PDB Chemical Component DG8

Ideal Model

Chemical Description

Name 2'-deoxy-8-(pyren-1-ylamino)guanosine 5'-(dihydrogen phosphate)
Formula C26 H23 N6 O7 P
Formal charge 0
Molecular weight 562.471 g/mol
Component type DNA LINKING
Nonstandard Parent Id DG

Chemical features

Atom count 63
Chiral atom count 3
Chiral atoms C4' C3' C1'
Observed leaving atoms O3P H25
Bond count 69
Aromatic bond count 24

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-8-(pyren-1-ylamino)guanosine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-[2-azanyl-6-oxidanylidene-8-(pyren-1-ylamino)-1H-purin-9-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=Nc2n([C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3)c(Nc4ccc5ccc6cccc7ccc4c5c67)nc2C(=O)N1
SMILES (CACTVS) NC1=Nc2n([CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3)c(Nc4ccc5ccc6cccc7ccc4c5c67)nc2C(=O)N1
Stereo SMILES (OpenEye) c1cc2ccc3ccc(c4c3c2c(c1)cc4)Nc5nc6c(n5[C@H]7C[C@@H]([C@H](O7)COP(=O)(O)O)O)N=C(NC6=O)N
InChI descriptor InChI=1S/C26H23N6O7P/c27-25-30-23-22(24(34)31-25)29-26(32(23)19-10-17(33)18(39-19)11-38-40(35,36)37)28-16-9-7-14-5-4-12-2-1-3-13-6-8-15(16)21(14)20(12)13/h1-9,17-19,33H,10-11H2,(H,28,29)(H2,35,36,37)(H3,27,30,31,34)/t17-,18+,19+/m0/s1
InChIKey descriptor OMTGOBLIMHUJJK-IPMKNSEASA-N

Status Information

Last modified 2013-01-04
Created 2012-05-15
Release status REL
Model PDB code 4EYH
Processing site RCSB