PDB Chemical Component DFP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DFP

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.545	1.521
C1	C3	1.572	1.521
C1	O1P	1.453	1.417
C1	H1	1.115	1.095
C2	H21	1.115	1.094
C2	H22	1.115	1.095
C2	H23	1.114	1.096
C3	H31	1.116	1.095
C3	H32	1.114	1.095
C3	H33	1.114	1.096
C1'	C2'	1.548	1.521
C1'	C3'	1.577	1.522
C1'	O2P	1.486	1.417
C1'	H1'	1.115	1.095
C2'	H2'1	1.115	1.094
C2'	H2'2	1.115	1.095
C2'	H2'3	1.114	1.095
C3'	H3'1	1.115	1.094
C3'	H3'2	1.114	1.095
C3'	H3'3	1.115	1.096
P	O1P	1.642	1.627
P	O2P	1.675	1.627
P	O3P	1.510	1.507
HP1	P	1.420	1.412

Bond Angles for DFP

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C3	116.9	111.9
C2	C1	O1P	107.5	109.2
C2	C1	H1	106.5	109.5
C1	C2	H21	116.8	111.3
C1	C2	H22	109.5	110.4
C1	C2	H23	109.5	111.1
C3	C1	O1P	111.5	109.2
C3	C1	H1	102.0	109.5
C1	C3	H31	116.8	111.3
C1	C3	H32	109.5	110.4
C1	C3	H33	109.5	111.1
O1P	C1	H1	112.4	107.4
C1	O1P	P	118.2	117.4
H21	C2	H22	109.5	108.6
H21	C2	H23	109.5	108.6
H22	C2	H23	100.7	106.6
H31	C3	H32	109.5	108.6
H31	C3	H33	109.6	108.6
H32	C3	H33	100.6	106.7
C2'	C1'	C3'	108.0	111.9
C2'	C1'	O2P	109.3	109.2
C2'	C1'	H1'	114.1	109.5
C1'	C2'	H2'1	108.0	111.3
C1'	C2'	H2'2	112.7	110.3
C1'	C2'	H2'3	112.7	111.1
C3'	C1'	O2P	118.0	109.2
C3'	C1'	H1'	104.4	109.5
C1'	C3'	H3'1	108.1	111.3
C1'	C3'	H3'2	112.8	110.4
C1'	C3'	H3'3	112.8	111.1
O2P	C1'	H1'	103.1	107.5
C1'	O2P	P	133.2	118.3
H2'1	C2'	H2'2	112.8	108.7
H2'1	C2'	H2'3	112.8	108.7
H2'2	C2'	H2'3	97.7	106.6
H3'1	C3'	H3'2	112.7	108.6
H3'1	C3'	H3'3	112.7	108.6
H3'2	C3'	H3'3	97.7	106.7
O1P	P	O2P	108.6	101.3
O1P	P	O3P	109.2	111.8
O2P	P	O3P	112.3	111.3

Torsion Angles for DFP

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C3	C1	C2	O1P	126.1	238.9
C3	C1	C2	H1	246.8	121.6
C2	C1	C3	H31	180.0	299.5
C2	C1	C3	H32	305.2	178.8
C2	C1	C3	H33	54.7	60.6
O1P	C1	C2	H1	120.7	242.7
C2	C1	O1P	P	233.2	60.0
H21	C2	C1	H22	234.8	239.3
H21	C2	C1	H23	125.3	121.2
H22	C2	C1	H23	250.5	241.9
C2	C1	C3	O1P	235.9	121.1
C2	C1	C3	H1	115.7	238.4
C3	C1	C2	H21	180.0	60.6
C3	C1	C2	H22	305.2	181.3
C3	C1	C2	H23	54.8	299.4
O1P	C1	C3	H1	239.8	117.3
C3	C1	O1P	P	103.9	182.7
H31	C3	C1	H32	234.8	120.7
H31	C3	C1	H33	125.3	238.8
H32	C3	C1	H33	250.5	118.1
C2	C1	O1P	C3	129.3	237.3
C2	C1	O1P	H1	243.1	118.7
O1P	C1	C2	H21	53.9	181.7
O1P	C1	C2	H22	179.1	302.4
O1P	C1	C2	H23	288.6	60.5
C3	C1	O1P	H1	113.8	241.4
O1P	C1	C3	H31	304.2	178.4
O1P	C1	C3	H32	69.3	57.7
O1P	C1	C3	H33	178.8	299.6
C1	O1P	P	O2P	78.1	192.5
C1	O1P	P	O3P	315.3	73.9
C2	C1	H1	C3	237.0	123.1
C2	C1	H1	O1P	117.4	241.5
H1	C1	C2	H21	293.2	299.0
H1	C1	C2	H22	58.4	59.7
H1	C1	C2	H23	167.9	177.8
C3	C1	H1	O1P	240.5	118.5
H1	C1	C3	H31	64.3	61.1
H1	C1	C3	H32	189.5	300.4
H1	C1	C3	H33	299.0	182.2
H1	C1	O1P	P	350.1	301.3
H21	C2	C1	C3	180.0	60.6
H21	C2	C1	O1P	53.9	181.7
H21	C2	C1	H1	293.2	299.0
C1	C2	H21	H22	125.2	121.7
C1	C2	H21	H23	234.8	237.4
H22	C2	H21	H23	109.5	115.6
H22	C2	C1	C3	305.2	181.3
H22	C2	C1	O1P	179.1	302.4
H22	C2	C1	H1	58.4	59.7
C1	C2	H22	H21	230.7	237.7
C1	C2	H22	H23	115.3	120.8
H21	C2	H22	H23	244.7	243.1
H23	C2	C1	C3	54.8	299.4
H23	C2	C1	O1P	288.6	60.5
H23	C2	C1	H1	167.9	177.8
C1	C2	H23	H21	129.4	122.7
C1	C2	H23	H22	244.7	239.6
H21	C2	H23	H22	115.3	116.9
H31	C3	C1	O1P	304.2	178.4
H31	C3	C1	H1	64.3	61.1
C1	C3	H31	H32	125.2	238.2
C1	C3	H31	H33	234.7	122.6
H32	C3	H31	H33	109.5	244.4
H32	C3	C1	O1P	69.3	57.7
H32	C3	C1	H1	189.5	300.4
C1	C3	H32	H31	230.7	122.3
C1	C3	H32	H33	115.3	239.2
H31	C3	H32	H33	244.6	116.9
H33	C3	C1	O1P	178.8	299.6
H33	C3	C1	H1	299.0	182.2
C1	C3	H33	H31	129.4	237.3
C1	C3	H33	H32	244.7	120.4
H31	C3	H33	H32	115.3	243.1
C3'	C1'	C2'	O2P	129.6	238.9
C3'	C1'	C2'	H1'	244.4	121.5
C2'	C1'	C3'	H3'1	180.0	299.5
C2'	C1'	C3'	H3'2	305.2	178.8
C2'	C1'	C3'	H3'3	54.8	60.7
O2P	C1'	C2'	H1'	114.8	242.6
C2'	C1'	O2P	P	157.3	60.0
H2'1	C2'	C1'	H2'2	234.8	239.3
H2'1	C2'	C1'	H2'3	125.3	121.2
H2'2	C2'	C1'	H2'3	250.6	241.9
C2'	C1'	C3'	O2P	235.4	121.0
C2'	C1'	C3'	H1'	121.8	238.5
C3'	C1'	C2'	H2'1	180.0	60.6
C3'	C1'	C2'	H2'2	305.3	181.3
C3'	C1'	C2'	H2'3	54.7	299.4
O2P	C1'	C3'	H1'	246.3	117.4
C3'	C1'	O2P	P	33.4	182.7
H3'1	C3'	C1'	H3'2	234.8	120.7
H3'1	C3'	C1'	H3'3	125.2	238.8
H3'2	C3'	C1'	H3'3	250.5	118.1
C2'	C1'	O2P	C3'	123.9	237.4
C2'	C1'	O2P	H1'	238.3	118.7
O2P	C1'	C2'	H2'1	50.4	181.7
O2P	C1'	C2'	H2'2	175.7	302.4
O2P	C1'	C2'	H2'3	285.1	60.4
C3'	C1'	O2P	H1'	114.4	241.3
O2P	C1'	C3'	H3'1	304.6	178.5
O2P	C1'	C3'	H3'2	69.8	57.7
O2P	C1'	C3'	H3'3	179.3	299.6
O1P	P	O2P	C1'	138.6	47.5
C1'	O2P	P	O3P	259.5	166.4
C2'	C1'	H1'	C3'	242.3	123.0
C2'	C1'	H1'	O2P	118.4	241.5
H1'	C1'	C2'	H2'1	295.7	299.1
H1'	C1'	C2'	H2'2	60.9	59.8
H1'	C1'	C2'	H2'3	170.3	177.8
C3'	C1'	H1'	O2P	236.1	118.5
H1'	C1'	C3'	H3'1	58.2	61.0
H1'	C1'	C3'	H3'2	183.5	300.3
H1'	C1'	C3'	H3'3	293.0	182.2
H1'	C1'	O2P	P	279.0	301.3
H2'1	C2'	C1'	C3'	180.0	60.6
H2'1	C2'	C1'	O2P	50.4	181.7
H2'1	C2'	C1'	H1'	295.7	299.1
C1'	C2'	H2'1	H2'2	125.2	121.7
C1'	C2'	H2'1	H2'3	234.7	237.4
H2'2	C2'	H2'1	H2'3	109.5	115.7
H2'2	C2'	C1'	C3'	305.3	181.3
H2'2	C2'	C1'	O2P	175.7	302.4
H2'2	C2'	C1'	H1'	60.9	59.8
C1'	C2'	H2'2	H2'1	237.4	237.7
C1'	C2'	H2'2	H2'3	118.6	120.7
H2'1	C2'	H2'2	H2'3	241.2	243.0
H2'3	C2'	C1'	C3'	54.7	299.4
H2'3	C2'	C1'	O2P	285.1	60.4
H2'3	C2'	C1'	H1'	170.3	177.8
C1'	C2'	H2'3	H2'1	122.7	122.8
C1'	C2'	H2'3	H2'2	241.4	239.7
H2'1	C2'	H2'3	H2'2	118.7	117.0
H3'1	C3'	C1'	O2P	304.6	178.5
H3'1	C3'	C1'	H1'	58.2	61.0
C1'	C3'	H3'1	H3'2	125.3	238.3
C1'	C3'	H3'1	H3'3	234.7	122.6
H3'2	C3'	H3'1	H3'3	109.4	244.3
H3'2	C3'	C1'	O2P	69.8	57.7
H3'2	C3'	C1'	H1'	183.5	300.3
C1'	C3'	H3'2	H3'1	237.3	122.3
C1'	C3'	H3'2	H3'3	118.7	239.2
H3'1	C3'	H3'2	H3'3	241.4	117.0
H3'3	C3'	C1'	O2P	179.3	299.6
H3'3	C3'	C1'	H1'	293.0	182.2
C1'	C3'	H3'3	H3'1	122.7	237.3
C1'	C3'	H3'3	H3'2	241.3	120.3
H3'1	C3'	H3'3	H3'2	118.6	243.0
P	O1P	C1	H1	350.1	301.3
C1'	O2P	P	O1P	138.6	47.5
O2P	P	O1P	O3P	122.8	118.6
P	O2P	C1'	H1'	279.0	301.3
O1P	P	O2P	O3P	239.1	241.1
O1P	P	O3P	O2P	120.5	112.5