PDB Chemical Component DG3

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DG3

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
PG O1G 1.483 1.479
PG O2G 1.481 1.610
PG O3G 1.610 1.609
PG O3B 1.619 1.610
O2G HOG2 0.949 0.967
O3G HOG3 0.950 0.966
O3B PB 1.614 1.610
PB O1B 1.484 1.480
PB O2B 1.484 1.609
PB O3A 1.621 1.609
O2B HOB2 0.950 0.967
O3A PA 1.607 1.610
PA O1A 1.483 1.480
PA O2A 1.481 1.610
PA O5' 1.594 1.609
O2A HOA2 0.950 0.968
O5' C5' 1.440 1.428
C5' C4' 1.510 1.530
C5' H5'1 1.116 1.089
C5' H5'2 1.115 1.090
C4' O4' 1.451 1.445
C4' C3' 1.520 1.549
C4' H4' 1.115 1.089
O4' C1' 1.417 1.438
C3' C2' 1.523 1.548
C3' H3'1 1.116 1.090
C3' H3'2 1.116 1.090
C2' C1' 1.529 1.541
C2' H2'1 1.115 1.089
C2' H2'2 1.115 1.090
C1' N9 1.460 1.465
C1' H1' 1.114 1.090
N9 C8 1.376 1.365
N9 C4 1.373 1.368
C8 N7 1.304 1.301
C8 H8 1.104 1.079
N7 C5 1.388 1.356
C5 C6 1.419 1.415
C5 C4 1.378 1.399
C6 O6 1.235 1.219
C6 N1 1.390 1.352
N1 C2 1.372 1.363
N1 HN1 1.019 0.970
C2 N2 1.340 1.372
C2 N3 1.320 1.314
N2 HN21 1.019 0.971
N2 HN22 1.020 0.969
N3 C4 1.349 1.338

Bond Angles for DG3

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1G PG O2G 119.6 109.5
O1G PG O3G 107.4 109.5
O1G PG O3B 109.8 109.4
O2G PG O3G 104.2 109.5
O2G PG O3B 110.7 109.5
PG O2G HOG2 119.6 106.8
O3G PG O3B 103.7 109.4
PG O3G HOG3 107.4 106.9
PG O3B PB 135.7 106.8
O3B PB O1B 101.6 109.4
O3B PB O2B 107.4 109.4
O3B PB O3A 106.7 109.5
O1B PB O2B 119.4 109.5
O1B PB O3A 109.2 109.5
O2B PB O3A 111.3 109.5
PB O2B HOB2 107.4 106.8
PB O3A PA 135.4 106.8
O3A PA O1A 107.6 109.5
O3A PA O2A 110.7 109.5
O3A PA O5' 96.9 109.5
O1A PA O2A 119.8 109.5
O1A PA O5' 109.4 109.5
O2A PA O5' 109.9 109.5
PA O2A HOA2 110.8 106.8
PA O5' C5' 121.3 106.8
O5' C5' C4' 110.4 109.5
O5' C5' H5'1 111.8 109.6
O5' C5' H5'2 111.9 109.4
C4' C5' H5'1 111.9 109.4
C4' C5' H5'2 111.9 109.4
C5' C4' O4' 109.4 110.8
C5' C4' C3' 116.0 110.6
C5' C4' H4' 103.6 110.5
H5'1 C5' H5'2 98.5 109.5
O4' C4' C3' 104.7 103.6
O4' C4' H4' 115.2 110.6
C4' O4' C1' 109.6 106.9
C3' C4' H4' 108.4 110.6
C4' C3' C2' 102.2 102.1
C4' C3' H3'1 115.0 110.9
C4' C3' H3'2 115.0 110.9
O4' C1' C2' 107.6 107.4
O4' C1' N9 108.7 109.9
O4' C1' H1' 112.4 109.9
C2' C3' H3'1 115.0 110.9
C2' C3' H3'2 115.0 110.9
C3' C2' C1' 101.7 104.2
C3' C2' H2'1 115.2 110.5
C3' C2' H2'2 115.2 110.5
H3'1 C3' H3'2 95.4 110.8
C1' C2' H2'1 115.2 110.6
C1' C2' H2'2 115.2 110.4
C2' C1' N9 112.7 110.0
C2' C1' H1' 108.4 109.9
H2'1 C2' H2'2 95.3 110.5
N9 C1' H1' 107.2 109.8
C1' N9 C8 127.6 126.2
C1' N9 C4 126.0 126.3
C8 N9 C4 106.4 107.5
N9 C8 N7 113.1 109.8
N9 C8 H8 125.8 125.1
N9 C4 C5 105.4 106.1
N9 C4 N3 125.9 134.2
N7 C8 H8 121.2 125.1
C8 N7 C5 104.3 109.3
N7 C5 C6 130.4 134.1
N7 C5 C4 110.8 107.3
C6 C5 C4 118.7 118.6
C5 C6 O6 128.5 120.9
C5 C6 N1 111.5 118.3
C5 C4 N3 128.7 119.7
O6 C6 N1 120.0 120.8
C6 N1 C2 125.2 120.3
C6 N1 HN1 118.1 119.8
C2 N1 HN1 116.7 119.9
N1 C2 N2 116.4 119.0
N1 C2 N3 123.9 121.9
N2 C2 N3 119.7 119.1
C2 N2 HN21 116.4 119.9
C2 N2 HN22 109.6 120.1
C2 N3 C4 112.0 121.2
HN21 N2 HN22 109.7 120.0

Torsion Angles for DG3

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2G PG O1G O3G 118.3 120.0
O2G PG O1G O3B 230.4 240.0
O1G PG O2G HOG2 180.0 299.9
O3G PG O1G O3B 112.2 120.0
O1G PG O3G HOG3 179.9 180.0
O1G PG O3B PB 292.9 60.0
O1G PG O2G O3G 240.1 239.9
O1G PG O2G O3B 129.2 120.0
O3G PG O2G O3B 249.1 240.0
O2G PG O3G HOG3 52.2 59.9
O2G PG O3B PB 67.1 180.0
O1G PG O3G O2G 127.8 120.0
O1G PG O3G O3B 243.8 240.0
O2G PG O3G O3B 116.0 120.0
O3G PG O2G HOG2 299.9 60.0
O3G PG O3B PB 178.4 300.0
O1G PG O3B O2G 225.8 240.0
O1G PG O3B O3G 114.5 120.0
O2G PG O3B O3G 248.7 240.0
O3B PG O2G HOG2 50.9 180.0
O3B PG O3G HOG3 296.2 299.9
PG O3B PB O1B 174.3 300.0
PG O3B PB O2B 300.4 60.0
PG O3B PB O3A 59.9 180.0
HOG2 O2G PG O3G 299.9 60.0
HOG2 O2G PG O3B 50.9 180.0
HOG3 O3G PG O3B 296.2 299.9
O1B PB O3B O2B 233.9 240.1
O1B PB O3B O3A 114.4 120.0
O2B PB O3B O3A 240.5 239.9
O3B PB O2B HOB2 180.0 60.1
O3B PB O3A PA 241.2 180.0
O3B PB O1B O2B 117.8 119.9
O3B PB O1B O3A 247.5 240.0
O2B PB O1B O3A 129.7 120.1
O1B PB O2B HOB2 294.8 180.0
O1B PB O3A PA 132.1 60.1
O3B PB O2B O1B 245.2 240.1
O3B PB O2B O3A 116.5 120.0
O1B PB O2B O3A 231.2 239.9
O2B PB O3A PA 358.1 300.0
O3B PB O3A O1B 109.1 119.9
O3B PB O3A O2B 243.1 240.0
O1B PB O3A O2B 134.0 120.1
O3A PB O2B HOB2 63.5 300.1
PB O3A PA O1A 164.2 60.0
PB O3A PA O2A 31.5 300.0
PB O3A PA O5' 277.1 180.0
HOB2 O2B PB O3A 63.5 300.1
O1A PA O3A O2A 132.7 120.0
O1A PA O3A O5' 247.1 240.0
O2A PA O3A O5' 114.4 120.0
O3A PA O2A HOA2 179.9 300.0
O3A PA O5' C5' 91.4 180.0
O3A PA O1A O2A 232.4 240.0
O3A PA O1A O5' 104.2 120.0
O2A PA O1A O5' 231.8 240.0
O1A PA O2A HOA2 53.8 180.0
O1A PA O5' C5' 202.8 300.0
O3A PA O2A O1A 126.1 120.0
O3A PA O2A O5' 254.1 240.0
O1A PA O2A O5' 127.9 120.0
O2A PA O5' C5' 336.3 60.0
O3A PA O5' O1A 248.6 240.0
O3A PA O5' O2A 115.1 120.0
O1A PA O5' O2A 226.5 240.0
O5' PA O2A HOA2 285.9 60.0
PA O5' C5' C4' 222.8 180.0
PA O5' C5' H5'1 348.0 60.0
PA O5' C5' H5'2 97.5 300.0
HOA2 O2A PA O5' 285.9 60.0
C4' C5' O5' H5'1 234.7 120.0
C4' C5' O5' H5'2 125.3 240.1
O5' C5' C4' O4' 298.1 65.7
O5' C5' C4' C3' 56.1 180.0
O5' C5' C4' H4' 174.8 302.8
H5'1 C5' O5' H5'2 250.6 120.0
O5' C5' C4' H5'1 125.2 239.9
O5' C5' C4' H5'2 234.7 119.9
H5'1 C5' C4' H5'2 109.5 240.0
O4' C4' C5' C3' 242.0 245.7
O4' C4' C5' H4' 123.3 122.9
C5' C4' O4' C1' 145.1 158.6
C3' C4' C5' H4' 241.3 237.2
C5' C4' C3' C2' 204.1 204.3
C5' C4' C3' H3'1 329.4 86.1
C5' C4' C3' H3'2 78.8 322.5
O5' C5' H5'1 C4' 235.6 120.1
O5' C5' H5'1 H5'2 117.7 240.0
C4' C5' H5'1 H5'2 242.1 119.9
H5'1 C5' C4' O4' 172.9 185.8
H5'1 C5' C4' C3' 290.9 300.1
H5'1 C5' C4' H4' 49.6 62.9
O5' C5' H5'2 C4' 124.4 240.0
O5' C5' H5'2 H5'1 242.3 120.1
C4' C5' H5'2 H5'1 117.8 240.1
H5'2 C5' C4' O4' 63.4 305.8
H5'2 C5' C4' C3' 181.4 60.0
H5'2 C5' C4' H4' 300.1 182.9
O4' C4' C5' H5'1 172.9 185.8
O4' C4' C5' H5'2 63.4 305.8
C5' C4' O4' C3' 124.9 118.7
C5' C4' O4' H4' 243.8 237.2
C3' C4' O4' H4' 118.9 118.5
O4' C4' C3' C2' 324.7 323.0
O4' C4' C3' H3'1 90.0 204.8
O4' C4' C3' H3'2 199.4 81.2
C4' O4' C1' C2' 3.4 333.7
C4' O4' C1' N9 241.0 214.1
C4' O4' C1' H1' 122.5 93.1
C3' C4' C5' H5'1 290.9 300.1
C3' C4' C5' H5'2 181.4 60.0
C5' C4' C3' O4' 239.4 241.3
C5' C4' C3' H4' 116.0 122.8
O4' C4' C3' H4' 236.6 241.5
C3' C4' O4' C1' 20.2 39.9
C2' C3' C4' H3'1 234.7 118.2
C2' C3' C4' H3'2 125.3 241.8
C4' C3' C2' C1' 36.2 20.9
C4' C3' C2' H2'1 161.4 262.1
C4' C3' C2' H2'2 270.9 139.5
H3'1 C3' C4' H3'2 250.6 123.6
H4' C4' C5' H5'1 49.6 62.9
H4' C4' C5' H5'2 300.1 182.9
C5' C4' H4' O4' 119.4 123.0
C5' C4' H4' C3' 236.2 237.1
O4' C4' H4' C3' 116.8 114.1
H4' C4' O4' C1' 261.3 281.4
H4' C4' C3' C2' 88.1 81.5
H4' C4' C3' H3'1 213.4 323.3
H4' C4' C3' H3'2 322.8 199.7
C1' O4' C4' C3' 20.2 39.9
C1' O4' C4' H4' 261.3 281.4
C3' C2' C1' O4' 334.8 1.9
O4' C1' C2' H2'1 209.5 120.7
O4' C1' C2' H2'2 100.0 243.3
C2' C1' O4' N9 122.3 119.6
C2' C1' O4' H1' 240.8 240.5
N9 C1' O4' H1' 118.5 120.9
O4' C1' N9 C8 30.4 28.3
O4' C1' N9 C4 209.8 208.2
C2' C3' C4' H4' 88.1 81.5
C4' C3' C2' H3'1 125.3 241.8
C4' C3' C2' H3'2 234.7 118.2
O4' C1' C2' C3' 334.8 1.9
H3'1 C3' C2' H3'2 109.4 236.4
C1' C2' C3' H2'1 234.7 118.8
C1' C2' C3' H2'2 125.3 241.4
C3' C2' C1' N9 94.6 121.5
C3' C2' C1' H1' 213.1 242.4
H2'1 C2' C3' H2'2 250.5 122.6
H3'1 C3' C4' H4' 213.4 323.3
C4' C3' H3'1 C2' 241.7 112.7
C4' C3' H3'1 H3'2 120.8 236.4
C2' C3' H3'1 H3'2 239.1 123.6
H3'1 C3' C2' C1' 270.9 139.1
H3'1 C3' C2' H2'1 36.1 20.4
H3'1 C3' C2' H2'2 145.6 257.7
H3'2 C3' C4' H4' 322.8 199.7
C4' C3' H3'2 C2' 118.3 247.3
C4' C3' H3'2 H3'1 239.2 123.7
C2' C3' H3'2 H3'1 120.8 236.4
H3'2 C3' C2' C1' 161.5 262.7
H3'2 C3' C2' H2'1 286.7 143.9
H3'2 C3' C2' H2'2 36.2 21.3
O4' C1' C2' N9 240.2 240.4
O4' C1' C2' H1' 121.7 119.5
C1' C2' C3' H3'1 270.9 139.1
C1' C2' C3' H3'2 161.5 262.7
C3' C2' C1' H2'1 125.2 241.2
C3' C2' C1' H2'2 234.7 118.6
H2'1 C2' C1' H2'2 109.5 237.4
N9 C1' C2' H1' 241.5 239.0
C2' C1' N9 C8 271.2 270.3
C2' C1' N9 C4 90.7 90.2
H2'1 C2' C3' H3'1 36.1 20.4
H2'1 C2' C3' H3'2 286.7 143.9
C3' C2' H2'1 C1' 242.1 114.8
C3' C2' H2'1 H2'2 121.0 237.4
C1' C2' H2'1 H2'2 238.9 122.6
H2'1 C2' C1' N9 329.4 240.2
H2'1 C2' C1' H1' 87.8 1.2
H2'2 C2' C3' H3'1 145.6 257.7
H2'2 C2' C3' H3'2 36.2 21.3
C3' C2' H2'2 C1' 117.9 245.3
C3' C2' H2'2 H2'1 239.0 122.6
C1' C2' H2'2 H2'1 121.1 237.4
H2'2 C2' C1' N9 219.9 2.9
H2'2 C2' C1' H1' 338.3 123.8
O4' C1' N9 C2' 119.2 118.0
O4' C1' N9 H1' 238.3 239.0
N9 C1' C2' H2'1 329.4 240.2
N9 C1' C2' H2'2 219.9 2.9
C2' C1' N9 H1' 119.1 121.0
C8 N9 C1' C4 180.6 180.2
C1' N9 C8 N7 179.3 180.0
C1' N9 C8 H8 359.3 359.9
C1' N9 C4 C5 180.7 180.0
C1' N9 C4 N3 0.6 0.2
O4' C1' H1' C2' 241.3 242.0
O4' C1' H1' N9 119.4 121.0
H1' C1' C2' H2'1 87.8 1.2
H1' C1' C2' H2'2 338.3 123.8
C2' C1' H1' N9 238.1 239.0
H1' C1' N9 C8 152.1 149.3
H1' C1' N9 C4 331.6 329.2
C8 N9 C1' H1' 152.1 149.3
C1' N9 C8 C4 179.5 179.9
C8 N9 C4 C5 0.2 359.9
C8 N9 C4 N3 180.1 180.1
N7 C8 N9 H8 180.0 180.1
N9 C8 N7 C5 0.1 360.0
C4 N9 C1' H1' 331.6 329.2
C1' N9 C4 C8 180.5 180.1
C4 N9 C8 N7 359.8 0.1
C4 N9 C8 H8 179.8 180.0
N7 C5 C4 N9 359.8 0.1
C6 C5 C4 N9 179.8 180.1
C5 C4 N9 N3 180.1 179.8
C2 N3 C4 N9 180.2 179.9
N7 C8 N9 C4 359.8 0.1
N9 C8 N7 H8 180.0 179.9
C8 N7 C5 C6 180.1 180.0
C8 N7 C5 C4 0.1 360.0
H8 C8 N9 C4 179.8 180.0
N9 C8 H8 N7 180.0 180.1
H8 C8 N7 C5 180.1 180.0
N9 C4 C5 N7 359.8 0.1
C5 N7 C8 H8 180.1 180.0
C6 C5 N7 C4 180.0 180.0
N7 C5 C6 O6 359.9 0.0
N7 C5 C6 N1 180.0 179.7
N7 C5 C4 N3 179.9 179.9
N9 C4 C5 C6 179.8 180.1
N7 C5 C6 C4 180.0 180.0
C6 C5 C4 N3 359.9 359.9
O6 C6 C5 N1 179.9 180.3
C5 C6 N1 C2 0.0 0.6
C5 C6 N1 HN1 180.0 179.9
N9 C4 C5 N3 179.9 180.2
N7 C5 C4 C6 180.0 180.0
C4 C5 C6 O6 179.9 180.1
C4 C5 C6 N1 0.1 359.7
C2 N3 C4 C5 0.0 0.1
O6 C6 C5 C4 179.9 180.1
C5 C6 O6 N1 180.1 179.6
O6 C6 N1 C2 180.1 180.3
O6 C6 N1 HN1 0.1 359.6
N1 C6 C5 C4 0.1 359.7
C5 C6 N1 O6 179.9 180.3
C2 N1 C6 HN1 180.0 180.7
C6 N1 C2 N2 179.9 179.6
C6 N1 C2 N3 359.9 359.4
C6 N1 C2 HN1 180.0 179.3
N2 C2 N1 N3 179.9 180.2
N1 C2 N2 HN21 180.0 179.7
N1 C2 N2 HN22 54.8 359.5
N1 C2 N3 C4 0.0 0.2
C6 N1 HN1 C2 180.0 180.7
HN1 N1 C2 N2 359.8 0.3
HN1 N1 C2 N3 179.9 180.1
N2 C2 N1 HN1 359.8 0.3
N1 C2 N2 N3 180.1 179.8
N2 C2 N3 C4 180.1 180.0
HN21 N2 C2 HN22 125.2 180.2
N9 C4 N3 C2 180.2 179.9
C5 C4 N3 C2 0.0 0.1
N3 C2 N1 HN1 179.9 180.1
N1 C2 N3 N2 179.9 180.2
N3 C2 N2 HN21 359.9 359.9
N3 C2 N2 HN22 234.7 179.7
HN21 N2 C2 N3 359.9 359.9
C2 N2 HN21 HN22 234.8 179.8
HN22 N2 C2 N3 234.7 179.7
C2 N2 HN22 HN21 129.0 180.2
N9 C4 N3 C5 180.1 179.8