PDB Chemical Component DF5
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DF5
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C16 |
O3 |
1.452 |
1.429 |
| O3 |
C13 |
1.381 |
1.358 |
| C14 |
C13 |
1.398 |
1.397 |
| C14 |
C15 |
1.403 |
1.362 |
| C13 |
C12 |
1.407 |
1.378 |
| C15 |
C10 |
1.421 |
1.401 |
| C12 |
C11 |
1.404 |
1.403 |
| C10 |
C11 |
1.429 |
1.416 |
| C10 |
N |
1.430 |
1.348 |
| C11 |
C9 |
1.488 |
1.409 |
| O |
C6 |
1.263 |
1.215 |
| N |
C6 |
1.439 |
1.365 |
| N |
C7 |
1.453 |
1.323 |
| C6 |
C5 |
1.513 |
1.479 |
| C9 |
C8 |
1.499 |
1.369 |
| C5 |
C |
1.413 |
1.396 |
| C5 |
C4 |
1.394 |
1.396 |
| C7 |
C8 |
1.524 |
1.388 |
| C |
C1 |
1.410 |
1.379 |
| C4 |
C3 |
1.392 |
1.379 |
| C1 |
C2 |
1.409 |
1.383 |
| C3 |
C2 |
1.415 |
1.384 |
| C2 |
S |
1.700 |
1.762 |
| N1 |
S |
1.591 |
1.656 |
| O2 |
S |
1.404 |
1.421 |
| S |
O1 |
1.427 |
1.421 |
| N1 |
H1 |
0.999 |
0.970 |
| N1 |
H2 |
1.000 |
0.970 |
| C1 |
H3 |
1.079 |
1.080 |
| C3 |
H4 |
1.080 |
1.081 |
| C4 |
H5 |
1.080 |
1.080 |
| C |
H6 |
1.080 |
1.080 |
| C15 |
H7 |
1.080 |
1.081 |
| C14 |
H8 |
1.080 |
1.080 |
| C16 |
H9 |
1.100 |
1.090 |
| C16 |
H10 |
1.100 |
1.090 |
| C16 |
H11 |
1.100 |
1.090 |
| C12 |
H12 |
1.079 |
1.080 |
| C9 |
H13 |
1.080 |
1.080 |
| C8 |
H14 |
1.080 |
1.080 |
| C7 |
H15 |
1.080 |
1.081 |
Bond Angles for DF5
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O3 |
C13 |
C12 |
115.4 |
119.8 |
| C14 |
C13 |
C12 |
120.3 |
120.5 |
| C13 |
C14 |
H8 |
120.4 |
119.5 |
| C14 |
C15 |
H7 |
118.9 |
120.0 |
| C13 |
C12 |
C11 |
120.6 |
119.5 |
| C13 |
C12 |
H12 |
119.7 |
120.2 |
| C15 |
C10 |
C11 |
117.4 |
119.3 |
| C10 |
C11 |
C12 |
120.3 |
119.7 |
| C12 |
C11 |
C9 |
117.4 |
121.2 |
| C11 |
C12 |
H12 |
119.7 |
120.3 |
| C10 |
C11 |
C9 |
122.3 |
119.1 |
| C10 |
N |
C7 |
118.7 |
121.1 |
| C11 |
C9 |
C8 |
116.4 |
118.4 |
| C11 |
C9 |
H13 |
121.8 |
120.9 |
| N |
C7 |
C8 |
119.0 |
121.7 |
| N |
C7 |
H15 |
120.5 |
119.1 |
| C8 |
C9 |
H13 |
121.8 |
120.8 |
| C9 |
C8 |
H14 |
120.8 |
120.0 |
| C5 |
C |
H6 |
119.8 |
120.1 |
| C5 |
C4 |
H5 |
119.7 |
120.1 |
| C7 |
C8 |
H14 |
120.8 |
119.9 |
| C |
C1 |
H3 |
119.5 |
119.9 |
| C4 |
C3 |
H4 |
119.0 |
119.9 |
| O2 |
S |
O1 |
114.7 |
123.2 |
| H1 |
N1 |
H2 |
109.5 |
120.0 |
| H9 |
C16 |
H10 |
109.5 |
109.4 |
| H9 |
C16 |
H11 |
109.4 |
109.5 |
| H10 |
C16 |
H11 |
109.5 |
109.6 |
Torsion Angles for DF5
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C16 |
O3 |
C13 |
C12 |
84.8 |
180.0 |
| C14 |
C13 |
O3 |
C12 |
179.6 |
180.0 |
| O3 |
C13 |
C14 |
H8 |
0.0 |
359.9 |
| O3 |
C13 |
C12 |
C11 |
179.5 |
180.1 |
| O3 |
C13 |
C12 |
H12 |
359.5 |
0.0 |
| O3 |
C13 |
C14 |
C12 |
180.4 |
180.0 |
| C13 |
C14 |
C15 |
H7 |
180.5 |
180.0 |
| C14 |
C13 |
C12 |
C11 |
359.9 |
0.1 |
| C14 |
C13 |
C12 |
H12 |
179.9 |
180.0 |
| C14 |
C15 |
C10 |
C11 |
0.0 |
360.0 |
| C12 |
C13 |
C14 |
H8 |
179.6 |
180.0 |
| C10 |
C11 |
C12 |
C13 |
0.6 |
359.9 |
| C13 |
C12 |
C11 |
C9 |
178.8 |
180.0 |
| C11 |
C12 |
C13 |
H12 |
180.0 |
180.1 |
| C15 |
C10 |
C11 |
C12 |
359.4 |
0.1 |
| C15 |
C10 |
C11 |
C9 |
181.3 |
180.0 |
| C15 |
C10 |
N |
C7 |
160.1 |
180.2 |
| C13 |
C12 |
C11 |
H12 |
180.0 |
179.9 |
| C10 |
C11 |
C12 |
C9 |
181.8 |
179.9 |
| C12 |
C11 |
C9 |
C8 |
193.4 |
180.0 |
| C12 |
C11 |
C9 |
H13 |
13.4 |
359.9 |
| C13 |
C12 |
C11 |
C10 |
0.6 |
359.9 |
| C12 |
C11 |
C10 |
C9 |
178.2 |
180.1 |
| C10 |
C11 |
C12 |
H12 |
180.6 |
180.0 |
| C11 |
C10 |
N |
C7 |
340.5 |
0.3 |
| C10 |
C11 |
C9 |
C8 |
11.6 |
0.1 |
| C10 |
C11 |
C9 |
H13 |
191.6 |
180.0 |
| C10 |
N |
C7 |
C8 |
24.7 |
359.5 |
| C10 |
N |
C7 |
H15 |
204.7 |
179.6 |
| C10 |
C11 |
C9 |
C12 |
178.2 |
180.1 |
| C9 |
C11 |
C12 |
H12 |
358.8 |
0.1 |
| C8 |
C9 |
C11 |
H13 |
180.0 |
180.1 |
| C11 |
C9 |
C8 |
H14 |
174.2 |
180.0 |
| N |
C7 |
C8 |
H14 |
168.2 |
180.3 |
| C6 |
C5 |
C |
H6 |
358.7 |
0.2 |
| C6 |
C5 |
C4 |
H5 |
0.7 |
360.0 |
| C11 |
C9 |
C8 |
H13 |
180.0 |
179.9 |
| N |
C7 |
C8 |
C9 |
348.2 |
0.5 |
| C7 |
C8 |
C9 |
H14 |
180.0 |
179.7 |
| C |
C5 |
C4 |
H5 |
180.3 |
180.2 |
| C5 |
C |
C1 |
H3 |
181.7 |
180.0 |
| C5 |
C4 |
C3 |
H4 |
179.2 |
180.0 |
| N |
C7 |
C8 |
H15 |
180.0 |
180.2 |
| C7 |
C8 |
C9 |
H13 |
174.2 |
179.8 |
| C9 |
C8 |
C7 |
H14 |
180.0 |
180.3 |
| H5 |
C4 |
C3 |
H4 |
359.2 |
0.0 |
| H6 |
C |
C1 |
H3 |
1.8 |
359.8 |
| H7 |
C15 |
C10 |
C11 |
180.0 |
180.0 |
| H8 |
C14 |
C13 |
C12 |
179.6 |
180.0 |
| H8 |
C14 |
C15 |
H7 |
0.5 |
360.0 |
| H10 |
C16 |
H9 |
H11 |
120.0 |
120.1 |
| H9 |
C16 |
H10 |
H11 |
240.0 |
240.0 |
| H9 |
C16 |
H11 |
H10 |
120.0 |
120.0 |
| C13 |
C12 |
H12 |
C11 |
180.0 |
180.1 |
| H12 |
C12 |
C11 |
C9 |
358.8 |
0.1 |
| C11 |
C9 |
H13 |
C8 |
180.0 |
180.1 |
| H13 |
C9 |
C8 |
H14 |
354.2 |
0.1 |
| H14 |
C8 |
C9 |
H13 |
354.2 |
0.1 |
| N |
C7 |
H15 |
C8 |
180.0 |
179.8 |
| H15 |
C7 |
C8 |
H14 |
348.2 |
0.1 |