PDB Chemical Component DEC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DEC
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
O1 |
1.267 |
1.208 |
C1 |
O2 |
1.379 |
1.341 |
C1 |
C2 |
1.511 |
1.507 |
O2 |
HO2 |
0.949 |
0.967 |
C2 |
C3 |
1.509 |
1.529 |
C2 |
H21 |
1.115 |
1.090 |
C2 |
H22 |
1.116 |
1.090 |
C3 |
C4 |
1.526 |
1.530 |
C3 |
H31 |
1.114 |
1.090 |
C3 |
H32 |
1.115 |
1.090 |
C4 |
C5 |
1.545 |
1.530 |
C4 |
H41 |
1.114 |
1.090 |
C4 |
H42 |
1.115 |
1.090 |
C5 |
C6 |
1.541 |
1.528 |
C5 |
H51 |
1.116 |
1.090 |
C5 |
H52 |
1.115 |
1.090 |
C6 |
C7 |
1.537 |
1.530 |
C6 |
H61 |
1.115 |
1.090 |
C6 |
H62 |
1.114 |
1.090 |
C7 |
C8 |
1.547 |
1.530 |
C7 |
H71 |
1.116 |
1.090 |
C7 |
H72 |
1.115 |
1.090 |
C8 |
C9 |
1.499 |
1.529 |
C8 |
H81 |
1.115 |
1.090 |
C8 |
H82 |
1.115 |
1.090 |
C9 |
C10 |
1.507 |
1.507 |
C9 |
H91 |
1.115 |
1.090 |
C9 |
H92 |
1.115 |
1.090 |
C10 |
O3 |
1.292 |
1.208 |
C10 |
O4 |
1.340 |
1.341 |
O4 |
HO4 |
0.951 |
0.967 |
Bond Angles for DEC
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
O2 |
118.7 |
120.0 |
O1 |
C1 |
C2 |
115.7 |
119.9 |
O2 |
C1 |
C2 |
125.5 |
120.1 |
C1 |
O2 |
HO2 |
118.7 |
120.0 |
C1 |
C2 |
C3 |
123.6 |
109.5 |
C1 |
C2 |
H21 |
107.2 |
109.4 |
C1 |
C2 |
H22 |
107.2 |
109.4 |
C3 |
C2 |
H21 |
107.2 |
109.5 |
C3 |
C2 |
H22 |
107.2 |
109.5 |
C2 |
C3 |
C4 |
115.6 |
109.5 |
C2 |
C3 |
H31 |
110.0 |
109.5 |
C2 |
C3 |
H32 |
109.9 |
109.5 |
H21 |
C2 |
H22 |
102.5 |
109.5 |
C4 |
C3 |
H31 |
110.0 |
109.5 |
C4 |
C3 |
H32 |
110.0 |
109.5 |
C3 |
C4 |
C5 |
114.8 |
109.5 |
C3 |
C4 |
H41 |
110.3 |
109.5 |
C3 |
C4 |
H42 |
110.3 |
109.5 |
H31 |
C3 |
H32 |
100.3 |
109.5 |
C5 |
C4 |
H41 |
110.3 |
109.4 |
C5 |
C4 |
H42 |
110.3 |
109.4 |
C4 |
C5 |
C6 |
108.9 |
109.5 |
C4 |
C5 |
H51 |
112.4 |
109.5 |
C4 |
C5 |
H52 |
112.4 |
109.5 |
H41 |
C4 |
H42 |
100.0 |
109.5 |
C6 |
C5 |
H51 |
112.4 |
109.4 |
C6 |
C5 |
H52 |
112.4 |
109.4 |
C5 |
C6 |
C7 |
114.2 |
109.5 |
C5 |
C6 |
H61 |
110.4 |
109.4 |
C5 |
C6 |
H62 |
110.5 |
109.4 |
H51 |
C5 |
H52 |
98.0 |
109.5 |
C7 |
C6 |
H61 |
110.5 |
109.5 |
C7 |
C6 |
H62 |
110.4 |
109.5 |
C6 |
C7 |
C8 |
112.8 |
109.5 |
C6 |
C7 |
H71 |
111.0 |
109.4 |
C6 |
C7 |
H72 |
111.0 |
109.4 |
H61 |
C6 |
H62 |
99.9 |
109.5 |
C8 |
C7 |
H71 |
111.0 |
109.5 |
C8 |
C7 |
H72 |
110.9 |
109.5 |
C7 |
C8 |
C9 |
112.1 |
109.5 |
C7 |
C8 |
H81 |
111.3 |
109.5 |
C7 |
C8 |
H82 |
111.3 |
109.5 |
H71 |
C7 |
H72 |
99.3 |
109.5 |
C9 |
C8 |
H81 |
111.2 |
109.5 |
C9 |
C8 |
H82 |
111.2 |
109.5 |
C8 |
C9 |
C10 |
127.2 |
109.5 |
C8 |
C9 |
H91 |
106.0 |
109.5 |
C8 |
C9 |
H92 |
106.0 |
109.5 |
H81 |
C8 |
H82 |
99.1 |
109.5 |
C10 |
C9 |
H91 |
106.0 |
109.4 |
C10 |
C9 |
H92 |
105.9 |
109.4 |
C9 |
C10 |
O3 |
116.0 |
119.9 |
C9 |
C10 |
O4 |
144.1 |
120.1 |
H91 |
C9 |
H92 |
103.4 |
109.5 |
O3 |
C10 |
O4 |
99.9 |
120.0 |
C10 |
O4 |
HO4 |
144.1 |
120.0 |
Torsion Angles for DEC
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O2 |
C1 |
O1 |
C2 |
178.5 |
180.0 |
O1 |
C1 |
O2 |
HO2 |
180.0 |
-0.0 |
O1 |
C1 |
C2 |
C3 |
188.0 |
360.0 |
O1 |
C1 |
C2 |
H21 |
313.3 |
120.0 |
O1 |
C1 |
C2 |
H22 |
62.7 |
240.0 |
O1 |
C1 |
O2 |
C2 |
181.7 |
180.0 |
O2 |
C1 |
C2 |
C3 |
9.7 |
180.0 |
O2 |
C1 |
C2 |
H21 |
134.9 |
300.0 |
O2 |
C1 |
C2 |
H22 |
244.4 |
60.0 |
O1 |
C1 |
C2 |
O2 |
178.4 |
180.0 |
C2 |
C1 |
O2 |
HO2 |
358.3 |
180.0 |
C3 |
C2 |
C1 |
H21 |
234.7 |
240.0 |
C3 |
C2 |
C1 |
H22 |
125.3 |
120.0 |
C1 |
C2 |
C3 |
C4 |
221.1 |
180.0 |
C1 |
C2 |
C3 |
H31 |
346.3 |
300.0 |
C1 |
C2 |
C3 |
H32 |
95.9 |
60.0 |
H21 |
C2 |
C1 |
H22 |
250.6 |
240.1 |
HO2 |
O2 |
C1 |
C2 |
358.3 |
180.0 |
C1 |
C2 |
C3 |
H21 |
125.3 |
120.0 |
C1 |
C2 |
C3 |
H22 |
234.7 |
240.0 |
H21 |
C2 |
C3 |
H22 |
109.4 |
120.0 |
C4 |
C3 |
C2 |
H31 |
234.8 |
240.0 |
C4 |
C3 |
C2 |
H32 |
125.2 |
120.0 |
C2 |
C3 |
C4 |
C5 |
2.4 |
180.0 |
C2 |
C3 |
C4 |
H41 |
127.7 |
300.0 |
C2 |
C3 |
C4 |
H42 |
237.1 |
60.0 |
H31 |
C3 |
C2 |
H32 |
250.5 |
240.0 |
C1 |
C2 |
H21 |
C3 |
225.4 |
239.9 |
C1 |
C2 |
H21 |
H22 |
112.7 |
119.9 |
C3 |
C2 |
H21 |
H22 |
247.4 |
240.0 |
H21 |
C2 |
C3 |
C4 |
95.8 |
60.0 |
H21 |
C2 |
C3 |
H31 |
221.1 |
180.0 |
H21 |
C2 |
C3 |
H32 |
330.6 |
300.0 |
C1 |
C2 |
H22 |
C3 |
134.7 |
120.1 |
C1 |
C2 |
H22 |
H21 |
247.3 |
240.1 |
C3 |
C2 |
H22 |
H21 |
112.7 |
120.0 |
H22 |
C2 |
C3 |
C4 |
346.4 |
300.0 |
H22 |
C2 |
C3 |
H31 |
111.7 |
60.0 |
H22 |
C2 |
C3 |
H32 |
221.2 |
180.0 |
C4 |
C3 |
C2 |
H21 |
95.8 |
60.0 |
C4 |
C3 |
C2 |
H22 |
346.4 |
300.0 |
C2 |
C3 |
C4 |
H31 |
125.2 |
120.0 |
C2 |
C3 |
C4 |
H32 |
234.8 |
240.0 |
H31 |
C3 |
C4 |
H32 |
109.5 |
120.0 |
C5 |
C4 |
C3 |
H41 |
234.7 |
240.0 |
C5 |
C4 |
C3 |
H42 |
125.3 |
120.0 |
C3 |
C4 |
C5 |
C6 |
86.3 |
180.0 |
C3 |
C4 |
C5 |
H51 |
211.5 |
300.0 |
C3 |
C4 |
C5 |
H52 |
321.0 |
60.0 |
H41 |
C4 |
C3 |
H42 |
250.5 |
240.0 |
H31 |
C3 |
C2 |
H21 |
221.1 |
180.0 |
H31 |
C3 |
C2 |
H22 |
111.7 |
60.0 |
C2 |
C3 |
H31 |
C4 |
231.6 |
240.0 |
C2 |
C3 |
H31 |
H32 |
115.8 |
120.0 |
C4 |
C3 |
H31 |
H32 |
244.2 |
240.0 |
H31 |
C3 |
C4 |
C5 |
237.2 |
60.0 |
H31 |
C3 |
C4 |
H41 |
2.4 |
180.0 |
H31 |
C3 |
C4 |
H42 |
111.9 |
300.0 |
H32 |
C3 |
C2 |
H21 |
330.6 |
300.0 |
H32 |
C3 |
C2 |
H22 |
221.2 |
180.0 |
C2 |
C3 |
H32 |
C4 |
128.4 |
120.0 |
C2 |
C3 |
H32 |
H31 |
244.2 |
240.0 |
C4 |
C3 |
H32 |
H31 |
115.8 |
120.0 |
H32 |
C3 |
C4 |
C5 |
127.6 |
300.0 |
H32 |
C3 |
C4 |
H41 |
252.9 |
60.0 |
H32 |
C3 |
C4 |
H42 |
2.4 |
180.0 |
C5 |
C4 |
C3 |
H31 |
237.2 |
60.0 |
C5 |
C4 |
C3 |
H32 |
127.6 |
300.0 |
C3 |
C4 |
C5 |
H41 |
125.3 |
120.0 |
C3 |
C4 |
C5 |
H42 |
234.7 |
240.0 |
H41 |
C4 |
C5 |
H42 |
109.5 |
119.9 |
C6 |
C5 |
C4 |
H51 |
234.7 |
240.0 |
C6 |
C5 |
C4 |
H52 |
125.3 |
120.0 |
C4 |
C5 |
C6 |
C7 |
181.5 |
180.0 |
C4 |
C5 |
C6 |
H61 |
306.8 |
300.0 |
C4 |
C5 |
C6 |
H62 |
56.3 |
60.0 |
H51 |
C5 |
C4 |
H52 |
250.5 |
240.0 |
H41 |
C4 |
C3 |
H31 |
2.4 |
180.0 |
H41 |
C4 |
C3 |
H32 |
252.9 |
60.0 |
C3 |
C4 |
H41 |
C5 |
232.2 |
239.9 |
C3 |
C4 |
H41 |
H42 |
116.1 |
120.0 |
C5 |
C4 |
H41 |
H42 |
243.9 |
240.1 |
H41 |
C4 |
C5 |
C6 |
321.0 |
60.0 |
H41 |
C4 |
C5 |
H51 |
86.3 |
180.0 |
H41 |
C4 |
C5 |
H52 |
195.7 |
299.9 |
H42 |
C4 |
C3 |
H31 |
111.9 |
300.0 |
H42 |
C4 |
C3 |
H32 |
2.4 |
180.0 |
C3 |
C4 |
H42 |
C5 |
127.8 |
120.1 |
C3 |
C4 |
H42 |
H41 |
243.9 |
240.0 |
C5 |
C4 |
H42 |
H41 |
116.1 |
119.9 |
H42 |
C4 |
C5 |
C6 |
211.5 |
300.0 |
H42 |
C4 |
C5 |
H51 |
336.8 |
60.1 |
H42 |
C4 |
C5 |
H52 |
86.3 |
180.0 |
C6 |
C5 |
C4 |
H41 |
321.0 |
60.0 |
C6 |
C5 |
C4 |
H42 |
211.5 |
300.0 |
C4 |
C5 |
C6 |
H51 |
125.3 |
120.0 |
C4 |
C5 |
C6 |
H52 |
234.7 |
240.0 |
H51 |
C5 |
C6 |
H52 |
109.4 |
120.0 |
C7 |
C6 |
C5 |
H61 |
234.8 |
240.0 |
C7 |
C6 |
C5 |
H62 |
125.2 |
120.0 |
C5 |
C6 |
C7 |
C8 |
312.9 |
180.0 |
C5 |
C6 |
C7 |
H71 |
78.2 |
300.0 |
C5 |
C6 |
C7 |
H72 |
187.7 |
60.0 |
H61 |
C6 |
C5 |
H62 |
250.5 |
240.0 |
H51 |
C5 |
C4 |
H41 |
86.3 |
180.0 |
H51 |
C5 |
C4 |
H42 |
336.8 |
60.1 |
C4 |
C5 |
H51 |
C6 |
236.7 |
239.9 |
C4 |
C5 |
H51 |
H52 |
118.4 |
120.0 |
C6 |
C5 |
H51 |
H52 |
241.7 |
240.0 |
H51 |
C5 |
C6 |
C7 |
56.2 |
60.0 |
H51 |
C5 |
C6 |
H61 |
181.5 |
180.0 |
H51 |
C5 |
C6 |
H62 |
291.0 |
300.0 |
H52 |
C5 |
C4 |
H41 |
195.7 |
299.9 |
H52 |
C5 |
C4 |
H42 |
86.3 |
180.0 |
C4 |
C5 |
H52 |
C6 |
123.3 |
120.1 |
C4 |
C5 |
H52 |
H51 |
241.6 |
240.0 |
C6 |
C5 |
H52 |
H51 |
118.3 |
120.0 |
H52 |
C5 |
C6 |
C7 |
306.8 |
300.0 |
H52 |
C5 |
C6 |
H61 |
72.0 |
60.0 |
H52 |
C5 |
C6 |
H62 |
181.6 |
180.0 |
C7 |
C6 |
C5 |
H51 |
56.2 |
60.0 |
C7 |
C6 |
C5 |
H52 |
306.8 |
300.0 |
C5 |
C6 |
C7 |
H61 |
125.2 |
120.0 |
C5 |
C6 |
C7 |
H62 |
234.8 |
240.0 |
H61 |
C6 |
C7 |
H62 |
109.6 |
120.0 |
C8 |
C7 |
C6 |
H71 |
234.7 |
240.0 |
C8 |
C7 |
C6 |
H72 |
125.2 |
120.0 |
C6 |
C7 |
C8 |
C9 |
103.5 |
180.0 |
C6 |
C7 |
C8 |
H81 |
228.8 |
300.0 |
C6 |
C7 |
C8 |
H82 |
338.3 |
60.0 |
H71 |
C7 |
C6 |
H72 |
250.5 |
240.1 |
H61 |
C6 |
C5 |
H51 |
181.5 |
180.0 |
H61 |
C6 |
C5 |
H52 |
72.0 |
60.0 |
C5 |
C6 |
H61 |
C7 |
232.7 |
239.9 |
C5 |
C6 |
H61 |
H62 |
116.3 |
120.0 |
C7 |
C6 |
H61 |
H62 |
243.7 |
240.0 |
H61 |
C6 |
C7 |
C8 |
187.7 |
60.0 |
H61 |
C6 |
C7 |
H71 |
313.0 |
180.0 |
H61 |
C6 |
C7 |
H72 |
62.5 |
299.9 |
H62 |
C6 |
C5 |
H51 |
291.0 |
300.0 |
H62 |
C6 |
C5 |
H52 |
181.6 |
180.0 |
C5 |
C6 |
H62 |
C7 |
127.3 |
120.1 |
C5 |
C6 |
H62 |
H61 |
243.7 |
240.0 |
C7 |
C6 |
H62 |
H61 |
116.3 |
120.0 |
H62 |
C6 |
C7 |
C8 |
78.2 |
300.0 |
H62 |
C6 |
C7 |
H71 |
203.4 |
60.1 |
H62 |
C6 |
C7 |
H72 |
312.9 |
180.0 |
C8 |
C7 |
C6 |
H61 |
187.7 |
60.0 |
C8 |
C7 |
C6 |
H62 |
78.2 |
300.0 |
C6 |
C7 |
C8 |
H71 |
125.3 |
120.0 |
C6 |
C7 |
C8 |
H72 |
234.7 |
240.0 |
H71 |
C7 |
C8 |
H72 |
109.4 |
120.0 |
C9 |
C8 |
C7 |
H81 |
234.8 |
240.0 |
C9 |
C8 |
C7 |
H82 |
125.2 |
120.0 |
C7 |
C8 |
C9 |
C10 |
166.5 |
180.0 |
C7 |
C8 |
C9 |
H91 |
291.8 |
300.0 |
C7 |
C8 |
C9 |
H92 |
41.2 |
60.0 |
H81 |
C8 |
C7 |
H82 |
250.5 |
240.0 |
H71 |
C7 |
C6 |
H61 |
313.0 |
180.0 |
H71 |
C7 |
C6 |
H62 |
203.4 |
60.1 |
C6 |
C7 |
H71 |
C8 |
233.7 |
239.9 |
C6 |
C7 |
H71 |
H72 |
116.9 |
119.9 |
C8 |
C7 |
H71 |
H72 |
243.2 |
240.0 |
H71 |
C7 |
C8 |
C9 |
338.3 |
60.0 |
H71 |
C7 |
C8 |
H81 |
103.5 |
180.0 |
H71 |
C7 |
C8 |
H82 |
213.0 |
300.0 |
H72 |
C7 |
C6 |
H61 |
62.5 |
299.9 |
H72 |
C7 |
C6 |
H62 |
312.9 |
180.0 |
C6 |
C7 |
H72 |
C8 |
126.3 |
120.1 |
C6 |
C7 |
H72 |
H71 |
243.1 |
240.1 |
C8 |
C7 |
H72 |
H71 |
116.8 |
120.0 |
H72 |
C7 |
C8 |
C9 |
228.8 |
300.0 |
H72 |
C7 |
C8 |
H81 |
354.1 |
60.0 |
H72 |
C7 |
C8 |
H82 |
103.6 |
180.0 |
C9 |
C8 |
C7 |
H71 |
338.3 |
60.0 |
C9 |
C8 |
C7 |
H72 |
228.8 |
300.0 |
C7 |
C8 |
C9 |
H81 |
125.3 |
120.0 |
C7 |
C8 |
C9 |
H82 |
234.7 |
240.0 |
H81 |
C8 |
C9 |
H82 |
109.4 |
120.0 |
C10 |
C9 |
C8 |
H91 |
234.7 |
240.0 |
C10 |
C9 |
C8 |
H92 |
125.2 |
120.0 |
C8 |
C9 |
C10 |
O3 |
195.4 |
360.0 |
C8 |
C9 |
C10 |
O4 |
18.4 |
180.0 |
H91 |
C9 |
C8 |
H92 |
250.5 |
240.0 |
H81 |
C8 |
C7 |
H71 |
103.5 |
180.0 |
H81 |
C8 |
C7 |
H72 |
354.1 |
60.0 |
C7 |
C8 |
H81 |
C9 |
234.3 |
240.0 |
C7 |
C8 |
H81 |
H82 |
117.2 |
120.0 |
C9 |
C8 |
H81 |
H82 |
243.0 |
240.0 |
H81 |
C8 |
C9 |
C10 |
41.2 |
60.0 |
H81 |
C8 |
C9 |
H91 |
166.5 |
180.0 |
H81 |
C8 |
C9 |
H92 |
275.9 |
300.0 |
H82 |
C8 |
C7 |
H71 |
213.0 |
300.0 |
H82 |
C8 |
C7 |
H72 |
103.6 |
180.0 |
C7 |
C8 |
H82 |
C9 |
125.7 |
120.0 |
C7 |
C8 |
H82 |
H81 |
242.8 |
240.0 |
C9 |
C8 |
H82 |
H81 |
117.1 |
120.0 |
H82 |
C8 |
C9 |
C10 |
291.8 |
300.0 |
H82 |
C8 |
C9 |
H91 |
57.1 |
60.0 |
H82 |
C8 |
C9 |
H92 |
166.5 |
180.0 |
C10 |
C9 |
C8 |
H81 |
41.2 |
60.0 |
C10 |
C9 |
C8 |
H82 |
291.8 |
300.0 |
C8 |
C9 |
C10 |
H91 |
125.3 |
120.0 |
C8 |
C9 |
C10 |
H92 |
234.7 |
240.0 |
H91 |
C9 |
C10 |
H92 |
109.4 |
119.9 |
O3 |
C10 |
C9 |
O4 |
177.0 |
180.0 |
C9 |
C10 |
O4 |
HO4 |
180.0 |
180.0 |
H91 |
C9 |
C8 |
H81 |
166.5 |
180.0 |
H91 |
C9 |
C8 |
H82 |
57.1 |
60.0 |
C8 |
C9 |
H91 |
C10 |
222.5 |
239.9 |
C8 |
C9 |
H91 |
H92 |
111.3 |
120.0 |
C10 |
C9 |
H91 |
H92 |
248.8 |
240.1 |
H91 |
C9 |
C10 |
O3 |
70.1 |
240.0 |
H91 |
C9 |
C10 |
O4 |
253.1 |
60.0 |
H92 |
C9 |
C8 |
H81 |
275.9 |
300.0 |
H92 |
C9 |
C8 |
H82 |
166.5 |
180.0 |
C8 |
C9 |
H92 |
C10 |
137.5 |
120.1 |
C8 |
C9 |
H92 |
H91 |
248.7 |
240.0 |
C10 |
C9 |
H92 |
H91 |
111.2 |
119.9 |
H92 |
C9 |
C10 |
O3 |
320.6 |
120.0 |
H92 |
C9 |
C10 |
O4 |
143.6 |
300.0 |
O3 |
C10 |
C9 |
H91 |
70.1 |
240.0 |
O3 |
C10 |
C9 |
H92 |
320.6 |
120.0 |
C9 |
C10 |
O3 |
O4 |
181.8 |
180.0 |
O3 |
C10 |
O4 |
HO4 |
2.7 |
-0.0 |
O4 |
C10 |
C9 |
H91 |
253.1 |
60.0 |
O4 |
C10 |
C9 |
H92 |
143.6 |
300.0 |
C9 |
C10 |
O4 |
O3 |
177.3 |
180.0 |