PDB Chemical Component DFX
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DFX
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.544 |
1.530 |
C1 |
O5 |
1.447 |
1.429 |
C1 |
H1 |
1.100 |
1.091 |
C1 |
H12 |
1.100 |
1.090 |
C2 |
C3 |
1.534 |
1.532 |
C2 |
F2 |
1.421 |
1.400 |
C2 |
H2 |
1.100 |
1.090 |
C3 |
C4 |
1.546 |
1.532 |
C3 |
O3 |
1.422 |
1.428 |
C3 |
H3 |
1.100 |
1.091 |
C4 |
C5 |
1.554 |
1.531 |
C4 |
O4 |
1.423 |
1.429 |
C4 |
H4 |
1.100 |
1.090 |
C5 |
O5 |
1.462 |
1.429 |
C5 |
H51 |
1.100 |
1.090 |
C5 |
H52 |
1.100 |
1.090 |
O3 |
HO3 |
0.950 |
0.967 |
O4 |
HO4 |
0.950 |
0.966 |
Bond Angles for DFX
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
O5 |
110.1 |
109.4 |
C2 |
C1 |
H1 |
109.2 |
109.5 |
C2 |
C1 |
H12 |
109.1 |
109.5 |
C1 |
C2 |
C3 |
111.1 |
109.2 |
C1 |
C2 |
F2 |
111.3 |
109.5 |
C1 |
C2 |
H2 |
107.2 |
109.6 |
O5 |
C1 |
H1 |
109.3 |
109.5 |
O5 |
C1 |
H12 |
109.1 |
109.5 |
C1 |
O5 |
C5 |
120.4 |
114.1 |
H1 |
C1 |
H12 |
110.0 |
109.5 |
C3 |
C2 |
F2 |
109.6 |
109.5 |
C3 |
C2 |
H2 |
109.0 |
109.5 |
C2 |
C3 |
C4 |
112.8 |
109.0 |
C2 |
C3 |
O3 |
109.4 |
109.6 |
C2 |
C3 |
H3 |
107.4 |
109.5 |
F2 |
C2 |
H2 |
108.7 |
109.6 |
C4 |
C3 |
O3 |
109.9 |
109.6 |
C4 |
C3 |
H3 |
106.8 |
109.5 |
C3 |
C4 |
C5 |
112.6 |
109.2 |
C3 |
C4 |
O4 |
109.0 |
109.6 |
C3 |
C4 |
H4 |
107.6 |
109.5 |
O3 |
C3 |
H3 |
110.4 |
109.6 |
C3 |
O3 |
HO3 |
109.5 |
114.0 |
C5 |
C4 |
O4 |
109.3 |
109.5 |
C5 |
C4 |
H4 |
107.3 |
109.5 |
C4 |
C5 |
O5 |
112.3 |
109.4 |
C4 |
C5 |
H51 |
108.5 |
109.4 |
C4 |
C5 |
H52 |
107.9 |
109.4 |
O4 |
C4 |
H4 |
111.0 |
109.6 |
C4 |
O4 |
HO4 |
109.5 |
114.1 |
O5 |
C5 |
H51 |
108.5 |
109.5 |
O5 |
C5 |
H52 |
107.9 |
109.5 |
H51 |
C5 |
H52 |
111.7 |
109.6 |
Torsion Angles for DFX
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O5 |
C1 |
C2 |
H1 |
240.0 |
240.0 |
O5 |
C1 |
C2 |
H12 |
119.7 |
120.0 |
C2 |
C1 |
O5 |
C5 |
347.3 |
298.8 |
H1 |
C1 |
C2 |
H12 |
239.8 |
240.0 |
C3 |
C2 |
C1 |
F2 |
237.6 |
240.1 |
C3 |
C2 |
C1 |
H2 |
118.9 |
119.9 |
C1 |
C2 |
C3 |
C4 |
311.8 |
303.0 |
C1 |
C2 |
C3 |
O3 |
189.1 |
183.1 |
C1 |
C2 |
C3 |
H3 |
69.2 |
62.8 |
F2 |
C2 |
C1 |
H2 |
241.3 |
239.8 |
C2 |
C1 |
O5 |
H1 |
120.0 |
120.0 |
C2 |
C1 |
O5 |
H12 |
240.3 |
240.0 |
O5 |
C1 |
C2 |
C3 |
57.6 |
57.6 |
O5 |
C1 |
C2 |
F2 |
180.0 |
177.5 |
O5 |
C1 |
C2 |
H2 |
298.7 |
297.7 |
H1 |
C1 |
O5 |
H12 |
120.3 |
120.0 |
C4 |
C5 |
O5 |
C1 |
320.7 |
61.2 |
C1 |
O5 |
C5 |
H51 |
200.7 |
301.2 |
C1 |
O5 |
C5 |
H52 |
79.5 |
181.1 |
C2 |
C1 |
H1 |
O5 |
239.5 |
240.1 |
C2 |
C1 |
H1 |
H12 |
119.7 |
120.0 |
H1 |
C1 |
C2 |
C3 |
177.6 |
177.6 |
H1 |
C1 |
C2 |
F2 |
300.0 |
297.5 |
H1 |
C1 |
C2 |
H2 |
58.7 |
57.7 |
O5 |
C1 |
H1 |
H12 |
240.3 |
240.0 |
H1 |
C1 |
O5 |
C5 |
227.3 |
178.8 |
C2 |
C1 |
H12 |
O5 |
120.3 |
119.9 |
C2 |
C1 |
H12 |
H1 |
240.2 |
240.0 |
H12 |
C1 |
C2 |
C3 |
297.9 |
297.6 |
H12 |
C1 |
C2 |
F2 |
60.2 |
57.5 |
H12 |
C1 |
C2 |
H2 |
178.9 |
177.7 |
O5 |
C1 |
H12 |
H1 |
119.9 |
120.0 |
H12 |
C1 |
O5 |
C5 |
107.1 |
58.8 |
C3 |
C2 |
C1 |
O5 |
57.6 |
57.6 |
C3 |
C2 |
C1 |
H1 |
177.6 |
177.6 |
C3 |
C2 |
C1 |
H12 |
297.9 |
297.6 |
C1 |
C2 |
C3 |
F2 |
123.4 |
119.9 |
C1 |
C2 |
C3 |
H2 |
242.2 |
240.0 |
F2 |
C2 |
C3 |
H2 |
118.8 |
120.1 |
C4 |
C3 |
C2 |
O3 |
122.7 |
119.9 |
C4 |
C3 |
C2 |
H3 |
242.5 |
240.2 |
C2 |
C3 |
C4 |
C5 |
356.7 |
56.9 |
C2 |
C3 |
C4 |
O4 |
118.2 |
176.9 |
C2 |
C3 |
C4 |
H4 |
238.7 |
297.1 |
O3 |
C3 |
C2 |
H3 |
119.9 |
120.3 |
C2 |
C3 |
O3 |
HO3 |
20.3 |
300.0 |
F2 |
C2 |
C1 |
O5 |
180.0 |
177.5 |
F2 |
C2 |
C1 |
H1 |
300.0 |
297.5 |
F2 |
C2 |
C1 |
H12 |
60.2 |
57.5 |
C1 |
C2 |
F2 |
C3 |
236.8 |
240.3 |
C1 |
C2 |
F2 |
H2 |
117.8 |
120.2 |
C3 |
C2 |
F2 |
H2 |
241.0 |
239.9 |
F2 |
C2 |
C3 |
C4 |
188.4 |
183.2 |
F2 |
C2 |
C3 |
O3 |
65.7 |
63.2 |
F2 |
C2 |
C3 |
H3 |
305.9 |
302.9 |
H2 |
C2 |
C1 |
O5 |
298.7 |
297.7 |
H2 |
C2 |
C1 |
H1 |
58.7 |
57.7 |
H2 |
C2 |
C1 |
H12 |
178.9 |
177.7 |
C1 |
C2 |
H2 |
C3 |
120.3 |
119.7 |
C1 |
C2 |
H2 |
F2 |
239.6 |
239.9 |
C3 |
C2 |
H2 |
F2 |
119.4 |
120.1 |
H2 |
C2 |
C3 |
C4 |
69.6 |
63.0 |
H2 |
C2 |
C3 |
O3 |
306.9 |
303.1 |
H2 |
C2 |
C3 |
H3 |
187.1 |
182.8 |
C4 |
C3 |
C2 |
F2 |
188.4 |
183.2 |
C4 |
C3 |
C2 |
H2 |
69.6 |
63.0 |
C2 |
C3 |
C4 |
O3 |
237.6 |
240.1 |
C2 |
C3 |
C4 |
H3 |
117.8 |
119.8 |
O3 |
C3 |
C4 |
H3 |
240.2 |
239.7 |
C4 |
C3 |
O3 |
HO3 |
255.9 |
180.4 |
C5 |
C4 |
C3 |
O4 |
238.6 |
240.1 |
C5 |
C4 |
C3 |
H4 |
118.0 |
119.9 |
C3 |
C4 |
C5 |
O5 |
46.8 |
302.4 |
C3 |
C4 |
C5 |
H51 |
166.8 |
62.4 |
C3 |
C4 |
C5 |
H52 |
288.0 |
182.4 |
O4 |
C4 |
C3 |
H4 |
239.5 |
239.8 |
C3 |
C4 |
O4 |
HO4 |
70.6 |
179.9 |
O3 |
C3 |
C2 |
F2 |
65.7 |
63.2 |
O3 |
C3 |
C2 |
H2 |
306.9 |
303.1 |
C2 |
C3 |
O3 |
C4 |
124.4 |
119.6 |
C2 |
C3 |
O3 |
H3 |
242.0 |
239.8 |
C4 |
C3 |
O3 |
H3 |
117.6 |
120.2 |
O3 |
C3 |
C4 |
C5 |
119.1 |
176.8 |
O3 |
C3 |
C4 |
O4 |
240.5 |
296.8 |
O3 |
C3 |
C4 |
H4 |
1.0 |
57.0 |
H3 |
C3 |
C2 |
F2 |
305.9 |
302.9 |
H3 |
C3 |
C2 |
H2 |
187.1 |
182.8 |
C2 |
C3 |
H3 |
C4 |
238.7 |
240.5 |
C2 |
C3 |
H3 |
O3 |
119.2 |
120.3 |
C4 |
C3 |
H3 |
O3 |
240.5 |
239.8 |
H3 |
C3 |
C4 |
C5 |
238.9 |
297.1 |
H3 |
C3 |
C4 |
O4 |
0.4 |
57.1 |
H3 |
C3 |
C4 |
H4 |
120.9 |
177.3 |
H3 |
C3 |
O3 |
HO3 |
138.3 |
60.3 |
C1 |
O5 |
C5 |
C4 |
320.7 |
61.2 |
C5 |
C4 |
C3 |
O3 |
119.1 |
176.8 |
C5 |
C4 |
C3 |
H3 |
238.9 |
297.1 |
C3 |
C4 |
C5 |
O4 |
121.3 |
120.0 |
C3 |
C4 |
C5 |
H4 |
241.8 |
240.2 |
O4 |
C4 |
C5 |
H4 |
120.5 |
120.2 |
C5 |
C4 |
O4 |
HO4 |
194.0 |
299.7 |
O5 |
C5 |
C4 |
H51 |
240.0 |
240.0 |
O5 |
C5 |
C4 |
H52 |
118.8 |
120.0 |
H51 |
C5 |
C4 |
H52 |
238.8 |
240.0 |
O4 |
C4 |
C3 |
O3 |
240.5 |
296.8 |
O4 |
C4 |
C3 |
H3 |
0.4 |
57.1 |
C3 |
C4 |
O4 |
C5 |
236.5 |
240.3 |
C3 |
C4 |
O4 |
H4 |
118.4 |
120.1 |
C5 |
C4 |
O4 |
H4 |
241.8 |
239.9 |
O4 |
C4 |
C5 |
O5 |
285.5 |
182.5 |
O4 |
C4 |
C5 |
H51 |
45.5 |
302.4 |
O4 |
C4 |
C5 |
H52 |
166.7 |
62.5 |
H4 |
C4 |
C3 |
O3 |
1.0 |
57.0 |
H4 |
C4 |
C3 |
H3 |
120.9 |
177.3 |
C3 |
C4 |
H4 |
C5 |
121.4 |
119.7 |
C3 |
C4 |
H4 |
O4 |
240.8 |
239.8 |
C5 |
C4 |
H4 |
O4 |
119.4 |
120.2 |
H4 |
C4 |
C5 |
O5 |
165.0 |
62.3 |
H4 |
C4 |
C5 |
H51 |
285.0 |
182.2 |
H4 |
C4 |
C5 |
H52 |
46.2 |
302.3 |
H4 |
C4 |
O4 |
HO4 |
312.2 |
59.8 |
C5 |
O5 |
C1 |
H1 |
227.3 |
178.8 |
C5 |
O5 |
C1 |
H12 |
107.1 |
58.8 |
O5 |
C5 |
C4 |
O4 |
285.5 |
182.5 |
O5 |
C5 |
C4 |
H4 |
165.0 |
62.3 |
C4 |
C5 |
O5 |
H51 |
120.0 |
119.9 |
C4 |
C5 |
O5 |
H52 |
241.2 |
240.1 |
H51 |
C5 |
O5 |
H52 |
121.2 |
120.1 |
H51 |
C5 |
C4 |
O4 |
45.5 |
302.4 |
H51 |
C5 |
C4 |
H4 |
285.0 |
182.2 |
C4 |
C5 |
H51 |
O5 |
237.7 |
240.1 |
C4 |
C5 |
H51 |
H52 |
118.8 |
120.0 |
O5 |
C5 |
H51 |
H52 |
241.2 |
239.9 |
H52 |
C5 |
C4 |
O4 |
166.7 |
62.5 |
H52 |
C5 |
C4 |
H4 |
46.2 |
302.3 |
C4 |
C5 |
H52 |
O5 |
121.6 |
119.9 |
C4 |
C5 |
H52 |
H51 |
240.8 |
240.0 |
O5 |
C5 |
H52 |
H51 |
119.2 |
120.1 |
HO3 |
O3 |
C3 |
H3 |
138.3 |
60.3 |
HO4 |
O4 |
C4 |
H4 |
312.2 |
59.8 |