PDB Chemical Component DEA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DEA
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N9 |
C8 |
1.374 |
1.363 |
| N9 |
C4 |
1.378 |
1.372 |
| N9 |
C1' |
1.472 |
1.464 |
| C8 |
N7 |
1.321 |
1.301 |
| C8 |
H8 |
1.103 |
1.080 |
| N7 |
C5 |
1.391 |
1.355 |
| C5 |
C6 |
1.429 |
1.405 |
| C5 |
C4 |
1.414 |
1.405 |
| C6 |
N6 |
1.333 |
1.383 |
| C6 |
N1 |
1.375 |
1.329 |
| N6 |
HN61 |
1.020 |
0.970 |
| N6 |
HN62 |
1.019 |
0.970 |
| N1 |
C2 |
1.370 |
1.320 |
| C2 |
N3 |
1.351 |
1.316 |
| C2 |
H2 |
1.104 |
1.080 |
| N3 |
C4 |
1.364 |
1.328 |
| C1' |
C2' |
1.540 |
1.529 |
| C1' |
H1'1 |
1.114 |
1.090 |
| C1' |
H1'2 |
1.115 |
1.090 |
| C2' |
O2' |
1.420 |
1.428 |
| C2' |
C3' |
1.542 |
1.530 |
| C2' |
H2' |
1.116 |
1.090 |
| O2' |
HO'2 |
0.950 |
0.967 |
| C3' |
O3' |
1.421 |
1.429 |
| C3' |
C4' |
1.538 |
1.506 |
| C3' |
H3' |
1.114 |
1.090 |
| O3' |
HO'3 |
0.950 |
0.968 |
| C4' |
O |
1.258 |
1.208 |
| C4' |
OXT |
1.251 |
1.342 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for DEA
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C8 |
N9 |
C4 |
105.7 |
107.4 |
| C8 |
N9 |
C1' |
127.5 |
126.3 |
| N9 |
C8 |
N7 |
114.4 |
110.0 |
| N9 |
C8 |
H8 |
124.5 |
125.1 |
| C4 |
N9 |
C1' |
126.8 |
126.3 |
| N9 |
C4 |
C5 |
105.9 |
106.0 |
| N9 |
C4 |
N3 |
127.3 |
134.9 |
| N9 |
C1' |
C2' |
112.1 |
109.5 |
| N9 |
C1' |
H1'1 |
111.3 |
109.5 |
| N9 |
C1' |
H1'2 |
111.2 |
109.5 |
| N7 |
C8 |
H8 |
121.0 |
125.0 |
| C8 |
N7 |
C5 |
104.0 |
109.4 |
| N7 |
C5 |
C6 |
133.2 |
134.6 |
| N7 |
C5 |
C4 |
110.0 |
107.1 |
| C6 |
C5 |
C4 |
116.8 |
118.2 |
| C5 |
C6 |
N6 |
125.3 |
120.8 |
| C5 |
C6 |
N1 |
117.3 |
118.4 |
| C5 |
C4 |
N3 |
126.9 |
119.1 |
| N6 |
C6 |
N1 |
117.4 |
120.8 |
| C6 |
N6 |
HN61 |
125.2 |
120.0 |
| C6 |
N6 |
HN62 |
106.6 |
120.0 |
| C6 |
N1 |
C2 |
119.6 |
121.2 |
| HN61 |
N6 |
HN62 |
106.7 |
120.0 |
| N1 |
C2 |
N3 |
128.0 |
122.5 |
| N1 |
C2 |
H2 |
116.9 |
118.8 |
| N3 |
C2 |
H2 |
115.2 |
118.7 |
| C2 |
N3 |
C4 |
111.5 |
120.6 |
| C2' |
C1' |
H1'1 |
111.2 |
109.4 |
| C2' |
C1' |
H1'2 |
111.2 |
109.5 |
| C1' |
C2' |
O2' |
108.9 |
109.5 |
| C1' |
C2' |
C3' |
112.0 |
109.5 |
| C1' |
C2' |
H2' |
107.7 |
109.5 |
| H1'1 |
C1' |
H1'2 |
99.2 |
109.5 |
| O2' |
C2' |
C3' |
108.1 |
109.5 |
| O2' |
C2' |
H2' |
111.6 |
109.5 |
| C2' |
O2' |
HO'2 |
108.9 |
106.8 |
| C3' |
C2' |
H2' |
108.5 |
109.4 |
| C2' |
C3' |
O3' |
110.9 |
109.5 |
| C2' |
C3' |
C4' |
112.9 |
109.5 |
| C2' |
C3' |
H3' |
105.5 |
109.4 |
| O3' |
C3' |
C4' |
107.6 |
109.5 |
| O3' |
C3' |
H3' |
111.0 |
109.4 |
| C3' |
O3' |
HO'3 |
111.0 |
106.8 |
| C4' |
C3' |
H3' |
108.9 |
109.5 |
| C3' |
C4' |
O |
116.8 |
120.0 |
| C3' |
C4' |
OXT |
117.8 |
120.0 |
| O |
C4' |
OXT |
125.4 |
120.0 |
| C4' |
OXT |
HXT |
117.9 |
120.0 |
Torsion Angles for DEA
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
N9 |
C8 |
C1' |
180.1 |
180.0 |
| C8 |
N9 |
C4 |
C5 |
0.0 |
0.3 |
| C8 |
N9 |
C4 |
N3 |
180.3 |
180.0 |
| C8 |
N9 |
C1' |
C2' |
242.0 |
90.0 |
| C8 |
N9 |
C1' |
H1'1 |
7.2 |
210.0 |
| C8 |
N9 |
C1' |
H1'2 |
116.8 |
330.0 |
| N7 |
C8 |
N9 |
H8 |
180.0 |
180.0 |
| N9 |
C8 |
N7 |
C5 |
0.2 |
359.8 |
| C8 |
N9 |
C4 |
C1' |
179.9 |
180.0 |
| C4 |
N9 |
C8 |
N7 |
359.9 |
360.0 |
| C4 |
N9 |
C8 |
H8 |
179.9 |
180.0 |
| C4 |
N9 |
C1' |
C2' |
61.9 |
270.0 |
| C4 |
N9 |
C1' |
H1'1 |
187.1 |
30.0 |
| C4 |
N9 |
C1' |
H1'2 |
296.7 |
150.0 |
| N7 |
C5 |
C4 |
N9 |
0.1 |
359.6 |
| C6 |
C5 |
C4 |
N9 |
179.9 |
180.3 |
| C5 |
C4 |
N9 |
N3 |
179.7 |
180.3 |
| C2 |
N3 |
C4 |
N9 |
179.7 |
180.0 |
| C8 |
N9 |
C1' |
C4 |
180.1 |
180.0 |
| C1' |
N9 |
C8 |
N7 |
179.7 |
179.9 |
| C1' |
N9 |
C8 |
H8 |
359.7 |
360.0 |
| C1' |
N9 |
C4 |
C5 |
180.1 |
180.3 |
| C1' |
N9 |
C4 |
N3 |
0.4 |
360.0 |
| C2' |
C1' |
N9 |
H1'1 |
234.8 |
240.0 |
| C2' |
C1' |
N9 |
H1'2 |
125.2 |
120.0 |
| N9 |
C1' |
C2' |
O2' |
60.6 |
60.0 |
| N9 |
C1' |
C2' |
C3' |
180.2 |
180.0 |
| N9 |
C1' |
C2' |
H2' |
299.4 |
300.0 |
| H1'1 |
C1' |
N9 |
H1'2 |
250.4 |
240.0 |
| N7 |
C8 |
N9 |
C4 |
359.9 |
360.0 |
| N7 |
C8 |
N9 |
C1' |
179.7 |
179.9 |
| N9 |
C8 |
N7 |
H8 |
180.0 |
180.0 |
| C8 |
N7 |
C5 |
C6 |
180.0 |
179.5 |
| C8 |
N7 |
C5 |
C4 |
359.8 |
0.4 |
| H8 |
C8 |
N9 |
C4 |
179.9 |
180.0 |
| H8 |
C8 |
N9 |
C1' |
359.7 |
360.0 |
| N9 |
C8 |
H8 |
N7 |
180.0 |
180.0 |
| H8 |
C8 |
N7 |
C5 |
180.2 |
179.7 |
| N9 |
C4 |
C5 |
N7 |
0.1 |
359.6 |
| C5 |
N7 |
C8 |
H8 |
180.2 |
179.7 |
| C6 |
C5 |
N7 |
C4 |
180.2 |
179.1 |
| N7 |
C5 |
C6 |
N6 |
359.8 |
0.6 |
| N7 |
C5 |
C6 |
N1 |
180.3 |
180.5 |
| N7 |
C5 |
C4 |
N3 |
179.8 |
179.8 |
| N9 |
C4 |
C5 |
C6 |
179.9 |
180.3 |
| N7 |
C5 |
C6 |
C4 |
179.8 |
181.0 |
| C6 |
C5 |
C4 |
N3 |
359.7 |
0.6 |
| N6 |
C6 |
C5 |
N1 |
179.5 |
180.1 |
| C5 |
C6 |
N6 |
HN61 |
180.1 |
179.7 |
| C5 |
C6 |
N6 |
HN62 |
54.7 |
359.6 |
| C5 |
C6 |
N1 |
C2 |
359.6 |
0.2 |
| C5 |
C4 |
N9 |
C1' |
180.1 |
180.3 |
| N9 |
C4 |
C5 |
N3 |
180.3 |
179.8 |
| N7 |
C5 |
C4 |
C6 |
180.2 |
179.3 |
| C4 |
C5 |
C6 |
N6 |
180.0 |
179.6 |
| C4 |
C5 |
C6 |
N1 |
0.5 |
359.5 |
| C2 |
N3 |
C4 |
C5 |
0.1 |
359.7 |
| N6 |
C6 |
C5 |
C4 |
180.0 |
179.6 |
| C5 |
C6 |
N6 |
N1 |
180.5 |
179.9 |
| N6 |
C6 |
N1 |
C2 |
180.0 |
180.0 |
| HN61 |
N6 |
C6 |
HN62 |
125.3 |
180.1 |
| N1 |
C6 |
C5 |
C4 |
0.5 |
359.5 |
| C5 |
C6 |
N1 |
N6 |
179.6 |
180.1 |
| N1 |
C6 |
N6 |
HN61 |
359.6 |
359.8 |
| N1 |
C6 |
N6 |
HN62 |
234.2 |
179.7 |
| C6 |
N1 |
C2 |
N3 |
0.2 |
0.1 |
| C6 |
N1 |
C2 |
H2 |
180.2 |
180.1 |
| HN61 |
N6 |
C6 |
N1 |
359.6 |
359.8 |
| C6 |
N6 |
HN61 |
HN62 |
234.7 |
179.9 |
| HN62 |
N6 |
C6 |
N1 |
234.2 |
179.7 |
| C6 |
N6 |
HN62 |
HN61 |
135.9 |
180.1 |
| N3 |
C2 |
N1 |
H2 |
180.0 |
180.0 |
| N1 |
C2 |
N3 |
C4 |
0.0 |
360.0 |
| N9 |
C4 |
N3 |
C2 |
179.7 |
180.0 |
| C5 |
C4 |
N3 |
C2 |
0.1 |
359.7 |
| N1 |
C2 |
N3 |
H2 |
180.0 |
180.0 |
| N1 |
C2 |
H2 |
N3 |
180.0 |
180.0 |
| H2 |
C2 |
N3 |
C4 |
180.0 |
180.0 |
| N3 |
C4 |
N9 |
C1' |
0.4 |
360.0 |
| N9 |
C4 |
N3 |
C5 |
179.7 |
180.3 |
| C4 |
N3 |
C2 |
H2 |
180.0 |
180.0 |
| N9 |
C1' |
C2' |
H1'1 |
125.3 |
120.0 |
| N9 |
C1' |
C2' |
H1'2 |
234.8 |
240.0 |
| H1'1 |
C1' |
C2' |
H1'2 |
109.5 |
120.0 |
| O2' |
C2' |
C1' |
C3' |
240.4 |
240.0 |
| O2' |
C2' |
C1' |
H2' |
121.2 |
120.0 |
| C1' |
C2' |
O2' |
HO'2 |
180.0 |
60.0 |
| C3' |
C2' |
C1' |
H2' |
240.8 |
240.1 |
| C1' |
C2' |
C3' |
O3' |
60.2 |
60.0 |
| C1' |
C2' |
C3' |
C4' |
181.1 |
180.0 |
| C1' |
C2' |
C3' |
H3' |
300.0 |
300.0 |
| N9 |
C1' |
H1'1 |
C2' |
234.3 |
240.0 |
| N9 |
C1' |
H1'1 |
H1'2 |
117.2 |
120.0 |
| C2' |
C1' |
H1'1 |
H1'2 |
242.9 |
240.0 |
| H1'1 |
C1' |
C2' |
O2' |
295.3 |
300.0 |
| H1'1 |
C1' |
C2' |
C3' |
54.9 |
60.0 |
| H1'1 |
C1' |
C2' |
H2' |
174.2 |
180.0 |
| N9 |
C1' |
H1'2 |
C2' |
125.7 |
120.0 |
| N9 |
C1' |
H1'2 |
H1'1 |
242.8 |
240.0 |
| C2' |
C1' |
H1'2 |
H1'1 |
117.1 |
120.0 |
| H1'2 |
C1' |
C2' |
O2' |
185.8 |
180.0 |
| H1'2 |
C1' |
C2' |
C3' |
305.4 |
300.0 |
| H1'2 |
C1' |
C2' |
H2' |
64.6 |
60.0 |
| O2' |
C2' |
C1' |
H1'1 |
295.3 |
300.0 |
| O2' |
C2' |
C1' |
H1'2 |
185.8 |
180.0 |
| C1' |
C2' |
O2' |
C3' |
122.0 |
120.0 |
| C1' |
C2' |
O2' |
H2' |
241.2 |
240.0 |
| C3' |
C2' |
O2' |
H2' |
119.2 |
119.9 |
| O2' |
C2' |
C3' |
O3' |
180.3 |
180.0 |
| O2' |
C2' |
C3' |
C4' |
301.2 |
300.0 |
| O2' |
C2' |
C3' |
H3' |
60.0 |
60.1 |
| C3' |
C2' |
C1' |
H1'1 |
54.9 |
60.0 |
| C3' |
C2' |
C1' |
H1'2 |
305.4 |
300.0 |
| C1' |
C2' |
C3' |
O2' |
239.9 |
240.0 |
| C1' |
C2' |
C3' |
H2' |
118.7 |
120.0 |
| O2' |
C2' |
C3' |
H2' |
238.8 |
240.0 |
| C3' |
C2' |
O2' |
HO'2 |
58.0 |
300.0 |
| O3' |
C3' |
C2' |
C4' |
239.1 |
240.0 |
| O3' |
C3' |
C2' |
H3' |
120.3 |
119.9 |
| C2' |
C3' |
O3' |
HO'3 |
180.0 |
60.1 |
| C4' |
C3' |
C2' |
H3' |
241.2 |
240.0 |
| C2' |
C3' |
C4' |
O |
150.3 |
240.0 |
| C2' |
C3' |
C4' |
OXT |
330.8 |
59.9 |
| H2' |
C2' |
C1' |
H1'1 |
174.2 |
180.0 |
| H2' |
C2' |
C1' |
H1'2 |
64.6 |
60.0 |
| C1' |
C2' |
H2' |
O2' |
119.5 |
120.0 |
| C1' |
C2' |
H2' |
C3' |
238.6 |
240.0 |
| O2' |
C2' |
H2' |
C3' |
119.0 |
120.0 |
| H2' |
C2' |
O2' |
HO'2 |
298.8 |
180.0 |
| H2' |
C2' |
C3' |
O3' |
301.5 |
300.0 |
| H2' |
C2' |
C3' |
C4' |
62.4 |
60.0 |
| H2' |
C2' |
C3' |
H3' |
181.2 |
180.0 |
| HO'2 |
O2' |
C2' |
C3' |
58.0 |
300.0 |
| HO'2 |
O2' |
C2' |
H2' |
298.8 |
180.0 |
| O3' |
C3' |
C2' |
H2' |
301.5 |
300.0 |
| C2' |
C3' |
O3' |
C4' |
124.0 |
120.1 |
| C2' |
C3' |
O3' |
H3' |
243.1 |
240.1 |
| C4' |
C3' |
O3' |
H3' |
119.1 |
120.0 |
| O3' |
C3' |
C4' |
O |
273.1 |
360.0 |
| O3' |
C3' |
C4' |
OXT |
93.6 |
179.9 |
| C4' |
C3' |
C2' |
H2' |
62.4 |
60.0 |
| C2' |
C3' |
C4' |
O3' |
237.2 |
240.0 |
| C2' |
C3' |
C4' |
H3' |
116.8 |
120.0 |
| O3' |
C3' |
C4' |
H3' |
239.6 |
240.0 |
| C4' |
C3' |
O3' |
HO'3 |
56.0 |
300.0 |
| O |
C4' |
C3' |
OXT |
179.4 |
180.1 |
| C3' |
C4' |
OXT |
HXT |
180.0 |
180.0 |
| H3' |
C3' |
C2' |
H2' |
181.2 |
180.0 |
| C2' |
C3' |
H3' |
O3' |
120.2 |
120.0 |
| C2' |
C3' |
H3' |
C4' |
238.5 |
240.0 |
| O3' |
C3' |
H3' |
C4' |
118.3 |
120.0 |
| H3' |
C3' |
O3' |
HO'3 |
296.9 |
180.0 |
| H3' |
C3' |
C4' |
O |
33.5 |
120.0 |
| H3' |
C3' |
C4' |
OXT |
214.0 |
299.9 |
| HO'3 |
O3' |
C3' |
C4' |
56.0 |
300.0 |
| HO'3 |
O3' |
C3' |
H3' |
296.9 |
180.0 |
| O |
C4' |
C3' |
H3' |
33.5 |
120.0 |
| C3' |
C4' |
O |
OXT |
180.6 |
179.9 |
| O |
C4' |
OXT |
HXT |
0.6 |
359.9 |
| OXT |
C4' |
C3' |
H3' |
214.0 |
299.9 |
| C3' |
C4' |
OXT |
O |
179.4 |
180.1 |