PDB Chemical Component DHC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DHC
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
O1 |
1.230 |
1.219 |
| C1 |
C2 |
1.480 |
1.477 |
| C1 |
O2 |
|
1.354 |
| C2 |
C3 |
1.305 |
1.351 |
| C2 |
HC2 |
1.103 |
1.084 |
| C3 |
C1' |
1.461 |
1.454 |
| C3 |
HC3 |
1.103 |
1.096 |
| C1' |
C2' |
1.388 |
1.395 |
| C1' |
C6' |
1.380 |
1.395 |
| C2' |
C3' |
1.402 |
1.395 |
| C2' |
H2' |
1.103 |
1.088 |
| C3' |
C4' |
1.400 |
1.395 |
| C3' |
O3' |
1.264 |
1.362 |
| C4' |
C5' |
1.406 |
1.395 |
| C4' |
O4' |
1.272 |
1.362 |
| C5' |
C6' |
1.390 |
1.394 |
| C5' |
H5' |
1.103 |
1.087 |
| C6' |
H6' |
1.103 |
1.087 |
| O4' |
H4' |
0.950 |
0.971 |
| O3' |
H3' |
0.950 |
0.970 |
| O2 |
HO2 |
|
0.981 |
Bond Angles for DHC
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1 |
C1 |
C2 |
123.7 |
126.4 |
| O1 |
C1 |
O2 |
|
124.9 |
| C2 |
C1 |
O2 |
|
108.7 |
| C1 |
C2 |
C3 |
121.2 |
120.1 |
| C1 |
C2 |
HC2 |
125.8 |
117.9 |
| C1 |
O2 |
HO2 |
|
112.0 |
| C3 |
C2 |
HC2 |
113.0 |
122.0 |
| C2 |
C3 |
C1' |
127.4 |
125.3 |
| C2 |
C3 |
HC3 |
109.8 |
118.6 |
| C1' |
C3 |
HC3 |
122.8 |
116.1 |
| C3 |
C1' |
C2' |
121.5 |
120.0 |
| C3 |
C1' |
C6' |
121.3 |
120.0 |
| C2' |
C1' |
C6' |
117.1 |
120.0 |
| C1' |
C2' |
C3' |
122.1 |
120.0 |
| C1' |
C2' |
H2' |
118.5 |
120.5 |
| C1' |
C6' |
C5' |
122.4 |
120.0 |
| C1' |
C6' |
H6' |
118.5 |
120.8 |
| C3' |
C2' |
H2' |
119.5 |
119.5 |
| C2' |
C3' |
C4' |
119.6 |
120.0 |
| C2' |
C3' |
O3' |
119.2 |
119.5 |
| C4' |
C3' |
O3' |
119.6 |
120.5 |
| C3' |
C4' |
C5' |
118.5 |
120.0 |
| C3' |
C4' |
O4' |
124.3 |
120.6 |
| C3' |
O3' |
H3' |
119.3 |
110.2 |
| C5' |
C4' |
O4' |
117.1 |
119.5 |
| C4' |
C5' |
C6' |
119.6 |
120.0 |
| C4' |
C5' |
H5' |
120.8 |
120.3 |
| C4' |
O4' |
H4' |
124.3 |
110.2 |
| C6' |
C5' |
H5' |
119.6 |
119.7 |
| C5' |
C6' |
H6' |
119.1 |
119.2 |
Torsion Angles for DHC
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
O1 |
O2 |
|
179.9 |
| O1 |
C1 |
C2 |
C3 |
342.8 |
0.7 |
| O1 |
C1 |
C2 |
HC2 |
162.8 |
180.0 |
| O1 |
C1 |
O2 |
HO2 |
|
360.0 |
| O1 |
C1 |
C2 |
O2 |
|
180.1 |
| C2 |
C1 |
O2 |
HO2 |
|
180.1 |
| C3 |
C2 |
C1 |
HC2 |
180.0 |
180.7 |
| C1 |
C2 |
C3 |
C1' |
168.0 |
179.5 |
| C1 |
C2 |
C3 |
HC3 |
347.9 |
0.8 |
| O1 |
C1 |
O2 |
C2 |
|
179.9 |
| O2 |
C1 |
C2 |
C3 |
|
180.6 |
| O2 |
C1 |
C2 |
HC2 |
|
359.9 |
| C3 |
C2 |
C1 |
O2 |
|
180.6 |
| C1 |
C2 |
C3 |
HC2 |
180.0 |
179.3 |
| C1' |
C3 |
C2 |
HC3 |
180.0 |
178.7 |
| C2 |
C3 |
C1' |
C2' |
178.2 |
199.9 |
| C2 |
C3 |
C1' |
C6' |
2.1 |
20.0 |
| HC2 |
C2 |
C1 |
O2 |
|
359.9 |
| C1 |
C2 |
HC2 |
C3 |
180.0 |
180.7 |
| HC2 |
C2 |
C3 |
C1' |
348.0 |
0.2 |
| HC2 |
C2 |
C3 |
HC3 |
168.0 |
181.5 |
| C1' |
C3 |
C2 |
HC2 |
348.0 |
0.2 |
| C2 |
C3 |
C1' |
HC3 |
180.0 |
181.2 |
| C2' |
C1' |
C3 |
C6' |
176.1 |
179.9 |
| C3 |
C1' |
C2' |
C3' |
180.9 |
180.1 |
| C3 |
C1' |
C2' |
H2' |
0.9 |
0.1 |
| C3 |
C1' |
C6' |
C5' |
185.8 |
179.9 |
| C3 |
C1' |
C6' |
H6' |
5.8 |
360.0 |
| HC3 |
C3 |
C2 |
HC2 |
168.0 |
181.5 |
| C2 |
C3 |
HC3 |
C1' |
180.0 |
178.9 |
| HC3 |
C3 |
C1' |
C2' |
358.2 |
18.7 |
| HC3 |
C3 |
C1' |
C6' |
182.1 |
198.8 |
| C2' |
C1' |
C3 |
HC3 |
358.2 |
18.7 |
| C3 |
C1' |
C2' |
C6' |
183.7 |
180.1 |
| C2' |
C1' |
C6' |
C5' |
9.5 |
360.0 |
| C2' |
C1' |
C6' |
H6' |
189.5 |
180.1 |
| C3' |
C2' |
C1' |
H2' |
180.0 |
180.0 |
| C1' |
C2' |
C3' |
C4' |
356.0 |
360.0 |
| C1' |
C2' |
C3' |
O3' |
190.3 |
180.1 |
| C6' |
C1' |
C3 |
HC3 |
182.1 |
198.8 |
| C3 |
C1' |
C6' |
C2' |
176.3 |
179.9 |
| C6' |
C1' |
C2' |
C3' |
357.2 |
0.0 |
| C6' |
C1' |
C2' |
H2' |
177.1 |
180.0 |
| C4' |
C5' |
C6' |
C1' |
350.8 |
0.0 |
| C1' |
C6' |
C5' |
H5' |
170.8 |
180.0 |
| C5' |
C6' |
C1' |
H6' |
180.0 |
179.9 |
| C3' |
C2' |
C1' |
C6' |
357.2 |
0.0 |
| C1' |
C2' |
C3' |
H2' |
180.0 |
180.0 |
| C4' |
C3' |
C2' |
O3' |
165.7 |
179.9 |
| C2' |
C3' |
C4' |
C5' |
4.3 |
0.0 |
| C2' |
C3' |
C4' |
O4' |
180.9 |
180.0 |
| C2' |
C3' |
O3' |
H3' |
180.0 |
167.9 |
| H2' |
C2' |
C1' |
C6' |
177.1 |
180.0 |
| C1' |
C2' |
H2' |
C3' |
180.0 |
180.0 |
| H2' |
C2' |
C3' |
C4' |
176.0 |
180.0 |
| H2' |
C2' |
C3' |
O3' |
10.4 |
0.1 |
| C4' |
C3' |
C2' |
H2' |
176.0 |
180.0 |
| C2' |
C3' |
C4' |
O3' |
194.4 |
180.1 |
| C4' |
C3' |
O3' |
H3' |
14.3 |
348.0 |
| C5' |
C4' |
C3' |
O4' |
183.5 |
180.0 |
| C3' |
C4' |
C5' |
C6' |
2.0 |
360.0 |
| C3' |
C4' |
C5' |
H5' |
182.0 |
180.0 |
| C3' |
C4' |
O4' |
H4' |
180.0 |
143.6 |
| O3' |
C3' |
C2' |
H2' |
10.4 |
0.1 |
| C2' |
C3' |
O3' |
C4' |
165.7 |
179.9 |
| O3' |
C3' |
C4' |
C5' |
170.0 |
179.9 |
| O3' |
C3' |
C4' |
O4' |
346.5 |
359.9 |
| C1' |
C6' |
C5' |
C4' |
350.8 |
0.0 |
| C5' |
C4' |
C3' |
O3' |
170.0 |
179.9 |
| C3' |
C4' |
C5' |
O4' |
176.8 |
180.0 |
| C5' |
C4' |
O4' |
H4' |
356.6 |
323.6 |
| C6' |
C5' |
C4' |
H5' |
180.0 |
180.0 |
| C4' |
C5' |
C6' |
H6' |
170.8 |
179.9 |
| O4' |
C4' |
C3' |
O3' |
346.5 |
359.9 |
| C3' |
C4' |
O4' |
C5' |
183.4 |
180.0 |
| O4' |
C4' |
C5' |
C6' |
185.2 |
180.0 |
| O4' |
C4' |
C5' |
H5' |
5.2 |
0.0 |
| C1' |
C6' |
C5' |
H6' |
180.0 |
180.1 |
| C6' |
C5' |
C4' |
O4' |
185.2 |
180.0 |
| C4' |
C5' |
C6' |
H5' |
180.0 |
180.0 |
| H5' |
C5' |
C4' |
O4' |
5.2 |
0.0 |
| C4' |
C5' |
H5' |
C6' |
180.0 |
180.0 |
| H5' |
C5' |
C6' |
H6' |
350.8 |
359.9 |
| C1' |
C6' |
H6' |
C5' |
180.0 |
179.9 |
| H6' |
C6' |
C5' |
H5' |
350.8 |
359.9 |