PDB Chemical Component DGO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DGO
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O4 |
C4 |
1.420 |
1.429 |
| O6 |
C6 |
1.423 |
1.429 |
| C6 |
C5 |
1.512 |
1.530 |
| C4 |
C5 |
1.528 |
1.535 |
| C4 |
C3 |
1.542 |
1.534 |
| O3 |
C3 |
1.434 |
1.429 |
| C5 |
O5 |
1.446 |
1.431 |
| C3 |
C2 |
1.501 |
1.505 |
| O5 |
C1 |
1.366 |
1.351 |
| C2 |
C1 |
1.313 |
1.306 |
| C1 |
H1 |
1.080 |
1.080 |
| C5 |
H5 |
1.100 |
1.089 |
| C4 |
H4 |
1.100 |
1.090 |
| C6 |
C61 |
1.100 |
1.091 |
| C6 |
C62 |
1.101 |
1.090 |
| C3 |
H3 |
1.100 |
1.089 |
| O6 |
HO6 |
0.950 |
0.967 |
| O4 |
HO4 |
0.950 |
0.967 |
| O3 |
HO3 |
0.950 |
0.967 |
| C2 |
H2 |
1.080 |
1.080 |
Bond Angles for DGO
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O4 |
C4 |
H4 |
110.6 |
109.8 |
| O6 |
C6 |
C61 |
108.7 |
109.5 |
| O6 |
C6 |
C62 |
108.7 |
109.5 |
| C6 |
C5 |
O5 |
110.7 |
109.7 |
| C6 |
C5 |
H5 |
106.5 |
109.7 |
| C4 |
C5 |
O5 |
111.4 |
108.2 |
| C4 |
C5 |
H5 |
106.4 |
109.7 |
| C4 |
C3 |
C2 |
112.9 |
109.4 |
| C3 |
C4 |
H4 |
109.0 |
109.9 |
| C4 |
C3 |
H3 |
108.8 |
109.5 |
| O3 |
C3 |
C2 |
106.4 |
109.3 |
| O3 |
C3 |
H3 |
110.3 |
109.5 |
| O5 |
C5 |
H5 |
107.3 |
109.7 |
| C2 |
C3 |
H3 |
109.4 |
109.6 |
| C3 |
C2 |
H2 |
119.3 |
118.8 |
| O5 |
C1 |
H1 |
117.4 |
118.3 |
| C2 |
C1 |
H1 |
117.4 |
118.3 |
| C61 |
C6 |
C62 |
109.5 |
109.5 |
Torsion Angles for DGO
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O4 |
C4 |
C5 |
H5 |
313.3 |
297.6 |
| O4 |
C4 |
C3 |
C2 |
147.1 |
166.5 |
| C3 |
C4 |
O4 |
H4 |
119.9 |
120.8 |
| O4 |
C4 |
C3 |
H3 |
25.5 |
46.4 |
| O6 |
C6 |
C5 |
O5 |
285.6 |
65.0 |
| O6 |
C6 |
C5 |
H5 |
169.2 |
304.4 |
| C61 |
C6 |
O6 |
C62 |
240.9 |
120.0 |
| C4 |
C5 |
C6 |
O5 |
126.6 |
118.8 |
| C4 |
C5 |
C6 |
H5 |
243.0 |
239.4 |
| O5 |
C5 |
C6 |
H5 |
116.4 |
120.6 |
| C6 |
C5 |
C4 |
O5 |
233.8 |
240.3 |
| C6 |
C5 |
C4 |
H5 |
117.1 |
120.6 |
| O5 |
C5 |
C4 |
H5 |
243.3 |
240.3 |
| O4 |
C4 |
C3 |
H4 |
239.1 |
239.3 |
| C3 |
C4 |
C5 |
O5 |
315.8 |
297.4 |
| C3 |
C4 |
C5 |
H5 |
72.5 |
57.1 |
| O3 |
C3 |
C4 |
C2 |
118.0 |
119.8 |
| O3 |
C3 |
C4 |
H3 |
239.7 |
239.9 |
| C2 |
C3 |
C4 |
H3 |
121.6 |
120.1 |
| C4 |
C3 |
C2 |
H2 |
174.3 |
162.6 |
| C4 |
C3 |
O3 |
C2 |
238.0 |
240.2 |
| O3 |
C3 |
C4 |
H4 |
26.1 |
47.1 |
| C4 |
C3 |
O3 |
H3 |
119.4 |
120.1 |
| C2 |
C3 |
O3 |
H3 |
241.4 |
239.9 |
| O3 |
C3 |
C2 |
H2 |
54.9 |
42.7 |
| C6 |
C5 |
O5 |
H5 |
244.1 |
239.4 |
| C4 |
C5 |
O5 |
H5 |
116.1 |
119.7 |
| C5 |
O5 |
C1 |
H1 |
170.7 |
163.4 |
| C2 |
C3 |
C4 |
H4 |
268.1 |
287.3 |
| C4 |
C3 |
C2 |
H3 |
238.7 |
240.0 |
| O3 |
C3 |
C2 |
H3 |
119.2 |
120.1 |
| C3 |
C2 |
C1 |
H1 |
173.8 |
180.4 |
| C2 |
C1 |
O5 |
H1 |
180.0 |
180.3 |
| O5 |
C1 |
C2 |
H1 |
180.0 |
179.7 |
| C6 |
C5 |
H5 |
O5 |
118.7 |
120.6 |
| C4 |
C5 |
H5 |
O5 |
240.6 |
241.3 |
| H4 |
C4 |
C5 |
O5 |
78.4 |
57.3 |
| H4 |
C4 |
C5 |
H5 |
195.0 |
176.9 |
| H4 |
C4 |
C3 |
C2 |
268.1 |
287.3 |
| H4 |
C4 |
C3 |
H3 |
146.4 |
167.2 |
| O6 |
C6 |
C61 |
C62 |
118.7 |
240.0 |
| C61 |
C6 |
C5 |
O5 |
165.2 |
185.0 |
| C61 |
C6 |
C5 |
H5 |
48.8 |
64.4 |
| O6 |
C6 |
C62 |
C61 |
241.3 |
120.0 |
| C62 |
C6 |
C5 |
O5 |
46.1 |
305.0 |
| C62 |
C6 |
C5 |
H5 |
289.6 |
184.4 |
| C4 |
C3 |
H3 |
C2 |
123.8 |
120.0 |
| H3 |
C3 |
C4 |
H4 |
146.4 |
167.2 |
| O3 |
C3 |
H3 |
C2 |
243.3 |
240.0 |
| H3 |
C3 |
C2 |
H2 |
295.7 |
282.6 |
| HO6 |
O6 |
C6 |
C61 |
300.4 |
60.0 |
| HO6 |
O6 |
C6 |
C62 |
59.5 |
300.0 |
| HO4 |
O4 |
C4 |
H4 |
297.2 |
300.7 |
| HO3 |
O3 |
C3 |
C2 |
302.1 |
299.9 |
| HO3 |
O3 |
C3 |
H3 |
60.6 |
60.0 |
| H2 |
C2 |
C3 |
H3 |
295.7 |
282.6 |
| H2 |
C2 |
C1 |
H1 |
353.8 |
0.4 |