PDB Chemical Component DDY

Ideal Model

Chemical Description

Name 2',3'-DIDEOXYCYTOSINE-5'-DIPHOSPHATE
Synonyms DDCDP
Formula C9 H15 N3 O9 P2
Formal charge 0
Molecular weight 371.178 g/mol
Component type NON-POLYMER

Chemical features

Atom count 38
Chiral atom count 2
Chiral atoms C4' C1'
Bond count 39
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) [(2S,5R)-5-(4-amino-2-oxopyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl trihydrogen diphosphate
Systematic name (OpenEye OEToolkits) [(2S,5R)-5-(4-azanyl-2-oxo-pyrimidin-1-yl)oxolan-2-yl]methyl phosphono hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=C1)[C@H]2CC[C@@H](CO[P](O)(=O)O[P](O)(O)=O)O2
SMILES (CACTVS) NC1=NC(=O)N(C=C1)[CH]2CC[CH](CO[P](O)(=O)O[P](O)(O)=O)O2
Stereo SMILES (OpenEye) C1C[C@@H](O[C@@H]1CO[P@@](=O)(O)OP(=O)(O)O)N2C=CC(=NC2=O)N
InChI descriptor InChI=1S/C9H15N3O9P2/c10-7-3-4-12(9(13)11-7)8-2-1-6(20-8)5-19-23(17,18)21-22(14,15)16/h3-4,6,8H,1-2,5H2,(H,17,18)(H2,10,11,13)(H2,14,15,16)/t6-,8+/m0/s1
InChIKey descriptor FVSQWXITYSICAK-POYBYMJQSA-N

Status Information

Last modified 2020-06-17
Created 2004-04-19
Release status REL
Model PDB code 1S9F
Processing site RCSB