PDB Chemical Component DGN
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DGN
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.394 |
1.469 |
| N |
H |
1.020 |
1.009 |
| N |
H2 |
1.020 |
1.009 |
| CA |
C |
1.481 |
1.506 |
| CA |
CB |
1.474 |
1.528 |
| CA |
HA |
1.115 |
1.090 |
| C |
O |
1.247 |
1.207 |
| C |
OXT |
1.241 |
1.343 |
| OXT |
HXT |
0.951 |
0.967 |
| CB |
CG |
1.523 |
1.529 |
| CB |
HB2 |
1.116 |
1.090 |
| CB |
HB3 |
1.115 |
1.091 |
| CG |
CD |
1.451 |
1.506 |
| CG |
HG2 |
1.114 |
1.090 |
| CG |
HG3 |
1.115 |
1.090 |
| CD |
OE1 |
1.254 |
1.212 |
| CD |
NE2 |
1.364 |
1.348 |
| NE2 |
HE21 |
1.019 |
0.969 |
| NE2 |
HE22 |
1.020 |
0.970 |
Bond Angles for DGN
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.1 |
106.7 |
| CA |
N |
H2 |
112.3 |
106.6 |
| N |
CA |
C |
109.1 |
109.4 |
| N |
CA |
CB |
108.0 |
109.5 |
| N |
CA |
HA |
111.7 |
109.4 |
| H |
N |
H2 |
112.4 |
106.7 |
| C |
CA |
CB |
112.3 |
109.5 |
| C |
CA |
HA |
107.3 |
109.5 |
| CA |
C |
O |
120.6 |
120.1 |
| CA |
C |
OXT |
119.7 |
119.9 |
| CB |
CA |
HA |
108.4 |
109.4 |
| CA |
CB |
CG |
110.3 |
109.6 |
| CA |
CB |
HB2 |
111.9 |
109.5 |
| CA |
CB |
HB3 |
111.9 |
109.4 |
| O |
C |
OXT |
119.7 |
120.0 |
| C |
OXT |
HXT |
119.7 |
120.0 |
| CG |
CB |
HB2 |
111.9 |
109.5 |
| CG |
CB |
HB3 |
112.0 |
109.5 |
| CB |
CG |
CD |
106.8 |
109.6 |
| CB |
CG |
HG2 |
113.2 |
109.5 |
| CB |
CG |
HG3 |
113.2 |
109.5 |
| HB2 |
CB |
HB3 |
98.5 |
109.4 |
| CD |
CG |
HG2 |
113.2 |
109.5 |
| CD |
CG |
HG3 |
113.2 |
109.4 |
| CG |
CD |
OE1 |
119.2 |
120.0 |
| CG |
CD |
NE2 |
113.7 |
120.1 |
| HG2 |
CG |
HG3 |
97.3 |
109.4 |
| OE1 |
CD |
NE2 |
127.0 |
119.9 |
| CD |
NE2 |
HE21 |
127.0 |
120.1 |
| CD |
NE2 |
HE22 |
113.7 |
119.9 |
| HE21 |
NE2 |
HE22 |
119.3 |
119.9 |
Torsion Angles for DGN
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.3 |
113.8 |
| C |
CA |
N |
CB |
237.6 |
239.9 |
| C |
CA |
N |
HA |
118.5 |
120.0 |
| N |
CA |
C |
O |
178.5 |
30.0 |
| N |
CA |
C |
OXT |
357.7 |
210.0 |
| CB |
CA |
N |
HA |
240.9 |
240.1 |
| N |
CA |
CB |
CG |
53.6 |
59.9 |
| N |
CA |
CB |
HB2 |
178.9 |
180.0 |
| N |
CA |
CB |
HB3 |
288.3 |
299.9 |
| CA |
N |
H |
H2 |
234.7 |
246.3 |
| H |
N |
CA |
C |
180.0 |
53.8 |
| H |
N |
CA |
CB |
302.4 |
173.8 |
| H |
N |
CA |
HA |
61.5 |
293.7 |
| CA |
N |
H2 |
H |
123.5 |
113.8 |
| H2 |
N |
CA |
C |
54.7 |
300.0 |
| H2 |
N |
CA |
CB |
177.1 |
60.0 |
| H2 |
N |
CA |
HA |
296.2 |
180.0 |
| C |
CA |
N |
H |
180.0 |
53.8 |
| C |
CA |
N |
H2 |
54.7 |
300.0 |
| N |
CA |
C |
CB |
119.7 |
120.0 |
| N |
CA |
C |
HA |
238.8 |
240.0 |
| CB |
CA |
C |
HA |
119.1 |
120.0 |
| C |
CA |
CB |
CG |
174.0 |
179.9 |
| C |
CA |
CB |
HB2 |
299.3 |
300.0 |
| C |
CA |
CB |
HB3 |
48.7 |
59.9 |
| O |
C |
CA |
OXT |
180.8 |
180.0 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| CB |
CA |
N |
H |
302.4 |
173.8 |
| CB |
CA |
N |
H2 |
177.1 |
60.0 |
| N |
CA |
CB |
C |
239.6 |
240.0 |
| N |
CA |
CB |
HA |
121.2 |
119.9 |
| C |
CA |
CB |
HA |
241.6 |
239.9 |
| CB |
CA |
C |
O |
58.7 |
270.0 |
| CB |
CA |
C |
OXT |
238.0 |
90.0 |
| CG |
CB |
CA |
HB2 |
234.7 |
239.9 |
| CG |
CB |
CA |
HB3 |
125.3 |
120.0 |
| CA |
CB |
CG |
CD |
180.8 |
180.0 |
| CA |
CB |
CG |
HG2 |
306.1 |
300.1 |
| CA |
CB |
CG |
HG3 |
55.6 |
60.0 |
| HB2 |
CB |
CA |
HB3 |
250.6 |
240.1 |
| HA |
CA |
N |
H |
61.5 |
293.7 |
| HA |
CA |
N |
H2 |
296.2 |
180.0 |
| N |
CA |
HA |
C |
119.5 |
120.0 |
| N |
CA |
HA |
CB |
241.1 |
240.0 |
| C |
CA |
HA |
CB |
121.6 |
120.1 |
| HA |
CA |
C |
O |
299.7 |
149.9 |
| HA |
CA |
C |
OXT |
118.9 |
330.0 |
| HA |
CA |
CB |
CG |
292.4 |
300.0 |
| HA |
CA |
CB |
HB2 |
57.7 |
60.1 |
| HA |
CA |
CB |
HB3 |
167.1 |
180.0 |
| O |
C |
CA |
CB |
58.7 |
270.0 |
| O |
C |
CA |
HA |
299.7 |
149.9 |
| CA |
C |
O |
OXT |
179.2 |
180.0 |
| O |
C |
OXT |
HXT |
359.2 |
0.1 |
| OXT |
C |
CA |
CB |
238.0 |
90.0 |
| OXT |
C |
CA |
HA |
118.9 |
330.0 |
| CA |
C |
OXT |
O |
180.8 |
180.0 |
| CG |
CB |
CA |
HA |
292.4 |
300.0 |
| CA |
CB |
CG |
HB2 |
125.3 |
120.1 |
| CA |
CB |
CG |
HB3 |
234.7 |
240.0 |
| HB2 |
CB |
CG |
HB3 |
109.5 |
119.9 |
| CD |
CG |
CB |
HG2 |
234.8 |
239.9 |
| CD |
CG |
CB |
HG3 |
125.3 |
120.0 |
| CB |
CG |
CD |
OE1 |
14.3 |
0.1 |
| CB |
CG |
CD |
NE2 |
193.9 |
180.0 |
| HG2 |
CG |
CB |
HG3 |
250.5 |
240.1 |
| HB2 |
CB |
CA |
HA |
57.7 |
60.1 |
| CA |
CB |
HB2 |
CG |
235.6 |
239.9 |
| CA |
CB |
HB2 |
HB3 |
117.8 |
119.9 |
| CG |
CB |
HB2 |
HB3 |
242.1 |
240.1 |
| HB2 |
CB |
CG |
CD |
55.6 |
59.9 |
| HB2 |
CB |
CG |
HG2 |
180.8 |
179.9 |
| HB2 |
CB |
CG |
HG3 |
290.3 |
299.9 |
| HB3 |
CB |
CA |
HA |
167.1 |
180.0 |
| CA |
CB |
HB3 |
CG |
124.4 |
120.1 |
| CA |
CB |
HB3 |
HB2 |
242.2 |
240.0 |
| CG |
CB |
HB3 |
HB2 |
117.8 |
119.9 |
| HB3 |
CB |
CG |
CD |
306.1 |
300.0 |
| HB3 |
CB |
CG |
HG2 |
71.3 |
60.1 |
| HB3 |
CB |
CG |
HG3 |
180.8 |
180.0 |
| CD |
CG |
CB |
HB2 |
55.6 |
59.9 |
| CD |
CG |
CB |
HB3 |
306.1 |
300.0 |
| CB |
CG |
CD |
HG2 |
125.2 |
120.1 |
| CB |
CG |
CD |
HG3 |
234.8 |
240.0 |
| HG2 |
CG |
CD |
HG3 |
109.6 |
119.9 |
| OE1 |
CD |
CG |
NE2 |
180.4 |
180.1 |
| CG |
CD |
NE2 |
HE21 |
0.4 |
180.1 |
| CG |
CD |
NE2 |
HE22 |
180.0 |
360.0 |
| HG2 |
CG |
CB |
HB2 |
180.8 |
179.9 |
| HG2 |
CG |
CB |
HB3 |
71.3 |
60.1 |
| CB |
CG |
HG2 |
CD |
238.3 |
239.9 |
| CB |
CG |
HG2 |
HG3 |
119.1 |
120.0 |
| CD |
CG |
HG2 |
HG3 |
240.8 |
240.1 |
| HG2 |
CG |
CD |
OE1 |
249.0 |
240.0 |
| HG2 |
CG |
CD |
NE2 |
68.6 |
59.9 |
| HG3 |
CG |
CB |
HB2 |
290.3 |
299.9 |
| HG3 |
CG |
CB |
HB3 |
180.8 |
180.0 |
| CB |
CG |
HG3 |
CD |
121.7 |
120.1 |
| CB |
CG |
HG3 |
HG2 |
240.9 |
240.0 |
| CD |
CG |
HG3 |
HG2 |
119.2 |
119.9 |
| HG3 |
CG |
CD |
OE1 |
139.5 |
120.1 |
| HG3 |
CG |
CD |
NE2 |
319.1 |
300.0 |
| OE1 |
CD |
CG |
HG2 |
249.0 |
240.0 |
| OE1 |
CD |
CG |
HG3 |
139.5 |
120.1 |
| CG |
CD |
OE1 |
NE2 |
179.5 |
179.9 |
| OE1 |
CD |
NE2 |
HE21 |
180.0 |
360.0 |
| OE1 |
CD |
NE2 |
HE22 |
359.6 |
179.9 |
| NE2 |
CD |
CG |
HG2 |
68.6 |
59.9 |
| NE2 |
CD |
CG |
HG3 |
319.1 |
300.0 |
| CG |
CD |
NE2 |
OE1 |
180.4 |
180.1 |
| HE21 |
NE2 |
CD |
HE22 |
180.4 |
180.1 |
| CD |
NE2 |
HE21 |
HE22 |
179.5 |
179.9 |
| CD |
NE2 |
HE22 |
HE21 |
180.4 |
180.1 |