PDB Chemical Component DGJ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DGJ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N5 |
C1 |
1.447 |
1.468 |
| C2 |
C1 |
1.528 |
1.531 |
| C1 |
H1 |
1.099 |
1.091 |
| C1 |
H1A |
1.100 |
1.090 |
| C3 |
C2 |
1.530 |
1.531 |
| C2 |
O2 |
1.429 |
1.429 |
| C2 |
H2 |
1.100 |
1.090 |
| O2 |
HO2 |
0.950 |
0.967 |
| C4 |
C3 |
1.529 |
1.531 |
| O3 |
C3 |
1.442 |
1.428 |
| C3 |
H3 |
1.100 |
1.091 |
| O3 |
HO3 |
0.950 |
0.967 |
| O4 |
C4 |
1.447 |
1.429 |
| C4 |
C5 |
1.527 |
1.530 |
| C4 |
H4 |
1.100 |
1.090 |
| O4 |
HO4 |
0.950 |
0.968 |
| C6 |
C5 |
1.514 |
1.530 |
| C5 |
N5 |
1.459 |
1.469 |
| C5 |
H5 |
1.100 |
1.090 |
| N5 |
HN5 |
1.000 |
1.008 |
| C6 |
O6 |
1.430 |
1.429 |
| C6 |
H6 |
1.100 |
1.090 |
| C6 |
H6A |
1.100 |
1.090 |
| O6 |
HO6 |
0.950 |
0.967 |
Bond Angles for DGJ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N5 |
C1 |
H1 |
110.2 |
109.5 |
| N5 |
C1 |
H1A |
110.2 |
109.5 |
| C2 |
C1 |
H1 |
110.2 |
109.4 |
| C2 |
C1 |
H1A |
110.2 |
109.4 |
| H1 |
C1 |
H1A |
108.7 |
109.5 |
| C3 |
C2 |
H2 |
108.5 |
109.5 |
| O2 |
C2 |
H2 |
107.8 |
109.5 |
| C2 |
O2 |
HO2 |
109.5 |
114.0 |
| C4 |
C3 |
H3 |
108.8 |
109.5 |
| O3 |
C3 |
H3 |
108.1 |
109.5 |
| O4 |
C4 |
C5 |
111.5 |
109.5 |
| O4 |
C4 |
H4 |
107.7 |
109.5 |
| C5 |
C4 |
H4 |
108.0 |
109.5 |
| C4 |
C5 |
N5 |
112.3 |
109.5 |
| C4 |
C5 |
H5 |
106.5 |
109.5 |
| C6 |
C5 |
H5 |
109.9 |
109.4 |
| N5 |
C5 |
H5 |
108.3 |
109.4 |
| C5 |
N5 |
HN5 |
106.0 |
111.0 |
| O6 |
C6 |
H6 |
109.8 |
109.4 |
| O6 |
C6 |
H6A |
109.8 |
109.5 |
| C6 |
O6 |
HO6 |
109.5 |
114.0 |
| H6 |
C6 |
H6A |
109.1 |
109.5 |
Torsion Angles for DGJ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
N5 |
H1 |
240.0 |
120.0 |
| C2 |
C1 |
N5 |
H1A |
120.0 |
240.0 |
| H1 |
C1 |
N5 |
H1A |
240.0 |
120.0 |
| N5 |
C1 |
C2 |
H1 |
120.0 |
240.0 |
| N5 |
C1 |
C2 |
H1A |
240.0 |
120.0 |
| H1 |
C1 |
C2 |
H1A |
120.0 |
240.1 |
| N5 |
C1 |
H1 |
H1A |
120.9 |
240.0 |
| C2 |
C1 |
H1 |
H1A |
239.1 |
119.9 |
| N5 |
C1 |
H1A |
H1 |
239.1 |
120.0 |
| C2 |
C1 |
H1A |
H1 |
120.8 |
240.1 |
| C3 |
C2 |
C1 |
H1 |
297.5 |
179.2 |
| C3 |
C2 |
C1 |
H1A |
177.5 |
299.1 |
| O2 |
C2 |
C3 |
H2 |
118.2 |
120.1 |
| C3 |
C2 |
O2 |
HO2 |
302.4 |
179.9 |
| O2 |
C2 |
C1 |
H1 |
60.5 |
299.2 |
| O2 |
C2 |
C1 |
H1A |
300.5 |
59.1 |
| C3 |
C2 |
O2 |
H2 |
241.3 |
239.9 |
| H2 |
C2 |
C1 |
H1 |
178.7 |
59.2 |
| H2 |
C2 |
C1 |
H1A |
58.7 |
179.2 |
| H2 |
C2 |
O2 |
HO2 |
61.1 |
300.0 |
| HO2 |
O2 |
C2 |
H2 |
61.1 |
300.0 |
| C4 |
C3 |
C2 |
H2 |
55.6 |
62.3 |
| O3 |
C3 |
C4 |
H3 |
241.3 |
239.8 |
| O3 |
C3 |
C2 |
H2 |
293.5 |
302.3 |
| C4 |
C3 |
O3 |
H3 |
119.1 |
120.1 |
| H3 |
C3 |
C2 |
H2 |
174.8 |
182.2 |
| HO3 |
O3 |
C3 |
H3 |
299.7 |
60.2 |
| O4 |
C4 |
C3 |
H3 |
173.3 |
177.9 |
| C5 |
C4 |
O4 |
H4 |
118.3 |
120.1 |
| O4 |
C4 |
C5 |
N5 |
76.3 |
60.7 |
| O4 |
C4 |
C5 |
H5 |
194.7 |
180.8 |
| C5 |
C4 |
C3 |
H3 |
296.7 |
297.8 |
| O4 |
C4 |
C5 |
H4 |
241.8 |
239.9 |
| C6 |
C5 |
C4 |
H5 |
119.4 |
120.0 |
| N5 |
C5 |
C4 |
H5 |
241.6 |
240.0 |
| C4 |
C5 |
N5 |
HN5 |
286.9 |
297.6 |
| H4 |
C4 |
C3 |
H3 |
55.0 |
57.7 |
| O4 |
C4 |
H4 |
C5 |
120.5 |
120.1 |
| H4 |
C4 |
C5 |
N5 |
194.5 |
180.8 |
| H4 |
C4 |
C5 |
H5 |
312.8 |
300.9 |
| HO4 |
O4 |
C4 |
C5 |
57.4 |
180.2 |
| HO4 |
O4 |
C4 |
H4 |
299.1 |
60.1 |
| C6 |
C5 |
C4 |
H4 |
72.3 |
60.9 |
| C4 |
C5 |
C6 |
H5 |
242.6 |
239.9 |
| N5 |
C5 |
C6 |
H5 |
118.6 |
119.9 |
| C6 |
C5 |
N5 |
HN5 |
50.1 |
57.6 |
| C5 |
N5 |
C1 |
H1 |
68.7 |
178.2 |
| C5 |
N5 |
C1 |
H1A |
188.7 |
58.2 |
| N5 |
C5 |
C4 |
H4 |
194.5 |
180.8 |
| C4 |
C5 |
N5 |
H5 |
117.3 |
120.1 |
| C6 |
C5 |
N5 |
H5 |
240.5 |
240.1 |
| H5 |
C5 |
C4 |
H4 |
312.8 |
300.9 |
| C4 |
C5 |
H5 |
N5 |
239.1 |
239.9 |
| H5 |
C5 |
N5 |
HN5 |
169.6 |
177.5 |
| HN5 |
N5 |
C1 |
H1 |
188.7 |
302.4 |
| HN5 |
N5 |
C1 |
H1A |
308.7 |
182.4 |
| HN5 |
N5 |
C5 |
H5 |
169.6 |
177.5 |
| O6 |
C6 |
C5 |
H5 |
306.2 |
305.1 |
| H6 |
C6 |
O6 |
H6A |
120.0 |
120.0 |
| H6 |
C6 |
C5 |
H5 |
66.2 |
65.0 |
| O6 |
C6 |
H6 |
H6A |
239.6 |
240.0 |
| H6 |
C6 |
O6 |
HO6 |
60.0 |
60.0 |
| H6A |
C6 |
C5 |
H5 |
186.1 |
185.0 |
| O6 |
C6 |
H6A |
H6 |
120.4 |
120.0 |
| H6A |
C6 |
O6 |
HO6 |
300.0 |
300.0 |
| HO6 |
O6 |
C6 |
H6 |
60.0 |
60.0 |
| HO6 |
O6 |
C6 |
H6A |
300.0 |
300.0 |