PDB Chemical Component DDZ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DDZ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.469 |
1.470 |
| CA |
C |
1.535 |
1.506 |
| CA |
CB |
1.594 |
1.530 |
| C |
O |
1.240 |
1.208 |
| C |
OXT |
1.341 |
1.342 |
| OG1 |
CB |
1.382 |
1.428 |
| OG2 |
CB |
1.445 |
1.428 |
| N |
H |
1.000 |
1.010 |
| N |
H2 |
1.000 |
1.008 |
| CA |
HA |
1.100 |
1.090 |
| CB |
HB |
1.100 |
1.090 |
| OXT |
HXT |
0.951 |
0.968 |
| OG1 |
HG1 |
0.950 |
0.968 |
| OG2 |
HG2 |
0.950 |
0.968 |
Bond Angles for DDZ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
CA |
C |
120.4 |
109.5 |
| N |
CA |
CB |
107.4 |
109.4 |
| CA |
N |
H |
109.5 |
110.9 |
| CA |
N |
H2 |
109.5 |
111.0 |
| N |
CA |
HA |
102.9 |
109.4 |
| C |
CA |
CB |
108.2 |
109.5 |
| CA |
C |
O |
118.9 |
120.0 |
| CA |
C |
OXT |
119.5 |
120.0 |
| C |
CA |
HA |
102.0 |
109.5 |
| CA |
CB |
OG1 |
112.2 |
109.4 |
| CA |
CB |
OG2 |
98.2 |
109.5 |
| CB |
CA |
HA |
116.4 |
109.4 |
| CA |
CB |
HB |
118.3 |
109.4 |
| O |
C |
OXT |
121.5 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| OG1 |
CB |
OG2 |
118.0 |
109.5 |
| OG1 |
CB |
HB |
98.8 |
109.5 |
| CB |
OG1 |
HG1 |
109.5 |
114.0 |
| OG2 |
CB |
HB |
112.6 |
109.5 |
| CB |
OG2 |
HG2 |
109.5 |
114.0 |
| H |
N |
H2 |
109.5 |
111.0 |
Torsion Angles for DDZ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C |
CA |
N |
CB |
124.2 |
120.0 |
| N |
CA |
C |
O |
120.7 |
340.0 |
| N |
CA |
C |
OXT |
302.3 |
160.0 |
| C |
CA |
N |
HA |
247.5 |
239.9 |
| N |
CA |
CB |
OG1 |
300.3 |
185.0 |
| N |
CA |
CB |
OG2 |
175.6 |
305.0 |
| CB |
CA |
N |
HA |
123.3 |
119.9 |
| N |
CA |
CB |
HB |
54.4 |
65.0 |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| N |
CA |
C |
CB |
236.2 |
240.0 |
| C |
CA |
N |
H |
105.8 |
59.9 |
| C |
CA |
N |
H2 |
225.8 |
183.9 |
| N |
CA |
C |
HA |
112.9 |
120.0 |
| C |
CA |
CB |
OG1 |
169.0 |
65.0 |
| C |
CA |
CB |
OG2 |
44.3 |
185.0 |
| CB |
CA |
C |
HA |
236.7 |
240.0 |
| C |
CA |
CB |
HB |
283.0 |
305.0 |
| O |
C |
CA |
OXT |
178.4 |
180.0 |
| CA |
C |
OXT |
HXT |
178.4 |
180.1 |
| N |
CA |
CB |
C |
131.4 |
120.0 |
| CB |
CA |
N |
H |
341.6 |
299.9 |
| CB |
CA |
N |
H2 |
101.6 |
63.9 |
| N |
CA |
CB |
HA |
245.4 |
240.1 |
| CB |
CA |
C |
O |
244.6 |
100.0 |
| CB |
CA |
C |
OXT |
66.2 |
280.0 |
| C |
CA |
CB |
HA |
114.1 |
120.0 |
| OG1 |
CB |
CA |
OG2 |
124.7 |
239.9 |
| OG1 |
CB |
CA |
HB |
246.0 |
119.9 |
| CA |
CB |
OG1 |
HG1 |
165.9 |
60.1 |
| OG2 |
CB |
CA |
HB |
121.2 |
240.0 |
| CA |
CB |
OG2 |
HG2 |
23.0 |
179.9 |
| O |
C |
CA |
CB |
244.6 |
100.0 |
| CA |
C |
O |
OXT |
181.6 |
180.0 |
| O |
C |
CA |
HA |
7.8 |
220.0 |
| O |
C |
OXT |
HXT |
0.0 |
0.0 |
| OXT |
C |
CA |
CB |
66.2 |
280.0 |
| CA |
C |
OXT |
O |
178.3 |
180.0 |
| OXT |
C |
CA |
HA |
189.4 |
40.0 |
| CA |
CB |
OG1 |
OG2 |
247.0 |
120.0 |
| OG1 |
CB |
CA |
HA |
54.9 |
304.9 |
| CA |
CB |
OG1 |
HB |
125.6 |
240.1 |
| OG2 |
CB |
OG1 |
HB |
238.5 |
120.1 |
| OG1 |
CB |
OG2 |
HG2 |
262.5 |
299.9 |
| CA |
CB |
OG2 |
OG1 |
120.5 |
240.0 |
| OG2 |
CB |
CA |
HA |
290.2 |
65.0 |
| CA |
CB |
OG2 |
HB |
234.6 |
120.0 |
| OG1 |
CB |
OG2 |
HB |
114.1 |
240.0 |
| OG2 |
CB |
OG1 |
HG1 |
278.9 |
300.1 |
| H |
N |
CA |
C |
105.8 |
59.9 |
| H |
N |
CA |
CB |
341.6 |
299.9 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CA |
HA |
218.3 |
180.0 |
| H2 |
N |
CA |
C |
225.8 |
183.9 |
| H2 |
N |
CA |
CB |
101.6 |
63.9 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |
| H2 |
N |
CA |
HA |
338.3 |
304.0 |
| N |
CA |
HA |
C |
234.6 |
240.0 |
| N |
CA |
HA |
CB |
117.1 |
119.9 |
| HA |
CA |
N |
H |
218.3 |
180.0 |
| HA |
CA |
N |
H2 |
338.3 |
304.0 |
| C |
CA |
HA |
CB |
242.5 |
240.0 |
| HA |
CA |
C |
O |
7.8 |
220.0 |
| HA |
CA |
C |
OXT |
189.4 |
40.0 |
| HA |
CA |
CB |
OG1 |
54.9 |
304.9 |
| HA |
CA |
CB |
OG2 |
290.2 |
65.0 |
| HA |
CA |
CB |
HB |
169.0 |
185.0 |
| CA |
CB |
HB |
OG1 |
238.9 |
119.9 |
| CA |
CB |
HB |
OG2 |
113.6 |
240.0 |
| HB |
CB |
CA |
HA |
169.0 |
185.0 |
| OG1 |
CB |
HB |
OG2 |
234.7 |
120.1 |
| HB |
CB |
OG1 |
HG1 |
40.4 |
180.0 |
| HB |
CB |
OG2 |
HG2 |
148.4 |
60.0 |
| HG1 |
OG1 |
CB |
OG2 |
278.9 |
300.1 |
| HG1 |
OG1 |
CB |
HB |
40.4 |
180.0 |
| HG2 |
OG2 |
CB |
HB |
148.4 |
60.0 |