PDB Chemical Component DGJ

Ideal Model

Chemical Description

Name (2R,3S,4R,5S)-2-(hydroxymethyl)piperidine-3,4,5-triol
Synonyms 1-deoxygalactonojirimycin
Formula C6 H13 N O4
Formal charge 0
Molecular weight 163.172 g/mol
Component type NON-POLYMER

Chemical features

Atom count 24
Chiral atom count 4
Chiral atoms C2 C3 C4 C5
Bond count 24
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) (2R,3S,4R,5S)-2-(hydroxymethyl)piperidine-3,4,5-triol
Systematic name (OpenEye OEToolkits) (2R,3S,4R,5S)-2-(hydroxymethyl)piperidine-3,4,5-triol

Chemical Descriptors

Stereo SMILES (CACTVS) OC[C@H]1NC[C@H](O)[C@@H](O)[C@H]1O
SMILES (CACTVS) OC[CH]1NC[CH](O)[CH](O)[CH]1O
Stereo SMILES (OpenEye) C1[C@@H]([C@H]([C@H]([C@H](N1)CO)O)O)O
InChI descriptor InChI=1S/C6H13NO4/c8-2-3-5(10)6(11)4(9)1-7-3/h3-11H,1-2H2/t3-,4+,5+,6-/m1/s1
InChIKey descriptor LXBIFEVIBLOUGU-DPYQTVNSSA-N

Status Information

Last modified 2021-03-01
Created 2011-07-01
Release status REL
Model PDB code 3S5Y
Processing site RCSB