PDB Chemical Component DH1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DH1

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C16 O1 1.441 1.429
C16 H161 1.100 1.090
C16 H162 1.100 1.090
C16 H163 1.100 1.090
O1 C2' 1.405 1.360
C2' C3' 1.425 1.387
C2' C1' 1.431 1.388
C3' C4' 1.425 1.382
C3' H3' 1.080 1.079
C4' C5' 1.394 1.387
C4' H4' 1.080 1.080
C5' O5' 1.405 1.360
C5' C6' 1.451 1.387
O5' C52 1.453 1.429
C52 C1 1.559 1.530
C52 H521 1.100 1.090
C52 H522 1.100 1.090
C1 C3 1.569 1.530
C1 H11 1.100 1.090
C1 H12 1.101 1.089
C3 C7 1.532 1.530
C3 H31 1.100 1.090
C3 H32 1.101 1.089
C7 C8 1.513 1.507
C7 H71 1.100 1.090
C7 H72 1.100 1.090
C8 O9 1.224 1.342
C8 O10 1.225 1.209
O9 HO9 0.950 0.967
C6' C1' 1.425 1.382
C6' H6' 1.080 1.079
C1' C51 1.549 1.507
C51 C5 1.556 1.507
C51 H511 1.100 1.090
C51 H512 1.100 1.090
C5 C6 1.428 1.382
C5 C4 1.428 1.396
C6 N1 1.381 1.325
C6 H6 1.080 1.080
N1 C2 1.352 1.325
C2 N2 1.417 1.383
C2 N3 1.353 1.324
N2 HN21 1.000 0.970
N2 HN22 1.000 0.970
N3 C4 1.424 1.329
C4 N4 1.309 1.385
N4 HN41 1.000 0.970
N4 HN42 1.000 0.970

Bond Angles for DH1

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1 C16 H161 109.5 109.5
O1 C16 H162 109.5 109.4
O1 C16 H163 109.5 109.5
C16 O1 C2' 115.2 106.8
H161 C16 H162 109.5 109.5
H161 C16 H163 109.5 109.5
H162 C16 H163 109.5 109.5
O1 C2' C3' 120.3 120.0
O1 C2' C1' 120.0 120.0
C3' C2' C1' 119.7 120.0
C2' C3' C4' 122.1 120.0
C2' C3' H3' 119.0 120.0
C2' C1' C6' 118.7 120.0
C2' C1' C51 119.0 120.0
C4' C3' H3' 119.0 120.0
C3' C4' C5' 118.1 120.0
C3' C4' H4' 120.9 120.0
C5' C4' H4' 120.9 120.0
C4' C5' O5' 117.8 119.9
C4' C5' C6' 121.3 120.0
O5' C5' C6' 120.8 120.0
C5' O5' C52 115.8 106.8
C5' C6' C1' 120.1 120.0
C5' C6' H6' 119.9 120.0
O5' C52 C1 109.0 109.5
O5' C52 H521 109.7 109.4
O5' C52 H522 109.6 109.5
C1 C52 H521 109.7 109.5
C1 C52 H522 109.6 109.5
C52 C1 C3 115.3 109.5
C52 C1 H11 106.2 109.5
C52 C1 H12 107.6 109.5
H521 C52 H522 109.1 109.5
C3 C1 H11 106.2 109.4
C3 C1 H12 107.6 109.5
C1 C3 C7 115.3 109.4
C1 C3 H31 106.2 109.4
C1 C3 H32 107.6 109.5
H11 C1 H12 114.2 109.4
C7 C3 H31 106.3 109.5
C7 C3 H32 107.6 109.5
C3 C7 C8 113.1 109.5
C3 C7 H71 107.4 109.5
C3 C7 H72 108.3 109.5
H31 C3 H32 114.2 109.5
C8 C7 H71 107.4 109.5
C8 C7 H72 108.3 109.4
C7 C8 O9 120.2 120.0
C7 C8 O10 120.0 120.0
H71 C7 H72 112.4 109.5
O9 C8 O10 119.8 120.0
C8 O9 HO9 109.5 120.0
C1' C6' H6' 120.0 120.0
C6' C1' C51 122.3 120.0
C1' C51 C5 115.7 109.5
C1' C51 H511 106.0 109.5
C1' C51 H512 107.4 109.5
C5 C51 H511 106.0 109.5
C5 C51 H512 107.4 109.5
C51 C5 C6 124.8 120.7
C51 C5 C4 119.3 120.8
H511 C51 H512 114.5 109.4
C6 C5 C4 115.9 118.5
C5 C6 N1 121.2 119.3
C5 C6 H6 119.4 120.4
C5 C4 N3 119.8 119.0
C5 C4 N4 121.0 120.4
N1 C6 H6 119.4 120.4
C6 N1 C2 121.7 121.0
N1 C2 N2 120.7 119.2
N1 C2 N3 120.3 121.6
N2 C2 N3 119.1 119.2
C2 N2 HN21 125.3 120.0
C2 N2 HN22 109.3 120.0
C2 N3 C4 121.0 120.6
HN21 N2 HN22 125.3 120.0
N3 C4 N4 119.2 120.5
C4 N4 HN41 126.0 120.0
C4 N4 HN42 108.1 120.0
HN41 N4 HN42 125.9 120.0

Torsion Angles for DH1

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H161 C16 O1 H162 120.0 240.0
H161 C16 O1 H163 240.0 120.0
H162 C16 O1 H163 120.0 240.0
C16 O1 C2' C3' 64.7 0.1
C16 O1 C2' C1' 244.1 179.7
O1 C16 H161 H162 240.0 120.0
O1 C16 H161 H163 120.1 240.0
H161 C16 O1 C2' 178.1 180.0
H162 C16 H161 H163 240.0 120.0
O1 C16 H162 H161 120.0 240.0
O1 C16 H162 H163 240.0 120.0
H162 C16 O1 C2' 58.2 300.0
H161 C16 H162 H163 120.0 240.0
O1 C16 H163 H161 240.0 120.0
O1 C16 H163 H162 120.0 240.0
H163 C16 O1 C2' 298.1 60.0
H161 C16 H163 H162 240.0 120.0
C2' O1 C16 H161 178.1 180.0
C2' O1 C16 H162 58.2 300.0
C2' O1 C16 H163 298.1 60.0
C3' C2' O1 C1' 180.6 180.3
O1 C2' C3' C4' 179.9 180.0
O1 C2' C3' H3' 359.9 359.9
O1 C2' C1' C6' 180.1 179.7
O1 C2' C1' C51 0.1 0.3
O1 C2' C3' C1' 179.4 179.7
C3' C2' C1' C6' 359.5 359.4
C3' C2' C1' C51 179.5 180.0
C4' C3' C2' H3' 180.0 180.0
C2' C3' C4' C5' 359.9 360.0
C2' C3' C4' H4' 179.9 179.9
O1 C2' C1' C3' 180.6 180.3
C1' C2' C3' C4' 0.5 0.3
C1' C2' C3' H3' 180.5 180.3
C5' C6' C1' C2' 0.2 0.6
C2' C1' C6' H6' 180.3 180.3
C6' C1' C2' C51 179.9 179.5
C2' C1' C51 C5 271.1 84.5
C2' C1' C51 H511 154.0 204.5
C2' C1' C51 H512 31.1 324.5
C4' C3' C2' C1' 0.5 0.3
C2' C3' C4' H3' 180.0 180.0
C5' C4' C3' H4' 180.0 180.1
C3' C4' C5' O5' 180.2 180.0
C3' C4' C5' C6' 359.8 360.0
H3' C3' C2' C1' 180.5 180.3
C2' C3' H3' C4' 180.0 180.0
H3' C3' C4' C5' 179.9 180.0
H3' C3' C4' H4' 359.9 360.0
C5' C4' C3' H3' 179.9 180.0
C3' C4' C5' H4' 180.0 179.9
O5' C5' C4' C6' 180.4 180.0
C4' C5' O5' C52 230.6 0.0
C4' C5' C6' C1' 0.1 359.7
C4' C5' C6' H6' 180.1 180.0
H4' C4' C3' H3' 359.9 360.0
C3' C4' H4' C5' 180.0 180.1
H4' C4' C5' O5' 0.2 0.0
H4' C4' C5' C6' 179.8 180.1
O5' C5' C4' H4' 0.2 0.0
C4' C5' O5' C6' 179.6 180.0
O5' C5' C6' C1' 179.7 179.7
O5' C5' C6' H6' 359.7 0.0
C5' O5' C52 C1 163.4 180.0
C5' O5' C52 H521 43.2 300.0
C5' O5' C52 H522 283.4 60.0
C2' C1' C6' C5' 0.2 0.6
C6' C5' C4' H4' 179.8 180.1
C4' C5' C6' O5' 180.4 180.0
C6' C5' O5' C52 51.0 180.0
C1' C6' C5' H6' 180.0 179.7
C5' C6' C1' C51 180.2 180.0
C52 O5' C5' C6' 51.0 180.0
C1 C52 O5' H521 120.2 240.0
C1 C52 O5' H522 240.0 120.1
O5' C52 C1 C3 39.2 180.0
O5' C52 C1 H11 281.8 300.0
O5' C52 C1 H12 159.2 59.9
H521 C52 O5' H522 119.8 240.0
O5' C52 C1 H521 239.8 120.0
O5' C52 C1 H522 120.0 240.0
H521 C52 C1 H522 240.2 120.0
C3 C1 C52 H11 117.4 240.1
C3 C1 C52 H12 240.0 120.1
C52 C1 C3 C7 63.6 180.0
C52 C1 C3 H31 306.2 300.0
C52 C1 C3 H32 183.6 60.0
H11 C1 C52 H12 122.7 240.0
O5' C52 H521 C1 119.8 240.0
O5' C52 H521 H522 239.9 120.0
C1 C52 H521 H522 120.1 239.9
H521 C52 C1 C3 159.4 60.1
H521 C52 C1 H11 42.0 180.0
H521 C52 C1 H12 279.4 300.0
O5' C52 H522 C1 240.4 120.0
O5' C52 H522 H521 120.2 240.0
C1 C52 H522 H521 239.8 120.0
H522 C52 C1 C3 279.2 300.0
H522 C52 C1 H11 161.8 60.0
H522 C52 C1 H12 39.2 180.0
C3 C1 C52 H521 159.4 60.1
C3 C1 C52 H522 279.2 300.0
C52 C1 C3 H11 242.6 120.0
C52 C1 C3 H12 120.0 239.9
H11 C1 C3 H12 237.4 120.0
C7 C3 C1 H31 117.4 240.0
C7 C3 C1 H32 240.0 120.0
C1 C3 C7 C8 49.8 180.0
C1 C3 C7 H71 291.4 300.0
C1 C3 C7 H72 169.9 60.0
H31 C3 C1 H32 122.6 240.0
H11 C1 C52 H521 42.0 180.0
H11 C1 C52 H522 161.8 60.0
C52 C1 H11 C3 123.3 240.0
C52 C1 H11 H12 241.6 120.0
C3 C1 H11 H12 118.4 240.0
H11 C1 C3 C7 180.9 60.0
H11 C1 C3 H31 63.6 180.0
H11 C1 C3 H32 300.9 300.0
H12 C1 C52 H521 279.4 300.0
H12 C1 C52 H522 39.2 180.0
C52 C1 H12 C3 235.2 120.0
C52 C1 H12 H11 117.6 240.0
C3 C1 H12 H11 242.4 120.0
H12 C1 C3 C7 303.6 300.0
H12 C1 C3 H31 186.2 60.0
H12 C1 C3 H32 63.6 180.0
C7 C3 C1 H11 180.9 60.0
C7 C3 C1 H12 303.6 300.0
C1 C3 C7 H31 242.6 120.0
C1 C3 C7 H32 120.0 240.0
H31 C3 C7 H32 237.4 120.0
C8 C7 C3 H71 118.4 240.0
C8 C7 C3 H72 240.0 120.0
C3 C7 C8 O9 62.3 180.0
C3 C7 C8 O10 242.0 0.1
H71 C7 C3 H72 121.6 240.0
H31 C3 C1 H11 63.6 180.0
H31 C3 C1 H12 186.2 60.0
C1 C3 H31 C7 123.2 240.0
C1 C3 H31 H32 241.6 120.0
C7 C3 H31 H32 118.4 239.9
H31 C3 C7 C8 167.2 60.0
H31 C3 C7 H71 48.8 180.0
H31 C3 C7 H72 287.2 300.0
H32 C3 C1 H11 300.9 300.0
H32 C3 C1 H12 63.6 180.0
C1 C3 H32 C7 235.2 120.0
C1 C3 H32 H31 117.6 240.0
C7 C3 H32 H31 242.4 120.1
H32 C3 C7 C8 289.8 300.0
H32 C3 C7 H71 171.4 60.0
H32 C3 C7 H72 49.9 180.0
C8 C7 C3 H31 167.2 60.0
C8 C7 C3 H32 289.8 300.0
C3 C7 C8 H71 241.6 120.0
C3 C7 C8 H72 120.0 240.0
H71 C7 C8 H72 238.4 120.0
O9 C8 C7 O10 180.3 179.9
C7 C8 O9 HO9 179.7 180.0
H71 C7 C3 H31 48.8 180.0
H71 C7 C3 H32 171.4 60.0
C3 C7 H71 C8 122.0 240.0
C3 C7 H71 H72 241.0 120.1
C8 C7 H71 H72 119.0 240.1
H71 C7 C8 O9 180.7 60.0
H71 C7 C8 O10 0.4 240.0
H72 C7 C3 H31 287.2 300.0
H72 C7 C3 H32 49.9 180.0
C3 C7 H72 C8 237.0 120.0
C3 C7 H72 H71 118.5 239.9
C8 C7 H72 H71 241.5 120.0
H72 C7 C8 O9 302.3 300.0
H72 C7 C8 O10 122.0 120.1
O9 C8 C7 H71 180.7 60.0
O9 C8 C7 H72 302.3 300.0
C7 C8 O9 O10 179.7 180.1
O10 C8 C7 H71 0.4 240.0
O10 C8 C7 H72 122.0 120.1
C7 C8 O10 O9 180.3 179.9
O10 C8 O9 HO9 0.0 359.9
HO9 O9 C8 O10 0.0 359.9
C2' C1' C6' C51 180.1 180.5
C5' C6' C1' H6' 180.0 180.3
C6' C1' C51 C5 91.2 265.1
C6' C1' C51 H511 334.0 25.0
C6' C1' C51 H512 211.2 145.0
C5' C6' H6' C1' 180.0 179.7
H6' C6' C1' C51 0.2 359.7
C2' C1' C51 C6' 179.9 179.5
C51 C1' C6' H6' 0.2 359.7
C5 C51 C1' H511 117.1 240.0
C5 C51 C1' H512 240.0 120.1
C1' C51 C5 C6 359.2 265.0
C1' C51 C5 C4 179.1 84.7
H511 C51 C1' H512 122.9 240.0
C1' C51 C5 H511 242.8 120.0
C1' C51 C5 H512 120.0 240.0
H511 C51 C5 H512 237.2 120.0
C6 C5 C51 C4 180.1 180.3
C51 C5 C6 N1 179.8 180.0
C51 C5 C6 H6 359.8 359.9
C51 C5 C4 N3 180.3 179.8
C51 C5 C4 N4 0.1 0.3
C1' C51 H511 C5 123.5 240.0
C1' C51 H511 H512 241.7 120.0
C5 C51 H511 H512 118.2 240.0
H511 C51 C5 C6 116.3 145.0
H511 C51 C5 C4 296.3 324.7
C1' C51 H512 C5 234.9 120.0
C1' C51 H512 H511 117.4 240.0
C5 C51 H512 H511 242.6 120.0
H512 C51 C5 C6 239.2 25.0
H512 C51 C5 C4 59.1 204.7
C6 C5 C51 H511 116.3 145.0
C6 C5 C51 H512 239.2 25.0
C51 C5 C6 C4 179.9 179.7
C6 C5 C4 N3 0.3 359.5
C6 C5 C4 N4 180.0 180.0
N1 C6 C5 H6 180.0 180.1
C5 C6 N1 C2 360.0 359.9
C4 C5 C51 H511 296.3 324.7
C4 C5 C51 H512 59.1 204.7
C51 C5 C4 C6 180.1 180.3
C4 C5 C6 N1 359.9 0.3
C4 C5 C6 H6 179.9 180.2
C2 N3 C4 C5 359.7 0.5
N3 C4 C5 N4 180.3 179.5
C5 C4 N4 HN41 180.1 179.5
C5 C4 N4 HN42 0.1 359.5
N1 C6 C5 C4 359.9 0.3
C5 C6 N1 H6 180.0 179.9
C6 N1 C2 N2 180.1 180.0
C6 N1 C2 N3 0.1 0.1
H6 C6 C5 C4 179.9 180.2
C5 C6 H6 N1 180.0 180.1
H6 C6 N1 C2 180.0 180.0
C2 N1 C6 H6 180.0 180.0
N2 C2 N1 N3 180.1 179.9
N1 C2 N2 HN21 0.0 0.0
N1 C2 N2 HN22 180.0 180.0
N1 C2 N3 C4 0.1 359.7
N1 C2 N2 N3 179.9 180.1
N2 C2 N3 C4 180.0 179.7
HN21 N2 C2 HN22 180.1 180.0
C5 C4 N3 C2 359.7 0.5
N1 C2 N3 N2 180.1 179.9
N3 C2 N2 HN21 180.1 180.0
N3 C2 N2 HN22 0.1 360.0
C2 N3 C4 N4 180.0 180.0
HN21 N2 C2 N3 180.1 180.0
C2 N2 HN21 HN22 179.9 180.0
HN22 N2 C2 N3 0.1 360.0
C2 N2 HN22 HN21 180.1 180.0
C5 C4 N3 N4 179.7 180.5
N3 C4 N4 HN41 359.8 0.0
N3 C4 N4 HN42 179.8 180.0
C5 C4 N4 N3 180.3 179.5
HN41 N4 C4 HN42 180.0 180.0
C4 N4 HN41 HN42 180.0 180.0
C4 N4 HN42 HN41 180.0 180.0