PDB Chemical Component DGU

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DGU

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O1	C1	1.237	1.208
O2	C2	1.436	1.430
O2	HO2	0.950	0.967
C5	O5	1.437	1.429
O5	HO5	0.950	0.967
C6	O6B	1.254	1.343
O6B	HO6B	0.950	0.967
C1	C2	1.545	1.507
C1	H1	1.080	1.080
C2	C3	1.543	1.530
C2	H2	1.100	1.089
C3	O3	1.434	1.429
C3	C4	1.548	1.529
C3	H3	1.100	1.090
O4	C4	1.427	1.429
C4	C5	1.537	1.530
C4	H4	1.100	1.090
C5	C6	1.545	1.507
C5	H5	1.100	1.090
O6A	C6	1.250	1.208
O3	HO3	0.950	0.967
O4	HO4	0.950	0.967

Bond Angles for DGU

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	122.5	120.0
O1	C1	H1	118.8	120.0
C2	O2	HO2	109.5	114.0
O2	C2	C1	108.2	109.5
O2	C2	C3	109.5	109.4
O2	C2	H2	111.5	109.5
C5	O5	HO5	109.5	114.0
C6	O6B	HO6B	109.5	117.0
C2	C1	H1	118.7	120.0
C1	C2	C3	113.0	109.5
C1	C2	H2	107.9	109.5
C3	C2	H2	106.6	109.5
C2	C3	O3	109.4	109.5
C2	C3	C4	114.2	109.5
C2	C3	H3	106.0	109.4
C4	C3	O3	108.5	109.5
O3	C3	H3	112.0	109.4
C3	O3	HO3	109.5	113.9
C4	C3	H3	106.8	109.5
C3	C4	C5	114.2	109.5
C3	C4	H4	105.6	109.5
O4	C4	H4	113.0	109.4
C5	C4	H4	107.9	109.5
C4	C5	C6	112.3	109.5
C4	C5	H5	107.7	109.5
C6	C5	H5	105.4	109.5

Torsion Angles for DGU

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O2	C2	C1	O1	316.5	0.0
C2	C1	O1	H1	180.0	179.9
O1	C1	C2	C3	195.0	240.1
O1	C1	C2	H2	77.3	120.0
O1	C1	C2	O2	316.5	0.0
O2	C2	C1	H1	136.4	180.0
C1	C2	O2	C3	236.4	240.0
C1	C2	O2	H2	118.6	120.0
C3	C2	O2	H2	242.2	240.0
O2	C2	C3	O3	69.9	295.0
O2	C2	C3	C4	191.7	55.0
O2	C2	C3	H3	309.0	175.0
HO2	O2	C2	C1	17.1	300.0
HO2	O2	C2	C3	140.8	60.0
HO2	O2	C2	H2	258.5	180.0
O1	C1	C2	H1	180.0	180.1
C1	C2	O2	HO2	17.1	300.0
O2	C2	C1	C3	121.5	120.0
O2	C2	C1	H2	239.1	240.0
C3	C2	C1	H2	117.6	120.1
C1	C2	C3	O3	190.6	54.9
C1	C2	C3	C4	312.5	175.0
C1	C2	C3	H3	69.8	295.0
O1	C1	H1	C2	180.0	179.9
H1	C1	C2	C3	14.9	60.0
H1	C1	C2	H2	257.3	300.0
C3	C2	O2	HO2	140.8	60.0
O2	C2	C3	C1	239.2	240.0
O2	C2	C3	H2	120.8	120.0
C3	C2	C1	H1	14.9	60.0
C1	C2	C3	H2	241.6	239.9
C4	C3	C2	O3	121.8	120.1
O3	C3	C2	H3	120.9	119.9
C2	C3	O3	HO3	180.0	60.0
C4	C3	C2	H3	242.7	240.0
C2	C3	C4	C5	173.8	180.0
C2	C3	C4	H4	292.2	300.0
H2	C2	O2	HO2	258.5	180.0
O2	C2	H2	C1	118.8	120.0
O2	C2	H2	C3	240.5	240.0
H2	C2	C1	H1	257.3	300.0
C1	C2	H2	C3	121.7	120.1
H2	C2	C3	O3	309.1	175.0
H2	C2	C3	C4	70.9	295.0
H2	C2	C3	H3	188.2	55.1
O3	C3	C2	H2	309.1	175.0
C2	C3	O3	C4	125.2	120.0
C2	C3	O3	H3	242.9	240.1
C4	C3	O3	H3	117.6	120.0
O3	C3	C4	C5	296.1	300.0
O3	C3	C4	H4	54.5	60.0
C4	C3	C2	H2	70.9	295.0
C2	C3	C4	O3	237.7	240.0
C2	C3	C4	H3	116.8	120.0
O3	C3	C4	H3	239.1	240.0
C4	C3	O3	HO3	54.8	300.0
O4	C4	C3	H4	121.9	120.0
C5	C4	C3	H4	241.6	240.0
C3	C4	C5	C6	181.4	185.0
C3	C4	C5	H5	65.7	65.0
H3	C3	C2	H2	188.2	55.1
C2	C3	H3	O3	119.2	120.0
C2	C3	H3	C4	237.8	240.0
C4	C3	H3	O3	241.3	240.0
H3	C3	O3	HO3	297.1	179.9
H3	C3	C4	C5	57.0	60.0
H3	C3	C4	H4	175.4	180.0
O4	C4	C3	H3	297.3	300.0
C3	C4	O4	H4	242.7	240.0
C5	C4	O4	H4	118.7	119.9
O4	C4	C5	H5	186.7	185.0
C4	C5	O5	HO5	180.0	299.9
C5	C4	C3	O3	296.1	300.0
C5	C4	C3	H3	57.0	60.0
C3	C4	C5	H4	117.1	120.0
O4	C4	C5	H4	238.1	240.1
C6	C5	C4	H5	115.7	120.0
H4	C4	C3	O3	54.5	60.0
H4	C4	C3	H3	175.4	180.0
C3	C4	H4	C5	237.5	240.0
H4	C4	C5	C6	64.3	65.0
H4	C4	C5	H5	308.6	304.9
C6	C5	O5	HO5	307.1	60.0
C5	C6	O6B	HO6B	179.5	180.0
C6	C5	C4	H4	64.3	65.0
C4	C5	C6	H5	242.9	240.0
H5	C5	O5	HO5	62.7	180.0
H5	C5	C4	H4	308.6	304.9
C4	C5	H5	C6	120.1	120.0
O6A	C6	O6B	HO6B	0.0	359.9
O6A	C6	C5	H5	97.0	235.0
HO3	O3	C3	H3	297.1	179.9
HO4	O4	C4	H4	295.6	180.1