PDB Chemical Component DFN

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DFN

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C28	N22	1.457	1.465
C28	H281	1.115	1.090
C28	H282	1.115	1.090
C28	H283	1.115	1.090
N22	C48	1.369	1.356
N22	C21	1.375	1.381
C48	C19	1.383	1.377
C48	H48	1.103	1.081
C21	C24	1.407	1.391
C21	C20	1.412	1.404
C24	C31	1.401	1.379
C24	H24	1.103	1.079
C31	C29	1.391	1.389
C31	H31	1.103	1.080
C29	F39	1.334	1.351
C29	C23	1.399	1.380
C20	C23	1.405	1.393
C20	C19	1.436	1.475
C23	H23	1.103	1.080
C19	C01	1.438	1.469
C01	C02	1.360	1.388
C01	C05	1.489	1.483
C02	C03	1.483	1.474
C02	C08	1.469	1.477
C03	O06	1.238	1.215
C03	N04	1.349	1.343
N04	C05	1.344	1.345
N04	H04	1.020	0.970
C05	O07	1.224	1.214
C08	C09	1.408	1.396
C08	C13	1.405	1.398
C09	C10	1.413	1.386
C09	H09	1.103	1.080
C10	C11	1.395	1.390
C10	N15	1.365	1.397
C11	C12	1.396	1.383
C11	H11	1.103	1.080
C12	C13	1.403	1.379
C12	H12	1.103	1.080
C13	H13	1.103	1.079
N15	C26	1.462	1.465
N15	H15	1.020	0.969
C26	C34	1.534	1.530
C26	H261	1.115	1.090
C26	H262	1.115	1.089
C34	O41	1.436	1.429
C34	C40	1.526	1.530
C34	H34	1.115	1.090
O41	H41	0.950	0.966
C40	O45	1.425	1.430
C40	H401	1.115	1.090
C40	H402	1.115	1.089
O45	H45	0.950	0.967

Bond Angles for DFN

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N22	C28	H281	106.9	109.5
N22	C28	H282	124.4	109.5
N22	C28	H283	106.9	109.5
C28	N22	C48	124.4	124.8
C28	N22	C21	125.8	124.7
H281	C28	H282	106.9	109.4
H281	C28	H283	102.7	109.4
H282	C28	H283	107.0	109.5
C48	N22	C21	109.8	110.5
N22	C48	C19	109.7	109.5
N22	C48	H48	124.7	125.2
N22	C21	C24	129.7	132.9
N22	C21	C20	107.0	107.7
C19	C48	H48	125.6	125.3
C48	C19	C20	105.9	106.3
C48	C19	C01	121.5	126.8
C24	C21	C20	123.2	119.4
C21	C24	C31	117.9	120.0
C21	C24	H24	121.2	120.1
C21	C20	C23	117.6	120.2
C21	C20	C19	107.6	106.0
C31	C24	H24	120.9	120.0
C24	C31	C29	119.3	120.6
C24	C31	H31	120.7	119.7
C29	C31	H31	120.0	119.7
C31	C29	F39	118.9	119.9
C31	C29	C23	122.8	120.2
F39	C29	C23	118.3	119.9
C29	C23	C20	119.2	119.6
C29	C23	H23	120.2	120.2
C23	C20	C19	134.8	133.8
C20	C23	H23	120.6	120.2
C20	C19	C01	132.5	126.8
C19	C01	C02	132.2	127.0
C19	C01	C05	121.3	127.0
C02	C01	C05	106.4	106.0
C01	C02	C03	107.5	106.2
C01	C02	C08	131.4	126.9
C01	C05	N04	107.6	108.4
C01	C05	O07	126.7	125.8
C03	C02	C08	121.1	126.9
C02	C03	O06	126.0	125.6
C02	C03	N04	107.0	108.8
C02	C08	C09	120.1	120.1
C02	C08	C13	122.1	120.1
O06	C03	N04	126.9	125.6
C03	N04	C05	111.5	110.6
C03	N04	H04	124.4	124.7
C05	N04	H04	124.1	124.7
N04	C05	O07	125.7	125.7
C09	C08	C13	117.6	119.8
C08	C09	C10	121.9	119.8
C08	C09	H09	118.8	120.1
C08	C13	C12	121.0	120.0
C08	C13	H13	119.6	120.0
C10	C09	H09	119.2	120.1
C09	C10	C11	118.8	120.0
C09	C10	N15	123.7	120.0
C11	C10	N15	117.5	120.0
C10	C11	C12	120.4	120.2
C10	C11	H11	119.8	119.9
C10	N15	C26	124.5	120.0
C10	N15	H15	106.9	120.1
C12	C11	H11	119.9	119.9
C11	C12	C13	120.2	120.3
C11	C12	H12	119.6	119.9
C13	C12	H12	120.2	119.9
C12	C13	H13	119.4	120.0
C26	N15	H15	106.9	120.0
N15	C26	C34	107.2	109.5
N15	C26	H261	113.0	109.5
N15	C26	H262	113.1	109.5
C34	C26	H261	113.1	109.5
C34	C26	H262	113.1	109.5
C26	C34	O41	109.2	109.5
C26	C34	C40	109.9	109.5
C26	C34	H34	109.8	109.4
H261	C26	H262	97.4	109.5
O41	C34	C40	110.6	109.5
O41	C34	H34	109.0	109.5
C34	O41	H41	109.2	106.8
C40	C34	H34	108.3	109.5
C34	C40	O45	110.1	109.4
C34	C40	H401	112.0	109.5
C34	C40	H402	112.0	109.5
O45	C40	H401	111.9	109.4
O45	C40	H402	112.0	109.5
C40	O45	H45	110.1	106.8
H401	C40	H402	98.4	109.5

Torsion Angles for DFN

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
H281	C28	N22	H282	234.8	240.0
H281	C28	N22	H283	109.5	120.0
H282	C28	N22	H283	234.7	240.0
C48	N22	C28	C21	179.1	180.4
C28	N22	C48	C19	179.7	180.0
C28	N22	C48	H48	359.7	359.9
C28	N22	C21	C24	358.9	0.7
C28	N22	C21	C20	179.6	179.9
N22	C28	H281	H282	135.2	120.1
N22	C28	H281	H283	247.6	240.0
H281	C28	N22	C48	54.7	90.0
H281	C28	N22	C21	235.7	269.7
H282	C28	H281	H283	112.4	120.0
N22	C28	H282	H281	234.8	240.0
N22	C28	H282	H283	125.3	120.0
H282	C28	N22	C48	180.0	210.0
H282	C28	N22	C21	0.9	29.7
H281	C28	H282	H283	250.5	240.1
N22	C28	H283	H281	112.4	120.0
N22	C28	H283	H282	224.7	239.9
H283	C28	N22	C48	305.3	330.1
H283	C28	N22	C21	126.2	149.7
H281	C28	H283	H282	112.4	119.9
C48	N22	C28	H281	54.7	90.0
C48	N22	C28	H282	180.0	210.0
C48	N22	C28	H283	305.3	330.1
C28	N22	C48	C21	180.8	179.7
C48	N22	C21	C24	179.7	180.4
C48	N22	C21	C20	0.4	359.6
C19	C48	N22	H48	180.0	180.0
N22	C48	C19	C20	1.3	0.0
N22	C48	C19	C01	178.3	179.9
C21	N22	C28	H281	235.7	269.7
C21	N22	C28	H282	0.9	29.7
C21	N22	C28	H283	126.2	149.7
C28	N22	C21	C48	179.2	180.3
C21	N22	C48	C19	358.9	0.3
C21	N22	C48	H48	178.9	180.2
C24	C21	N22	C20	179.4	180.8
N22	C21	C24	C31	180.5	179.6
N22	C21	C24	H24	0.5	359.4
N22	C21	C20	C23	179.8	180.2
N22	C21	C20	C19	0.5	0.4
C19	C48	N22	C21	358.9	0.3
N22	C48	C19	H48	180.0	180.0
C21	C20	C19	C48	358.9	359.7
C23	C20	C19	C48	179.7	180.0
C20	C19	C48	C01	183.0	180.1
C48	C19	C01	C02	217.1	75.1
C48	C19	C01	C05	32.0	254.7
H48	C48	N22	C21	178.9	180.2
N22	C48	H48	C19	180.0	180.0
H48	C48	C19	C20	181.3	180.0
H48	C48	C19	C01	358.3	360.0
N22	C21	C24	C20	180.7	179.1
C24	C21	C20	C23	0.4	359.5
C24	C21	C20	C19	181.0	179.7
C31	C24	C21	H24	180.0	180.2
C21	C24	C31	C29	0.2	359.8
C21	C24	C31	H31	180.1	179.8
N22	C21	C20	C24	179.4	180.7
C48	C19	C20	C21	358.9	359.7
C20	C21	C24	C31	359.7	0.5
C20	C21	C24	H24	179.8	180.3
C29	C23	C20	C21	359.5	0.3
C23	C20	C21	C19	179.4	179.7
C21	C20	C23	H23	179.5	180.3
C21	C20	C19	C01	182.4	179.8
C31	C24	C21	C20	359.7	0.5
C21	C24	C31	H24	180.0	179.8
C29	C31	C24	H31	180.0	180.1
C24	C31	C29	F39	179.0	180.0
C24	C31	C29	C23	359.8	359.9
H24	C24	C21	C20	179.8	180.3
C21	C24	H24	C31	180.0	180.2
H24	C24	C31	C29	180.1	180.0
H24	C24	C31	H31	0.1	359.9
C29	C31	C24	H24	180.1	180.0
C24	C31	C29	H31	180.0	179.9
F39	C29	C31	C23	179.2	180.0
C31	C29	C23	C20	0.4	0.0
C31	C29	C23	H23	180.4	180.0
H31	C31	C24	H24	0.1	359.9
C24	C31	H31	C29	180.0	180.1
H31	C31	C29	F39	359.0	0.0
H31	C31	C29	C23	179.8	180.0
F39	C29	C31	H31	359.0	0.0
C31	C29	F39	C23	180.7	180.0
F39	C29	C23	C20	181.1	180.0
F39	C29	C23	H23	1.1	0.0
C21	C20	C23	C29	359.5	0.3
C23	C29	C31	H31	179.8	180.0
C31	C29	C23	F39	179.3	180.0
C29	C23	C20	C19	178.7	180.0
C20	C23	C29	H23	180.0	180.0
C48	C19	C20	C23	179.7	180.0
C21	C20	C23	C19	180.8	180.3
C29	C23	C20	H23	180.0	180.0
C23	C20	C19	C01	3.2	0.1
C20	C19	C48	H48	181.3	180.0
C48	C19	C20	C01	176.5	179.9
C21	C20	C19	C23	179.2	179.7
C19	C20	C23	H23	358.7	359.9
C20	C19	C01	C02	33.2	255.0
C20	C19	C01	C05	208.1	74.6
C29	C23	H23	C20	180.0	180.0
H23	C23	C20	C19	358.7	359.9
C01	C19	C48	H48	358.3	360.0
C48	C19	C01	C20	183.9	180.1
C02	C01	C19	C05	185.1	180.4
C19	C01	C02	C03	176.4	180.0
C19	C01	C02	C08	358.0	359.9
C19	C01	C05	N04	183.0	179.8
C19	C01	C05	O07	3.7	0.3
C19	C01	C02	C05	175.5	179.7
C02	C01	C05	N04	359.1	359.5
C02	C01	C05	O07	179.8	180.0
C03	C02	C01	C08	178.4	180.1
C01	C02	C03	O06	179.9	180.0
C01	C02	C03	N04	359.3	360.0
C01	C02	C08	C09	45.9	244.7
C01	C02	C08	C13	221.8	65.1
C19	C01	C05	C02	183.9	180.3
C05	C01	C02	C03	1.0	0.3
C05	C01	C02	C08	182.5	180.2
C03	N04	C05	C01	0.5	0.5
C01	C05	N04	H04	180.5	180.2
N04	C05	C01	O07	179.2	179.5
C03	C02	C01	C05	1.0	0.3
C01	C02	C03	C08	181.4	179.9
C03	C02	C08	C09	227.7	64.6
C03	C02	C08	C13	43.6	245.0
O06	C03	C02	N04	180.6	180.1
C02	C03	N04	C05	0.1	359.7
C02	C03	N04	H04	180.1	180.0
C08	C02	C01	C05	182.5	180.2
C01	C02	C08	C03	178.2	180.1
C08	C02	C03	O06	358.6	0.1
C08	C02	C03	N04	177.9	180.1
C09	C08	C02	C13	184.1	179.6
C02	C08	C09	C10	179.4	179.8
C02	C08	C09	H09	359.4	0.4
C02	C08	C13	C12	181.3	180.0
C02	C08	C13	H13	1.2	359.9
O06	C03	C02	C08	358.6	0.1
C02	C03	O06	N04	179.2	179.9
O06	C03	N04	C05	179.5	179.6
O06	C03	N04	H04	359.4	360.0
C01	C05	N04	C03	0.5	0.5
N04	C03	C02	C08	177.9	180.1
C02	C03	N04	O06	180.7	180.1
C05	N04	C03	H04	180.0	179.7
C03	N04	C05	O07	179.7	180.0
C01	C05	N04	O07	180.7	180.5
C03	N04	C05	H04	180.0	180.3
C03	N04	H04	C05	180.0	179.6
H04	N04	C05	O07	359.8	359.7
C01	C05	O07	N04	179.1	179.4
O07	C05	N04	H04	359.8	359.7
C02	C08	C09	C13	176.1	180.4
C09	C08	C13	C12	357.3	0.3
C09	C08	C13	H13	177.2	180.2
C10	C09	C08	H09	180.0	179.4
C08	C09	C10	C11	358.2	0.6
C08	C09	C10	N15	178.0	180.3
C02	C08	C13	C09	184.0	179.6
C13	C08	C09	C10	3.3	359.4
C13	C08	C09	H09	183.3	180.0
C11	C12	C13	C08	0.8	360.0
C08	C13	C12	H12	180.8	179.9
C12	C13	C08	H13	180.0	180.1
C10	C09	C08	C13	3.3	359.4
C08	C09	C10	H09	180.0	180.6
C11	C10	C09	N15	180.1	180.3
C09	C10	C11	C12	359.8	359.7
C09	C10	C11	H11	179.8	179.7
C09	C10	N15	C26	0.9	180.3
C09	C10	N15	H15	235.6	0.3
H09	C09	C08	C13	183.3	180.0
C08	C09	H09	C10	180.0	179.4
H09	C09	C10	C11	178.1	180.0
H09	C09	C10	N15	358.0	359.7
C11	C10	C09	H09	178.1	180.0
C09	C10	C11	N15	179.9	179.7
C11	C10	N15	C26	180.8	0.0
C11	C10	N15	H15	55.5	180.0
C12	C11	C10	H11	180.0	180.0
C10	C11	C12	C13	0.8	360.0
C10	C11	C12	H12	180.8	180.0
N15	C10	C09	H09	358.0	359.7
C09	C10	N15	C11	180.1	180.3
N15	C10	C11	C12	179.9	180.0
N15	C10	C11	H11	359.9	360.0
C26	N15	C10	H15	125.3	180.0
C10	N15	C26	C34	282.7	180.0
C10	N15	C26	H261	157.4	300.0
C10	N15	C26	H262	48.0	60.0
C08	C13	C12	C11	0.8	360.0
C12	C11	C10	N15	179.9	180.0
C10	C11	C12	H11	180.0	180.0
C13	C12	C11	H12	180.0	179.9
C11	C12	C13	H13	180.8	180.1
H11	C11	C10	N15	359.9	360.0
C10	C11	H11	C12	180.0	180.0
H11	C11	C12	C13	180.8	180.0
H11	C11	C12	H12	0.8	0.1
C08	C13	C12	H13	180.0	179.9
C13	C12	C11	H11	180.8	180.0
C11	C12	C13	H12	180.0	180.1
H12	C12	C11	H11	0.8	0.1
C11	C12	H12	C13	180.0	179.9
H12	C12	C13	H13	0.8	0.0
C08	C13	H13	C12	180.0	180.1
H13	C13	C12	H12	0.8	0.0
C10	N15	C26	H15	234.8	180.0
C34	C26	N15	H261	125.3	240.0
C34	C26	N15	H262	234.7	120.0
N15	C26	C34	O41	287.6	300.0
N15	C26	C34	C40	166.1	180.0
N15	C26	C34	H34	47.1	60.0
H261	C26	N15	H262	109.4	240.0
C10	N15	H15	C26	135.3	180.0
H15	N15	C26	C34	48.0	0.0
H15	N15	C26	H261	282.7	120.0
H15	N15	C26	H262	173.3	240.0
C34	C26	N15	H15	48.0	0.0
N15	C26	C34	H261	234.7	120.0
N15	C26	C34	H262	125.3	240.0
H261	C26	C34	H262	250.6	120.0
O41	C34	C26	C40	121.5	120.0
O41	C34	C26	H34	240.6	240.0
C26	C34	O41	H41	180.0	300.0
C40	C34	C26	H34	119.0	120.0
C26	C34	C40	O45	66.6	185.0
C26	C34	C40	H401	301.4	305.0
C26	C34	C40	H402	191.9	65.0
H261	C26	N15	H15	282.7	120.0
N15	C26	H261	C34	122.1	240.0
N15	C26	H261	H262	241.0	120.0
C34	C26	H261	H262	119.0	240.0
H261	C26	C34	O41	52.9	180.0
H261	C26	C34	C40	291.4	60.0
H261	C26	C34	H34	172.4	300.0
H262	C26	N15	H15	173.3	240.0
N15	C26	H262	C34	237.9	120.0
N15	C26	H262	H261	118.9	240.0
C34	C26	H262	H261	241.0	120.0
H262	C26	C34	O41	162.3	60.0
H262	C26	C34	C40	40.8	300.0
H262	C26	C34	H34	281.8	180.0
O41	C34	C26	H261	52.9	180.0
O41	C34	C26	H262	162.3	60.0
C26	C34	O41	C40	238.9	240.0
C26	C34	O41	H34	119.9	120.0
C40	C34	O41	H34	241.0	240.0
O41	C34	C40	O45	306.0	65.0
O41	C34	C40	H401	180.7	185.0
O41	C34	C40	H402	71.2	305.0
C40	C34	C26	H261	291.4	60.0
C40	C34	C26	H262	40.8	300.0
C26	C34	C40	O41	120.7	120.0
C26	C34	C40	H34	240.1	240.0
O41	C34	C40	H34	119.4	120.0
C40	C34	O41	H41	301.1	60.0
O45	C40	C34	H401	125.2	240.0
O45	C40	C34	H402	234.7	120.0
C34	C40	O45	H45	180.0	180.0
H401	C40	C34	H402	109.5	240.0
H34	C34	C26	H261	172.4	300.0
H34	C34	C26	H262	281.8	180.0
C26	C34	H34	O41	240.4	240.0
C26	C34	H34	C40	120.0	120.0
O41	C34	H34	C40	239.6	240.0
H34	C34	O41	H41	60.1	180.0
H34	C34	C40	O45	186.6	305.0
H34	C34	C40	H401	61.3	65.0
H34	C34	C40	H402	311.8	185.0
H41	O41	C34	C40	301.1	60.0
H41	O41	C34	H34	60.1	180.0
O45	C40	C34	H34	186.6	305.0
C34	C40	O45	H401	234.7	120.0
C34	C40	O45	H402	125.3	240.0
H401	C40	O45	H402	250.6	120.0
H401	C40	C34	H34	61.3	65.0
C34	C40	H401	O45	124.2	240.0
C34	C40	H401	H402	242.1	120.0
O45	C40	H401	H402	117.9	240.0
H401	C40	O45	H45	305.3	60.0
H402	C40	C34	H34	311.8	185.0
C34	C40	H402	O45	235.7	120.0
C34	C40	H402	H401	117.9	240.0
O45	C40	H402	H401	242.2	120.0
H402	C40	O45	H45	54.7	300.0
H45	O45	C40	H401	305.3	60.0
H45	O45	C40	H402	54.7	300.0