PDB Chemical Component DEG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DEG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C3' C4' 1.514 1.529
C3' C2' 1.522 1.531
C3' H3'1 1.115 1.090
C3' H3'2 1.115 1.089
C4' H4'1 1.116 1.090
C4' H4'2 1.115 1.090
C4' H4'3 1.115 1.090
C1' C2' 1.519 1.530
C1' O1 1.455 1.429
C1' H1'1 1.115 1.090
C1' H1'2 1.115 1.089
C2' H2'1 1.115 1.089
C2' H2'2 1.115 1.090
C2 O2 1.418 1.429
C2 C3 1.585 1.530
C2 C1 1.590 1.531
C2 H2 1.115 1.090
O2 HO2 0.950 0.967
C3 O3 1.431 1.429
C3 C4 1.539 1.532
C3 H3 1.115 1.090
O3 HO3 0.950 0.967
C4 O4 1.448 1.429
C4 C5 1.568 1.530
C4 H4 1.115 1.089
O4 HO4 0.950 0.967
C5 O5 1.495 1.427
C5 C6 1.525 1.530
C5 H5 1.115 1.089
O5 C1 1.505 1.425
C6 O6 1.412 1.428
C6 H61 1.115 1.089
C6 H62 1.115 1.090
O6 HO6 0.950 0.967
O1 C1 1.440 1.427
C1 H1 1.115 1.090

Bond Angles for DEG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C4' C3' C2' 127.0 109.5
C4' C3' H3'1 106.1 109.5
C4' C3' H3'2 106.1 109.5
C3' C4' H4'1 127.0 109.5
C3' C4' H4'2 106.1 109.5
C3' C4' H4'3 106.1 109.5
C2' C3' H3'1 106.1 109.4
C2' C3' H3'2 106.0 109.5
C3' C2' C1' 121.8 109.5
C3' C2' H2'1 107.9 109.4
C3' C2' H2'2 107.8 109.4
H3'1 C3' H3'2 103.4 109.4
H4'1 C4' H4'2 106.1 109.5
H4'1 C4' H4'3 106.1 109.5
H4'2 C4' H4'3 103.4 109.4
C2' C1' O1 109.0 109.5
C2' C1' H1'1 112.4 109.5
C2' C1' H1'2 112.4 109.4
C1' C2' H2'1 107.8 109.5
C1' C2' H2'2 107.8 109.5
O1 C1' H1'1 112.4 109.4
O1 C1' H1'2 112.4 109.5
C1' O1 C1 116.5 106.8
H1'1 C1' H1'2 98.0 109.5
H2'1 C2' H2'2 102.0 109.5
O2 C2 C3 108.1 109.5
O2 C2 C1 109.2 109.6
O2 C2 H2 110.3 109.5
C2 O2 HO2 109.2 106.8
C3 C2 C1 108.6 109.1
C3 C2 H2 110.3 109.6
C2 C3 O3 109.2 109.7
C2 C3 C4 109.9 108.6
C2 C3 H3 109.6 109.6
C1 C2 H2 110.3 109.5
C2 C1 O5 108.6 109.7
C2 C1 O1 109.0 109.4
C2 C1 H1 109.8 109.3
O3 C3 C4 109.0 109.6
O3 C3 H3 109.6 109.6
C3 O3 HO3 109.2 106.8
C4 C3 H3 109.6 109.6
C3 C4 O4 110.3 109.6
C3 C4 C5 109.1 109.0
C3 C4 H4 109.5 109.6
O4 C4 C5 108.9 109.5
O4 C4 H4 109.5 109.5
C4 O4 HO4 110.3 106.8
C5 C4 H4 109.5 109.6
C4 C5 O5 109.4 109.7
C4 C5 C6 111.5 109.4
C4 C5 H5 109.0 109.5
O5 C5 C6 109.0 109.4
O5 C5 H5 109.0 109.4
C5 O5 C1 114.9 107.6
C6 C5 H5 109.0 109.4
C5 C6 O6 111.6 109.5
C5 C6 H61 111.4 109.5
C5 C6 H62 111.4 109.4
O5 C1 O1 109.8 109.5
O5 C1 H1 109.8 109.4
O6 C6 H61 111.4 109.5
O6 C6 H62 111.4 109.4
C6 O6 HO6 111.6 106.8
H61 C6 H62 99.0 109.5
O1 C1 H1 109.8 109.5

Torsion Angles for DEG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2' C3' C4' H3'1 125.3 240.0
C2' C3' C4' H3'2 234.8 120.0
C4' C3' C2' C1' 180.1 180.0
C4' C3' C2' H2'1 54.8 300.0
C4' C3' C2' H2'2 305.3 60.0
H3'1 C3' C4' H3'2 109.5 240.0
H4'1 C4' C3' H4'2 125.3 240.0
H4'1 C4' C3' H4'3 234.8 120.0
H4'2 C4' C3' H4'3 109.5 240.0
C4' C3' C2' H3'1 234.7 120.0
C4' C3' C2' H3'2 125.3 239.9
C2' C3' C4' H4'1 180.0 180.0
C2' C3' C4' H4'2 54.8 300.0
C2' C3' C4' H4'3 305.3 60.0
H3'1 C3' C2' H3'2 250.5 119.9
C3' C2' C1' O1 180.1 180.0
C3' C2' C1' H1'1 54.8 300.0
C3' C2' C1' H1'2 305.3 60.0
C1' C2' C3' H2'1 125.3 240.0
C1' C2' C3' H2'2 234.7 120.0
H2'1 C2' C3' H2'2 109.5 240.0
C4' C3' H3'1 C2' 137.2 240.0
C4' C3' H3'1 H3'2 248.6 120.0
H3'1 C3' C4' H4'1 54.8 300.0
H3'1 C3' C4' H4'2 289.5 60.0
H3'1 C3' C4' H4'3 180.0 180.0
C2' C3' H3'1 H3'2 111.4 240.1
H3'1 C3' C2' C1' 305.3 60.0
H3'1 C3' C2' H2'1 180.0 180.0
H3'1 C3' C2' H2'2 70.6 300.0
C4' C3' H3'2 C2' 222.8 120.1
C4' C3' H3'2 H3'1 111.4 240.0
H3'2 C3' C4' H4'1 305.3 60.0
H3'2 C3' C4' H4'2 180.0 180.0
H3'2 C3' C4' H4'3 70.5 299.9
C2' C3' H3'2 H3'1 248.6 119.9
H3'2 C3' C2' C1' 54.8 300.1
H3'2 C3' C2' H2'1 289.5 60.0
H3'2 C3' C2' H2'2 180.1 180.1
H4'1 C4' C3' C2' 180.0 180.0
H4'1 C4' C3' H3'1 54.8 300.0
H4'1 C4' C3' H3'2 305.3 60.0
C3' C4' H4'1 H4'2 234.7 120.0
C3' C4' H4'1 H4'3 125.3 240.0
H4'2 C4' H4'1 H4'3 250.5 119.9
H4'2 C4' C3' C2' 54.8 300.0
H4'2 C4' C3' H3'1 289.5 60.0
H4'2 C4' C3' H3'2 180.0 180.0
C3' C4' H4'2 H4'1 137.2 240.0
C3' C4' H4'2 H4'3 248.6 120.0
H4'1 C4' H4'2 H4'3 111.4 240.0
H4'3 C4' C3' C2' 305.3 60.0
H4'3 C4' C3' H3'1 180.0 180.0
H4'3 C4' C3' H3'2 70.5 299.9
C3' C4' H4'3 H4'1 222.8 120.0
C3' C4' H4'3 H4'2 111.4 240.0
H4'1 C4' H4'3 H4'2 248.6 120.0
C1' C2' C3' H3'1 305.3 60.0
C1' C2' C3' H3'2 54.8 300.1
C3' C2' C1' H2'1 234.7 119.9
C3' C2' C1' H2'2 125.3 240.0
O1 C1' C2' H1'1 125.2 240.0
O1 C1' C2' H1'2 234.7 120.0
C2' C1' O1 C1 192.8 180.0
H1'1 C1' C2' H1'2 109.5 240.0
H2'1 C2' C1' H2'2 250.6 120.1
C2' C1' O1 H1'1 234.8 120.0
C2' C1' O1 H1'2 125.3 240.0
O1 C1' C2' H2'1 305.4 60.1
O1 C1' C2' H2'2 54.8 300.0
H1'1 C1' O1 H1'2 250.5 120.0
C2 C1 O1 C1' 180.7 180.1
O5 C1 O1 C1' 61.8 59.8
C1' O1 C1 H1 301.0 299.9
C2' C1' H1'1 O1 123.4 240.0
C2' C1' H1'1 H1'2 241.7 120.0
H1'1 C1' C2' H2'1 180.1 180.0
H1'1 C1' C2' H2'2 289.5 59.9
O1 C1' H1'1 H1'2 118.3 240.0
H1'1 C1' O1 C1 318.0 60.0
C2' C1' H1'2 O1 236.6 120.0
C2' C1' H1'2 H1'1 118.3 240.0
H1'2 C1' C2' H2'1 70.6 300.0
H1'2 C1' C2' H2'2 180.1 180.0
O1 C1' H1'2 H1'1 241.7 120.0
H1'2 C1' O1 C1 67.5 300.0
H2'1 C2' C3' H3'1 180.0 180.0
H2'1 C2' C3' H3'2 289.5 60.0
C3' C2' H2'1 C1' 133.2 240.0
C3' C2' H2'1 H2'2 246.6 120.0
H2'1 C2' C1' O1 305.4 60.1
H2'1 C2' C1' H1'1 180.1 180.0
H2'1 C2' C1' H1'2 70.6 300.0
C1' C2' H2'1 H2'2 113.4 240.0
H2'2 C2' C3' H3'1 70.6 300.0
H2'2 C2' C3' H3'2 180.1 180.1
C3' C2' H2'2 C1' 226.8 120.0
C3' C2' H2'2 H2'1 113.4 240.0
H2'2 C2' C1' O1 54.8 300.0
H2'2 C2' C1' H1'1 289.5 59.9
H2'2 C2' C1' H1'2 180.1 180.0
C1' C2' H2'2 H2'1 246.6 120.0
C3 C2 O2 C1 242.0 240.4
C3 C2 O2 H2 120.6 120.3
O2 C2 C3 O3 299.5 306.4
O2 C2 C3 C4 59.0 66.2
O2 C2 C3 H3 179.5 185.9
C1 C2 O2 H2 238.6 239.9
O2 C2 C1 O5 298.3 301.4
O2 C2 C1 O1 178.7 181.2
O2 C2 C1 H1 58.4 61.4
O2 C2 C3 C1 118.4 119.9
O2 C2 C3 H2 239.4 239.8
C3 C2 O2 HO2 62.0 180.0
C1 C2 C3 H2 121.0 119.9
C3 C2 C1 O5 56.0 61.3
C3 C2 C1 O1 296.4 301.1
C3 C2 C1 H1 176.1 181.3
O3 C3 C2 C4 240.5 240.2
O3 C3 C2 H3 120.0 120.5
C2 C3 O3 HO3 180.0 299.2
C4 C3 C2 H3 239.5 240.3
C2 C3 C4 O4 179.7 173.6
C2 C3 C4 C5 60.2 53.8
C2 C3 C4 H4 300.3 293.8
C1' O1 C1 C2 180.7 180.1
O2 C2 C1 C3 242.3 240.1
O2 C2 C1 H2 121.3 120.1
C1 C2 O2 HO2 180.0 299.7
C3 C2 C1 H2 239.0 240.1
C1 C2 C3 O3 181.1 186.5
C1 C2 C3 C4 300.6 306.3
C1 C2 C3 H3 61.1 66.0
C5 O5 C1 C2 301.9 292.4
O5 C1 C2 O1 119.6 120.1
O5 C1 C2 H1 239.9 240.0
O1 C1 C2 H1 120.3 119.9
O2 C2 H2 C3 119.3 120.2
O2 C2 H2 C1 239.3 239.8
H2 C2 O2 HO2 301.4 59.8
C3 C2 H2 C1 120.0 119.6
H2 C2 C3 O3 60.1 66.6
H2 C2 C3 C4 179.6 186.4
H2 C2 C3 H3 300.1 306.1
H2 C2 C1 O5 177.0 181.2
H2 C2 C1 O1 57.4 61.1
H2 C2 C1 H1 297.1 301.2
HO2 O2 C2 C3 62.0 180.0
HO2 O2 C2 C1 180.0 299.7
HO2 O2 C2 H2 301.4 59.8
O3 C3 C2 C1 181.1 186.5
O3 C3 C2 H2 60.1 66.6
C2 C3 O3 C4 120.0 119.2
C2 C3 O3 H3 240.0 239.6
C4 C3 O3 H3 119.9 120.3
O3 C3 C4 O4 299.4 293.5
O3 C3 C4 C5 179.8 173.7
O3 C3 C4 H4 59.9 53.7
C4 C3 C2 C1 300.6 306.3
C4 C3 C2 H2 179.6 186.4
C2 C3 C4 O3 240.4 240.1
C2 C3 C4 H3 120.5 119.8
O3 C3 C4 H3 240.1 239.7
C4 C3 O3 HO3 60.0 180.0
O4 C4 C3 C5 119.6 119.9
O4 C4 C3 H4 239.4 239.8
C3 C4 O4 HO4 180.0 60.4
C5 C4 C3 H4 119.9 120.0
C3 C4 C5 O5 301.8 298.7
C3 C4 C5 C6 181.3 178.7
C3 C4 C5 H5 60.9 58.8
H3 C3 C2 C1 61.1 66.0
H3 C3 C2 H2 300.1 306.1
C2 C3 H3 O3 119.8 120.5
C2 C3 H3 C4 239.4 240.8
O3 C3 H3 C4 119.6 120.3
H3 C3 O3 HO3 300.0 59.6
H3 C3 C4 O4 59.3 53.9
H3 C3 C4 C5 299.7 294.0
H3 C3 C4 H4 179.8 174.1
HO3 O3 C3 C4 60.0 180.0
HO3 O3 C3 H3 300.0 59.6
O4 C4 C3 H3 59.3 53.9
C3 C4 O4 C5 240.3 240.4
C3 C4 O4 H4 120.6 120.2
C5 C4 O4 H4 240.3 239.8
O4 C4 C5 O5 181.4 178.8
O4 C4 C5 C6 60.8 58.7
O4 C4 C5 H5 300.4 298.8
C5 C4 C3 H3 299.7 294.0
C3 C4 C5 O4 120.4 119.9
C3 C4 C5 H4 240.1 240.1
O4 C4 C5 H4 119.7 120.1
C5 C4 O4 HO4 299.7 180.0
O5 C5 C4 C6 120.6 120.0
O5 C5 C4 H5 241.0 239.9
C4 C5 O5 C1 59.0 67.6
C6 C5 C4 H5 120.4 119.9
C4 C5 C6 O6 61.9 180.2
C4 C5 C6 H61 296.6 300.2
C4 C5 C6 H62 187.2 60.3
H4 C4 C3 H3 179.8 174.1
C3 C4 H4 O4 239.0 239.7
C3 C4 H4 C5 119.6 119.6
O4 C4 H4 C5 240.7 239.9
H4 C4 O4 HO4 59.4 300.2
H4 C4 C5 O5 61.7 58.6
H4 C4 C5 C6 301.1 298.6
H4 C4 C5 H5 180.7 178.7
HO4 O4 C4 C5 299.7 180.0
HO4 O4 C4 H4 59.4 300.2
C2 C1 O5 C5 301.9 292.4
O5 C5 C4 H4 61.7 58.6
C4 C5 O5 C6 237.9 240.0
C4 C5 O5 H5 119.0 120.1
C6 C5 O5 H5 241.2 240.1
O5 C5 C6 O6 301.1 59.9
O5 C5 C6 H61 175.8 180.0
O5 C5 C6 H62 66.4 300.0
C5 O5 C1 O1 61.0 52.5
C5 O5 C1 H1 181.8 172.5
C6 C5 C4 H4 301.1 298.6
C4 C5 C6 O5 120.8 120.3
C4 C5 C6 H5 239.6 240.1
O5 C5 C6 H5 118.8 119.8
C6 C5 O5 C1 181.1 187.7
O6 C6 C5 H61 125.3 239.9
O6 C6 C5 H62 234.7 119.9
C5 C6 O6 HO6 180.0 180.0
H61 C6 C5 H62 109.5 240.0
H5 C5 C4 H4 180.7 178.7
C4 C5 H5 O5 240.7 239.7
C4 C5 H5 C6 121.9 119.9
O5 C5 H5 C6 241.2 240.1
H5 C5 O5 C1 299.9 307.5
H5 C5 C6 O6 182.3 300.1
H5 C5 C6 H61 57.0 60.2
H5 C5 C6 H62 307.6 180.2
C1' O1 C1 O5 61.8 59.8
O5 C1 C2 H2 177.0 181.2
C2 C1 O5 O1 240.9 239.9
C2 C1 O5 H1 120.1 120.0
C1 O5 C5 C6 181.1 187.7
C1 O5 C5 H5 299.9 307.5
O1 C1 O5 H1 239.2 240.0
O6 C6 C5 H5 182.3 300.1
C5 C6 O6 H61 234.8 120.0
C5 C6 O6 H62 125.3 240.1
H61 C6 O6 H62 250.5 120.0
H61 C6 C5 H5 57.0 60.2
C5 C6 H61 O6 125.4 240.0
C5 C6 H61 H62 242.7 120.0
O6 C6 H61 H62 117.3 240.0
H61 C6 O6 HO6 305.2 59.9
H62 C6 C5 H5 307.6 180.2
C5 C6 H62 O6 234.6 120.0
C5 C6 H62 H61 117.3 240.0
O6 C6 H62 H61 242.7 120.0
H62 C6 O6 HO6 54.7 299.9
HO6 O6 C6 H61 305.2 59.9
HO6 O6 C6 H62 54.7 299.9
C1 O1 C1' H1'1 318.0 60.0
C1 O1 C1' H1'2 67.5 300.0
O1 C1 C2 H2 57.4 61.1
C2 C1 O1 O5 118.9 120.3
C2 C1 O1 H1 239.7 240.2
O5 C1 O1 H1 120.8 119.9
H1 C1 C2 H2 297.1 301.2
C2 C1 H1 O5 240.6 239.8
C2 C1 H1 O1 119.8 119.8
O5 C1 H1 O1 239.2 240.0