7 240.0
CG CB CA HB2 125.2 120.0
CA CB CG CD 195.6 180.0
CA CB CG HG1 320.9 300.0
CA CB CG HG2 70.3 60.0
HB1 CB CA HB2 250.5 239.9
CT CA N HN 30.8 90.0
N CA CT CB 237.4 240.0
N CA CT HA 118.6 120.0
CB CA CT HA 241.2 240.1
CT CA CB CG 280.6 180.0
CT CA CB HB1 45.8 300.0
CT CA CB HB2 155.3 60.0
O1 CT CA O2 176.3 180.0
CA CT O2 HO2 179.9 180.0
HA CA N HN 147.9 209.9
N CA HA CB 119.1 120.1
N CA HA CT 239.5 240.0
CB CA HA CT 120.4 119.9
HA CA CB CG 163.4 60.1
HA CA CB HB1 288.7 180.1
HA CA CB HB2 38.2 300.1
HA CA CT O1 43.6 30.0
HA CA CT O2 227.3 209.9
CG CB CA CT 280.6 180.0
CG CB CA HA 163.4 60.1
CA CB CG HB1 125.2 120.0
CA CB CG HB2 234.8 240.0
HB1 CB CG HB2 109.5 120.0
CD CG CB HG1 234.7 240.0
CD CG CB HG2 125.3 120.0
CB CG CD OE1 74.1 0.1
CB CG CD OE2 251.9 180.0
HG1 CG CB HG2 250.6 240.0
HB1 CB CA CT 45.8 300.0
HB1 CB CA HA 288.7 180.1
CA CB HB1 CG 230.1 240.0
CA CB HB1 HB2 115.0 120.0
CG CB HB1 HB2 244.9 240.0
HB1 CB CG CD 70.4 60.0
HB1 CB CG HG1 195.7 180.0
HB1 CB CG HG2 305.1 300.0
HB2 CB CA CT 155.3 60.0
HB2 CB CA HA 38.2 300.1
CA CB HB2 CG 129.9 120.0
CA CB HB2 HB1 245.0 240.0
CG CB HB2 HB1 115.1 120.0
HB2 CB CG CD 320.9 300.0
HB2 CB CG HG1 86.1 60.0
HB2 CB CG HG2 195.6 180.0
CD CG CB HB1 70.4 60.0
CD CG CB HB2 320.9 300.0
CB CG CD HG1 125.2 120.0
CB CG CD HG2 234.7 240.1
HG1 CG CD HG2 109.5 120.0
OE1 CD CG OE2 182.1 180.0
CG CD OE2 HOE2 180.0 180.0
HG1 CG CB HB1 195.7 180.0
HG1 CG CB HB2 86.1 60.0
CB CG HG1 CD 232.3 240.0
CB CG HG1 HG2 116.1 119.9
CD CG HG1 HG2 243.8 240.0
HG1 CG CD OE1 308.8 240.0
HG1 CG CD OE2 126.7 60.0
HG2 CG CB HB1 305.1 300.0
HG2 CG CB HB2 195.6 180.0
CB CG HG2 CD 127.7 120.0
CB CG HG2 HG1 243.9 240.0
CD CG HG2 HG1 116.2 120.0
HG2 CG CD OE1 199.3 120.0
HG2 CG CD OE2 17.2 300.0
OE1 CD CG HG1 308.8 240.0
OE1 CD CG HG2 199.3 120.0
CG CD OE1 OE2 177.8 180.0
OE1 CD OE2 HOE2 357.9 360.0
OE2 CD CG HG1 126.7 60.0
OE2 CD CG HG2 17.2 300.0
CG CD OE2 OE1 182.1 180.0
O1 CT CA HA 43.6 30.0
CA CT O1 O2 183.8 180.0
O1 CT O2 HO2 3.8 359.9
O2 CT CA HA 227.3 209.9
CA CT O2 O1 176.1 180.0