PDB Chemical Component DE2

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DE2

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.493 1.507
O2 C2 1.225 1.207
C2 C3 1.528 1.508
C3 O3 1.448 1.429
C3 C4 1.544 1.529
C4 O5 1.437 1.430
C1 H1 1.100 1.090
C1 H2 1.100 1.090
C1 H3 1.100 1.090
C3 H4 1.100 1.090
O3 H5 0.950 0.967
C4 H6 1.100 1.091
C4 H7 1.100 1.090
O5 H8 0.950 0.967

Bond Angles for DE2

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C1 C2 C3 117.5 120.0
O2 C2 C3 122.0 120.0
C2 C3 O3 111.5 109.4
C2 C3 C4 113.9 109.5
C2 C3 H4 106.4 109.5
O3 C3 C4 111.0 109.5
O3 C3 H4 107.4 109.5
C3 O3 H5 109.5 114.0
C3 C4 O5 113.1 109.5
C4 C3 H4 106.2 109.5
C3 C4 H6 108.6 109.5
C3 C4 H7 108.6 109.5
O5 C4 H6 108.5 109.5
O5 C4 H7 108.6 109.4
C4 O5 H8 109.5 114.0
H1 C1 H2 109.5 109.5
H1 C1 H3 109.5 109.5
H2 C1 H3 109.5 109.4
H6 C4 H7 109.4 109.5

Torsion Angles for DE2

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2 C2 C1 C3 164.1 179.8
C1 C2 C3 O3 109.4 164.8
C1 C2 C3 C4 236.0 284.7
C1 C2 C3 H4 352.7 44.7
C1 C2 O2 C3 196.7 180.2
O2 C2 C3 O3 305.9 345.0
O2 C2 C3 C4 72.5 105.0
O2 C2 C3 H4 189.2 225.0
O3 C3 C2 C4 233.4 240.0
O3 C3 C2 H4 116.8 120.0
C2 C3 O3 H5 20.5 59.9
C2 C3 C4 O5 284.9 175.0
C4 C3 C2 H4 243.3 240.0
C2 C3 C4 H6 45.4 295.0
C2 C3 C4 H7 164.3 55.0
C2 C3 O3 C4 128.1 120.0
C2 C3 O3 H4 243.8 240.0
O3 C3 C4 O5 51.7 295.0
C4 C3 O3 H4 115.7 120.0
O3 C3 C4 H6 172.2 54.9
O3 C3 C4 H7 291.1 175.0
C2 C3 C4 O3 233.2 240.0
C2 C3 C4 H4 116.8 120.0
O3 C3 C4 H4 243.6 239.9
C4 C3 O3 H5 252.4 300.0
O5 C4 C3 H6 239.4 240.0
O5 C4 C3 H7 120.6 120.0
C3 C4 O5 H8 180.0 180.0
H6 C4 C3 H7 241.1 240.0
O5 C4 C3 H4 168.1 55.0
C3 C4 O5 H6 120.6 120.0
C3 C4 O5 H7 239.5 240.0
H6 C4 O5 H7 118.9 120.0
H1 C1 C2 C3 195.9 180.3
H2 C1 H1 H3 120.0 120.0
H2 C1 C2 C3 315.9 300.3
H1 C1 H2 H3 240.0 239.9
H3 C1 C2 C3 75.9 60.2
H1 C1 H3 H2 120.0 120.1
C2 C3 H4 O3 119.5 120.0
C2 C3 H4 C4 238.3 240.0
O3 C3 H4 C4 118.8 120.0
H4 C3 O3 H5 136.7 179.9
H4 C3 C4 O5 168.1 55.0
H4 C3 C4 H6 288.7 175.0
H4 C3 C4 H7 47.6 295.0
H5 O3 C3 C4 252.4 300.0
H5 O3 C3 H4 136.7 179.9
C3 C4 H6 O5 236.7 240.0
H6 C4 C3 H4 288.7 175.0
C3 C4 H6 H7 118.3 120.0
O5 C4 H6 H7 241.7 240.1
H6 C4 O5 H8 59.4 59.9
C3 C4 H7 O5 123.3 120.0
H7 C4 C3 H4 47.6 295.0
C3 C4 H7 H6 241.6 240.0
O5 C4 H7 H6 118.3 120.0
H7 C4 O5 H8 300.5 300.0
H8 O5 C4 H6 59.4 59.9
H8 O5 C4 H7 300.5 300.0