PDB Chemical Component DGL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DGL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.458 |
1.469 |
| N |
H |
1.000 |
1.008 |
| N |
H2 |
1.000 |
1.010 |
| CA |
C |
1.522 |
1.508 |
| CA |
CB |
1.536 |
1.530 |
| CA |
HA |
1.100 |
1.090 |
| C |
O |
1.233 |
1.208 |
| C |
OXT |
1.326 |
1.342 |
| CB |
CG |
1.539 |
1.530 |
| CB |
HB2 |
1.100 |
1.090 |
| CB |
HB3 |
1.100 |
1.090 |
| CG |
CD |
1.531 |
1.507 |
| CG |
HG2 |
1.100 |
1.090 |
| CG |
HG3 |
1.100 |
1.090 |
| CD |
OE1 |
1.243 |
1.208 |
| CD |
OE2 |
1.251 |
1.342 |
| OE2 |
HE2 |
0.950 |
0.967 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for DGL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.5 |
111.1 |
| CA |
N |
H2 |
109.5 |
111.0 |
| N |
CA |
C |
113.5 |
109.5 |
| N |
CA |
CB |
109.4 |
109.5 |
| N |
CA |
HA |
106.9 |
109.5 |
| H |
N |
H2 |
109.5 |
111.0 |
| C |
CA |
CB |
109.9 |
109.5 |
| C |
CA |
HA |
106.3 |
109.4 |
| CA |
C |
O |
121.1 |
120.0 |
| CA |
C |
OXT |
116.2 |
120.0 |
| CB |
CA |
HA |
110.7 |
109.5 |
| CA |
CB |
CG |
115.1 |
109.4 |
| CA |
CB |
HB2 |
107.6 |
109.5 |
| CA |
CB |
HB3 |
107.7 |
109.5 |
| O |
C |
OXT |
122.7 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| CG |
CB |
HB2 |
107.6 |
109.5 |
| CG |
CB |
HB3 |
107.6 |
109.5 |
| CB |
CG |
CD |
114.8 |
109.5 |
| CB |
CG |
HG2 |
107.7 |
109.5 |
| CB |
CG |
HG3 |
107.7 |
109.5 |
| HB2 |
CB |
HB3 |
111.3 |
109.5 |
| CD |
CG |
HG2 |
107.8 |
109.5 |
| CD |
CG |
HG3 |
107.7 |
109.5 |
| CG |
CD |
OE1 |
120.2 |
120.0 |
| CG |
CD |
OE2 |
118.3 |
120.0 |
| HG2 |
CG |
HG3 |
111.1 |
109.5 |
| OE1 |
CD |
OE2 |
121.5 |
120.1 |
| CD |
OE2 |
HE2 |
109.5 |
116.9 |
Torsion Angles for DGL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| C |
CA |
N |
CB |
236.9 |
240.0 |
| C |
CA |
N |
HA |
116.9 |
120.0 |
| N |
CA |
C |
O |
228.6 |
20.0 |
| N |
CA |
C |
OXT |
47.7 |
200.0 |
| CB |
CA |
N |
HA |
240.1 |
239.9 |
| N |
CA |
CB |
CG |
67.3 |
65.0 |
| N |
CA |
CB |
HB2 |
187.3 |
185.0 |
| N |
CA |
CB |
HB3 |
307.3 |
305.0 |
| CA |
N |
H |
H2 |
120.0 |
123.9 |
| H |
N |
CA |
C |
180.0 |
300.0 |
| H |
N |
CA |
CB |
303.1 |
60.0 |
| H |
N |
CA |
HA |
63.1 |
180.1 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| H2 |
N |
CA |
C |
300.0 |
64.0 |
| H2 |
N |
CA |
CB |
63.1 |
184.0 |
| H2 |
N |
CA |
HA |
183.1 |
304.0 |
| C |
CA |
N |
H |
180.0 |
300.0 |
| C |
CA |
N |
H2 |
300.0 |
64.0 |
| N |
CA |
C |
CB |
122.8 |
120.0 |
| N |
CA |
C |
HA |
242.7 |
240.0 |
| CB |
CA |
C |
HA |
119.9 |
120.0 |
| C |
CA |
CB |
CG |
192.6 |
185.0 |
| C |
CA |
CB |
HB2 |
312.5 |
305.0 |
| C |
CA |
CB |
HB3 |
72.6 |
65.0 |
| O |
C |
CA |
OXT |
180.9 |
180.0 |
| CA |
C |
OXT |
HXT |
180.9 |
180.0 |
| CB |
CA |
N |
H |
303.1 |
60.0 |
| CB |
CA |
N |
H2 |
63.1 |
184.0 |
| N |
CA |
CB |
C |
234.8 |
240.0 |
| N |
CA |
CB |
HA |
117.6 |
120.1 |
| C |
CA |
CB |
HA |
242.8 |
240.0 |
| CB |
CA |
C |
O |
105.8 |
260.0 |
| CB |
CA |
C |
OXT |
284.8 |
80.0 |
| CG |
CB |
CA |
HB2 |
240.0 |
240.0 |
| CG |
CB |
CA |
HB3 |
120.0 |
120.0 |
| CA |
CB |
CG |
CD |
279.5 |
180.0 |
| CA |
CB |
CG |
HG2 |
39.5 |
300.0 |
| CA |
CB |
CG |
HG3 |
159.5 |
60.0 |
| HB2 |
CB |
CA |
HB3 |
240.0 |
240.0 |
| HA |
CA |
N |
H |
63.1 |
180.1 |
| HA |
CA |
N |
H2 |
183.1 |
304.0 |
| N |
CA |
HA |
C |
121.6 |
120.0 |
| N |
CA |
HA |
CB |
240.9 |
240.0 |
| C |
CA |
HA |
CB |
119.4 |
120.0 |
| HA |
CA |
C |
O |
345.9 |
140.0 |
| HA |
CA |
C |
OXT |
165.0 |
320.0 |
| HA |
CA |
CB |
CG |
309.8 |
305.0 |
| HA |
CA |
CB |
HB2 |
69.7 |
64.9 |
| HA |
CA |
CB |
HB3 |
189.8 |
185.0 |
| O |
C |
CA |
CB |
105.8 |
260.0 |
| O |
C |
CA |
HA |
345.9 |
140.0 |
| CA |
C |
O |
OXT |
179.0 |
180.0 |
| O |
C |
OXT |
HXT |
0.0 |
0.0 |
| OXT |
C |
CA |
CB |
284.8 |
80.0 |
| OXT |
C |
CA |
HA |
165.0 |
320.0 |
| CA |
C |
OXT |
O |
180.9 |
180.0 |
| CG |
CB |
CA |
HA |
309.8 |
305.0 |
| CA |
CB |
CG |
HB2 |
120.0 |
120.0 |
| CA |
CB |
CG |
HB3 |
240.0 |
240.0 |
| HB2 |
CB |
CG |
HB3 |
120.0 |
120.0 |
| CD |
CG |
CB |
HG2 |
240.0 |
240.0 |
| CD |
CG |
CB |
HG3 |
120.0 |
120.0 |
| CB |
CG |
CD |
OE1 |
3.9 |
0.0 |
| CB |
CG |
CD |
OE2 |
184.1 |
180.0 |
| HG2 |
CG |
CB |
HG3 |
240.0 |
240.0 |
| HB2 |
CB |
CA |
HA |
69.7 |
64.9 |
| CA |
CB |
HB2 |
CG |
235.4 |
240.0 |
| CA |
CB |
HB2 |
HB3 |
117.7 |
120.0 |
| CG |
CB |
HB2 |
HB3 |
242.3 |
240.0 |
| HB2 |
CB |
CG |
CD |
159.5 |
60.0 |
| HB2 |
CB |
CG |
HG2 |
279.5 |
180.0 |
| HB2 |
CB |
CG |
HG3 |
39.5 |
300.0 |
| HB3 |
CB |
CA |
HA |
189.8 |
185.0 |
| CA |
CB |
HB3 |
CG |
124.6 |
120.0 |
| CA |
CB |
HB3 |
HB2 |
242.3 |
240.0 |
| CG |
CB |
HB3 |
HB2 |
117.7 |
120.0 |
| HB3 |
CB |
CG |
CD |
39.5 |
300.0 |
| HB3 |
CB |
CG |
HG2 |
159.5 |
60.0 |
| HB3 |
CB |
CG |
HG3 |
279.5 |
180.0 |
| CD |
CG |
CB |
HB2 |
159.5 |
60.0 |
| CD |
CG |
CB |
HB3 |
39.5 |
300.0 |
| CB |
CG |
CD |
HG2 |
120.0 |
120.0 |
| CB |
CG |
CD |
HG3 |
240.0 |
240.0 |
| HG2 |
CG |
CD |
HG3 |
120.0 |
120.0 |
| OE1 |
CD |
CG |
OE2 |
179.8 |
180.0 |
| CG |
CD |
OE2 |
HE2 |
179.8 |
180.0 |
| HG2 |
CG |
CB |
HB2 |
279.5 |
180.0 |
| HG2 |
CG |
CB |
HB3 |
159.5 |
60.0 |
| CB |
CG |
HG2 |
CD |
235.6 |
240.0 |
| CB |
CG |
HG2 |
HG3 |
117.8 |
120.0 |
| CD |
CG |
HG2 |
HG3 |
242.2 |
240.0 |
| HG2 |
CG |
CD |
OE1 |
243.9 |
240.0 |
| HG2 |
CG |
CD |
OE2 |
64.1 |
60.0 |
| HG3 |
CG |
CB |
HB2 |
39.5 |
300.0 |
| HG3 |
CG |
CB |
HB3 |
279.5 |
180.0 |
| CB |
CG |
HG3 |
CD |
124.4 |
120.0 |
| CB |
CG |
HG3 |
HG2 |
242.2 |
240.0 |
| CD |
CG |
HG3 |
HG2 |
117.8 |
120.0 |
| HG3 |
CG |
CD |
OE1 |
123.9 |
120.0 |
| HG3 |
CG |
CD |
OE2 |
304.1 |
300.0 |
| OE1 |
CD |
CG |
HG2 |
243.9 |
240.0 |
| OE1 |
CD |
CG |
HG3 |
123.9 |
120.0 |
| CG |
CD |
OE1 |
OE2 |
180.2 |
180.0 |
| OE1 |
CD |
OE2 |
HE2 |
0.0 |
0.0 |
| OE2 |
CD |
CG |
HG2 |
64.1 |
60.0 |
| OE2 |
CD |
CG |
HG3 |
304.1 |
300.0 |
| CG |
CD |
OE2 |
OE1 |
179.8 |
180.0 |