PDB Chemical Component DFX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DFX

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.544 1.530
C1 O5 1.447 1.429
C1 H1 1.100 1.091
C1 H12 1.100 1.090
C2 C3 1.534 1.532
C2 F2 1.421 1.400
C2 H2 1.100 1.090
C3 C4 1.546 1.532
C3 O3 1.422 1.428
C3 H3 1.100 1.091
C4 C5 1.554 1.531
C4 O4 1.423 1.429
C4 H4 1.100 1.090
C5 O5 1.462 1.429
C5 H51 1.100 1.090
C5 H52 1.100 1.090
O3 HO3 0.950 0.967
O4 HO4 0.950 0.966

Bond Angles for DFX

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 O5 110.1 109.4
C2 C1 H1 109.2 109.5
C2 C1 H12 109.1 109.5
C1 C2 C3 111.1 109.2
C1 C2 F2 111.3 109.5
C1 C2 H2 107.2 109.6
O5 C1 H1 109.3 109.5
O5 C1 H12 109.1 109.5
C1 O5 C5 120.4 114.1
H1 C1 H12 110.0 109.5
C3 C2 F2 109.6 109.5
C3 C2 H2 109.0 109.5
C2 C3 C4 112.8 109.0
C2 C3 O3 109.4 109.6
C2 C3 H3 107.4 109.5
F2 C2 H2 108.7 109.6
C4 C3 O3 109.9 109.6
C4 C3 H3 106.8 109.5
C3 C4 C5 112.6 109.2
C3 C4 O4 109.0 109.6
C3 C4 H4 107.6 109.5
O3 C3 H3 110.4 109.6
C3 O3 HO3 109.5 114.0
C5 C4 O4 109.3 109.5
C5 C4 H4 107.3 109.5
C4 C5 O5 112.3 109.4
C4 C5 H51 108.5 109.4
C4 C5 H52 107.9 109.4
O4 C4 H4 111.0 109.6
C4 O4 HO4 109.5 114.1
O5 C5 H51 108.5 109.5
O5 C5 H52 107.9 109.5
H51 C5 H52 111.7 109.6

Torsion Angles for DFX

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O5 C1 C2 H1 240.0 240.0
O5 C1 C2 H12 119.7 120.0
C2 C1 O5 C5 347.3 298.8
H1 C1 C2 H12 239.8 240.0
C3 C2 C1 F2 237.6 240.1
C3 C2 C1 H2 118.9 119.9
C1 C2 C3 C4 311.8 303.0
C1 C2 C3 O3 189.1 183.1
C1 C2 C3 H3 69.2 62.8
F2 C2 C1 H2 241.3 239.8
C2 C1 O5 H1 120.0 120.0
C2 C1 O5 H12 240.3 240.0
O5 C1 C2 C3 57.6 57.6
O5 C1 C2 F2 180.0 177.5
O5 C1 C2 H2 298.7 297.7
H1 C1 O5 H12 120.3 120.0
C4 C5 O5 C1 320.7 61.2
C1 O5 C5 H51 200.7 301.2
C1 O5 C5 H52 79.5 181.1
C2 C1 H1 O5 239.5 240.1
C2 C1 H1 H12 119.7 120.0
H1 C1 C2 C3 177.6 177.6
H1 C1 C2 F2 300.0 297.5
H1 C1 C2 H2 58.7 57.7
O5 C1 H1 H12 240.3 240.0
H1 C1 O5 C5 227.3 178.8
C2 C1 H12 O5 120.3 119.9
C2 C1 H12 H1 240.2 240.0
H12 C1 C2 C3 297.9 297.6
H12 C1 C2 F2 60.2 57.5
H12 C1 C2 H2 178.9 177.7
O5 C1 H12 H1 119.9 120.0
H12 C1 O5 C5 107.1 58.8
C3 C2 C1 O5 57.6 57.6
C3 C2 C1 H1 177.6 177.6
C3 C2 C1 H12 297.9 297.6
C1 C2 C3 F2 123.4 119.9
C1 C2 C3 H2 242.2 240.0
F2 C2 C3 H2 118.8 120.1
C4 C3 C2 O3 122.7 119.9
C4 C3 C2 H3 242.5 240.2
C2 C3 C4 C5 356.7 56.9
C2 C3 C4 O4 118.2 176.9
C2 C3 C4 H4 238.7 297.1
O3 C3 C2 H3 119.9 120.3
C2 C3 O3 HO3 20.3 300.0
F2 C2 C1 O5 180.0 177.5
F2 C2 C1 H1 300.0 297.5
F2 C2 C1 H12 60.2 57.5
C1 C2 F2 C3 236.8 240.3
C1 C2 F2 H2 117.8 120.2
C3 C2 F2 H2 241.0 239.9
F2 C2 C3 C4 188.4 183.2
F2 C2 C3 O3 65.7 63.2
F2 C2 C3 H3 305.9 302.9
H2 C2 C1 O5 298.7 297.7
H2 C2 C1 H1 58.7 57.7
H2 C2 C1 H12 178.9 177.7
C1 C2 H2 C3 120.3 119.7
C1 C2 H2 F2 239.6 239.9
C3 C2 H2 F2 119.4 120.1
H2 C2 C3 C4 69.6 63.0
H2 C2 C3 O3 306.9 303.1
H2 C2 C3 H3 187.1 182.8
C4 C3 C2 F2 188.4 183.2
C4 C3 C2 H2 69.6 63.0
C2 C3 C4 O3 237.6 240.1
C2 C3 C4 H3 117.8 119.8
O3 C3 C4 H3 240.2 239.7
C4 C3 O3 HO3 255.9 180.4
C5 C4 C3 O4 238.6 240.1
C5 C4 C3 H4 118.0 119.9
C3 C4 C5 O5 46.8 302.4
C3 C4 C5 H51 166.8 62.4
C3 C4 C5 H52 288.0 182.4
O4 C4 C3 H4 239.5 239.8
C3 C4 O4 HO4 70.6 179.9
O3 C3 C2 F2 65.7 63.2
O3 C3 C2 H2 306.9 303.1
C2 C3 O3 C4 124.4 119.6
C2 C3 O3 H3 242.0 239.8
C4 C3 O3 H3 117.6 120.2
O3 C3 C4 C5 119.1 176.8
O3 C3 C4 O4 240.5 296.8
O3 C3 C4 H4 1.0 57.0
H3 C3 C2 F2 305.9 302.9
H3 C3 C2 H2 187.1 182.8
C2 C3 H3 C4 238.7 240.5
C2 C3 H3 O3 119.2 120.3
C4 C3 H3 O3 240.5 239.8
H3 C3 C4 C5 238.9 297.1
H3 C3 C4 O4 0.4 57.1
H3 C3 C4 H4 120.9 177.3
H3 C3 O3 HO3 138.3 60.3
C1 O5 C5 C4 320.7 61.2
C5 C4 C3 O3 119.1 176.8
C5 C4 C3 H3 238.9 297.1
C3 C4 C5 O4 121.3 120.0
C3 C4 C5 H4 241.8 240.2
O4 C4 C5 H4 120.5 120.2
C5 C4 O4 HO4 194.0 299.7
O5 C5 C4 H51 240.0 240.0
O5 C5 C4 H52 118.8 120.0
H51 C5 C4 H52 238.8 240.0
O4 C4 C3 O3 240.5 296.8
O4 C4 C3 H3 0.4 57.1
C3 C4 O4 C5 236.5 240.3
C3 C4 O4 H4 118.4 120.1
C5 C4 O4 H4 241.8 239.9
O4 C4 C5 O5 285.5 182.5
O4 C4 C5 H51 45.5 302.4
O4 C4 C5 H52 166.7 62.5
H4 C4 C3 O3 1.0 57.0
H4 C4 C3 H3 120.9 177.3
C3 C4 H4 C5 121.4 119.7
C3 C4 H4 O4 240.8 239.8
C5 C4 H4 O4 119.4 120.2
H4 C4 C5 O5 165.0 62.3
H4 C4 C5 H51 285.0 182.2
H4 C4 C5 H52 46.2 302.3
H4 C4 O4 HO4 312.2 59.8
C5 O5 C1 H1 227.3 178.8
C5 O5 C1 H12 107.1 58.8
O5 C5 C4 O4 285.5 182.5
O5 C5 C4 H4 165.0 62.3
C4 C5 O5 H51 120.0 119.9
C4 C5 O5 H52 241.2 240.1
H51 C5 O5 H52 121.2 120.1
H51 C5 C4 O4 45.5 302.4
H51 C5 C4 H4 285.0 182.2
C4 C5 H51 O5 237.7 240.1
C4 C5 H51 H52 118.8 120.0
O5 C5 H51 H52 241.2 239.9
H52 C5 C4 O4 166.7 62.5
H52 C5 C4 H4 46.2 302.3
C4 C5 H52 O5 121.6 119.9
C4 C5 H52 H51 240.8 240.0
O5 C5 H52 H51 119.2 120.1
HO3 O3 C3 H3 138.3 60.3
HO4 O4 C4 H4 312.2 59.8