PDB Chemical Component DDR

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DDR

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C30 C29 1.513 1.530
C29 C28 1.521 1.529
C8 C9 1.519 1.530
C8 C7 1.513 1.530
C10 C9 1.504 1.530
C28 C27 1.521 1.530
C7 C6 1.521 1.530
C6 C5 1.525 1.530
C27 C26 1.519 1.530
C5 C4 1.528 1.530
C26 C25 1.517 1.530
C4 C3 1.525 1.529
C25 C24 1.525 1.530
C3 C2 1.513 1.530
C2 C1 1.503 1.507
C24 C23 1.520 1.530
C23 C22 1.522 1.530
C1 O1 1.218 1.208
C1 O51 1.440 1.343
O21 C21 1.247 1.208
C22 C21 1.506 1.507
O51 C51 1.428 1.452
C21 O52 1.460 1.343
O52 C52 1.429 1.452
C51 C52 1.519 1.530
C52 C53 1.529 1.530
C53 O53 1.440 1.429
C22 H221 1.100 1.090
C22 H222 1.100 1.090
C23 H231 1.100 1.090
C23 H232 1.100 1.090
C24 H241 1.100 1.090
C24 H242 1.099 1.090
C25 H251 1.100 1.089
C25 H252 1.100 1.090
C26 H261 1.100 1.090
C26 H262 1.100 1.090
C27 H271 1.100 1.090
C27 H272 1.100 1.090
C28 H281 1.100 1.090
C28 H282 1.101 1.090
C29 H291 1.100 1.090
C29 H292 1.100 1.090
C30 H301 1.100 1.090
C30 H302 1.100 1.091
C30 H303 1.100 1.091
C52 H52 1.100 1.090
C53 H531 1.099 1.089
C53 H532 1.100 1.090
O53 HO53 0.950 0.967
C51 H511 1.100 1.090
C51 H512 1.100 1.090
C2 H21 1.100 1.090
C2 H22 1.099 1.091
C3 H31 1.100 1.090
C3 H32 1.100 1.090
C4 H41 1.100 1.090
C4 H42 1.100 1.090
C5 H51 1.100 1.090
C5 H52A 1.100 1.091
C6 H61 1.100 1.090
C6 H62 1.100 1.090
C7 H71 1.100 1.090
C7 H72 1.100 1.089
C8 H81 1.100 1.090
C8 H82 1.100 1.091
C9 H91 1.100 1.090
C9 H92 1.099 1.089
C10 H101 1.100 1.090
C10 H102 1.100 1.091
C10 H103 1.100 1.090

Bond Angles for DDR

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C30 C29 H291 108.8 109.5
C30 C29 H292 108.4 109.5
C29 C28 H281 109.7 109.5
C29 C28 H282 110.0 109.5
C9 C8 H81 109.8 109.5
C9 C8 H82 110.0 109.5
C8 C9 H91 109.2 109.4
C8 C9 H92 109.0 109.5
C8 C7 H71 108.8 109.5
C8 C7 H72 108.3 109.5
C10 C9 H91 109.2 109.5
C10 C9 H92 109.0 109.5
C28 C27 H271 109.0 109.5
C28 C27 H272 108.6 109.5
C7 C6 H61 108.7 109.5
C7 C6 H62 108.2 109.4
C6 C5 H51 109.4 109.4
C6 C5 H52A 109.3 109.5
C27 C26 H261 109.1 109.4
C27 C26 H262 108.9 109.5
C5 C4 H41 109.7 109.4
C5 C4 H42 109.8 109.4
C26 C25 H251 109.1 109.4
C26 C25 H252 108.8 109.5
C4 C3 H31 109.2 109.5
C4 C3 H32 109.1 109.5
C25 C24 H241 108.6 109.5
C25 C24 H242 108.0 109.5
C3 C2 H21 109.5 109.5
C3 C2 H22 109.5 109.5
C24 C23 H231 108.8 109.5
C24 C23 H232 108.3 109.5
C23 C22 H221 108.6 109.5
C23 C22 H222 107.9 109.5
O21 C21 O52 124.2 120.0
C22 C21 O52 114.2 120.0
O51 C51 H511 109.5 109.4
O51 C51 H512 109.6 109.4
C21 O52 C52 122.0 117.0
O52 C52 C53 109.1 109.5
O52 C52 H52 109.9 109.5
C51 C52 H52 112.0 109.4
C52 C53 O53 112.7 109.5
C53 C52 H52 110.8 109.5
C52 C53 H531 108.4 109.5
C52 C53 H532 107.7 109.5
O53 C53 H531 108.4 109.5
O53 C53 H532 107.7 109.4
C53 O53 HO53 109.5 114.0
H221 C22 H222 111.7 109.5
H231 C23 H232 111.1 109.5
H241 C24 H242 111.5 109.4
H251 C25 H252 110.5 109.5
H261 C26 H262 110.2 109.4
H271 C27 H272 110.7 109.4
H281 C28 H282 108.8 109.5
H291 C29 H292 111.0 109.4
H301 C30 H302 109.5 109.5
H301 C30 H303 109.5 109.5
H302 C30 H303 109.5 109.4
H531 C53 H532 112.1 109.4
H511 C51 H512 109.3 109.5
H21 C2 H22 109.4 109.5
H31 C3 H32 110.0 109.5
H41 C4 H42 108.9 109.5
H51 C5 H52A 109.7 109.4
H61 C6 H62 111.3 109.5
H71 C7 H72 111.1 109.5
H81 C8 H82 108.8 109.4
H91 C9 H92 110.2 109.5
H101 C10 H102 109.5 109.4
H101 C10 H103 109.5 109.5
H102 C10 H103 109.5 109.5

Torsion Angles for DDR

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C30 C29 C28 H281 268.7 60.0
C30 C29 C28 H282 28.4 300.0
H291 C29 C30 H292 239.2 119.9
C29 C28 C27 H271 318.7 60.0
C29 C28 C27 H272 79.3 300.0
H281 C28 C29 H282 240.3 120.1
C9 C8 C7 H71 36.3 60.0
C9 C8 C7 H72 157.2 300.0
C10 C9 C8 H91 240.0 240.0
C10 C9 C8 H92 119.6 120.0
H81 C8 C9 H82 240.4 119.9
H91 C9 C8 H92 239.6 240.0
C8 C7 C6 H61 260.4 60.0
C8 C7 C6 H62 21.4 300.0
H71 C7 C8 H72 239.1 120.0
C10 C9 C8 H81 10.6 60.0
C10 C9 C8 H82 130.2 300.0
C8 C9 C10 H91 120.0 120.0
C8 C9 C10 H92 240.4 240.0
H91 C9 C10 H92 120.4 120.0
C28 C27 C26 H261 308.3 60.0
C28 C27 C26 H262 68.7 300.1
H271 C27 C28 H272 239.3 120.0
C7 C6 C5 H51 272.8 60.0
C7 C6 C5 H52A 32.9 300.0
H61 C6 C7 H62 239.0 120.0
C6 C5 C4 H41 305.8 60.0
C6 C5 C4 H42 65.5 300.0
H51 C5 C6 H52A 239.9 119.9
C27 C26 C25 H251 278.9 60.0
C27 C26 C25 H252 39.4 300.0
H261 C26 C27 H262 239.6 119.9
C5 C4 C3 H31 193.6 60.0
C5 C4 C3 H32 313.9 300.0
H41 C4 C5 H42 240.3 120.0
C26 C25 C24 H241 203.6 60.0
C26 C25 C24 H242 324.7 300.1
H251 C25 C26 H252 239.5 120.0
C4 C3 C2 H21 291.6 60.0
C4 C3 C2 H22 51.5 300.0
H31 C3 C4 H32 239.7 120.0
C25 C24 C23 H231 280.2 60.0
C25 C24 C23 H232 41.0 300.0
H241 C24 C25 H242 238.9 119.9
H21 C2 C3 H22 240.0 120.0
C24 C23 C22 H221 253.9 60.0
C24 C23 C22 H222 15.1 300.0
H231 C23 C24 H232 239.1 120.0
C23 C22 C21 O52 220.8 180.3
H221 C22 C23 H222 238.8 120.0
C1 O51 C51 H511 193.8 60.0
C1 O51 C51 H512 313.8 300.1
C22 C21 O21 O52 178.9 180.2
O21 C21 O52 C52 359.1 360.0
O21 C21 C22 O52 181.0 179.8
C22 C21 O52 C52 180.1 179.8
O51 C51 C52 H52 292.0 175.0
H511 C51 O51 H512 240.1 119.9
C21 O52 C52 C53 134.3 90.0
C21 O52 C52 H52 12.6 330.0
C51 C52 O52 H52 237.6 240.0
O52 C52 C53 O53 197.7 64.9
C53 C52 O52 H52 121.7 120.0
O52 C52 C53 H531 317.7 185.0
O52 C52 C53 H532 79.2 305.0
O52 C52 C51 H52 121.1 120.0
C53 C52 C51 H52 238.4 240.1
C51 C52 C53 H531 201.2 65.0
C51 C52 C53 H532 322.6 185.0
O52 C52 C53 H52 238.9 239.9
C51 C52 C53 H52 122.3 119.9
O53 C53 C52 H531 240.0 239.9
O53 C53 C52 H532 118.6 120.0
C52 C53 O53 HO53 350.3 180.1
H531 C53 C52 H532 238.6 240.0
O53 C53 C52 H52 318.9 185.0
C52 C53 O53 H531 120.0 120.1
C52 C53 O53 H532 241.4 240.0
H531 C53 O53 H532 121.4 120.0
C23 C22 H221 H222 118.9 240.0
H221 C22 C21 O52 100.8 300.3
C23 C22 H222 H221 240.8 120.0
H222 C22 C21 O52 339.6 60.3
C24 C23 H231 H232 119.1 240.0
H231 C23 C22 H221 133.9 180.0
H231 C23 C22 H222 255.1 60.0
C24 C23 H232 H231 240.6 120.0
H232 C23 C22 H221 13.0 300.0
H232 C23 C22 H222 134.2 180.0
C25 C24 H241 H242 119.0 240.0
H241 C24 C23 H231 160.2 180.0
H241 C24 C23 H232 281.0 60.0
C25 C24 H242 H241 240.7 119.9
H242 C24 C23 H231 39.1 300.0
H242 C24 C23 H232 159.9 180.0
C26 C25 H251 H252 119.5 240.0
H251 C25 C24 H241 83.6 180.0
H251 C25 C24 H242 204.7 60.0
C26 C25 H252 H251 240.3 120.0
H252 C25 C24 H241 323.0 300.0
H252 C25 C24 H242 84.2 180.0
C27 C26 H261 H262 119.6 240.1
H261 C26 C25 H251 158.8 180.0
H261 C26 C25 H252 279.4 60.0
C27 C26 H262 H261 240.3 119.9
H262 C26 C25 H251 38.5 300.0
H262 C26 C25 H252 159.0 180.0
C28 C27 H271 H272 119.3 240.0
H271 C27 C26 H261 188.3 180.0
H271 C27 C26 H262 308.6 60.1
C28 C27 H272 H271 240.4 120.0
H272 C27 C26 H261 67.6 299.9
H272 C27 C26 H262 188.0 180.0
C29 C28 H281 H282 120.4 239.9
H281 C28 C27 H271 198.7 180.0
H281 C28 C27 H272 319.3 60.0
C29 C28 H282 H281 239.8 120.1
H282 C28 C27 H271 79.0 300.0
H282 C28 C27 H272 199.7 180.0
C30 C29 H291 H292 119.2 240.0
H291 C29 C28 H281 148.7 180.1
H291 C29 C28 H282 268.4 60.0
C30 C29 H292 H291 240.6 120.0
H292 C29 C28 H281 27.9 300.0
H292 C29 C28 H282 147.6 180.0
H301 C30 C29 H291 300.5 180.0
H301 C30 C29 H292 61.3 60.1
H302 C30 H301 H303 120.0 120.0
H302 C30 C29 H291 60.4 300.0
H302 C30 C29 H292 181.3 180.1
H301 C30 H302 H303 240.0 240.0
H303 C30 C29 H291 180.5 59.9
H303 C30 C29 H292 301.3 300.0
H301 C30 H303 H302 120.0 120.0
O52 C52 H52 C53 120.7 120.1
H52 C52 C53 O53 318.9 185.0
H52 C52 C53 H531 78.9 305.1
H52 C52 C53 H532 200.3 65.0
C52 C53 H531 O53 237.3 239.9
H531 C53 C52 H52 78.9 305.1
C52 C53 H531 H532 118.7 120.0
O53 C53 H531 H532 241.3 240.0
H531 C53 O53 HO53 230.4 60.0
C52 C53 H532 O53 121.8 120.0
H532 C53 C52 H52 200.3 65.0
C52 C53 H532 H531 240.9 240.0
O53 C53 H532 H531 119.1 120.0
H532 C53 O53 HO53 109.0 300.0
HO53 O53 C53 H531 230.4 60.0
HO53 O53 C53 H532 109.0 300.0
O51 C51 H511 H512 120.1 240.1
H511 C51 C52 H52 172.0 294.9
O51 C51 H512 H511 239.9 119.9
H512 C51 C52 H52 52.1 55.0
C3 C2 H21 H22 120.1 240.0
C3 C2 H22 H21 240.0 120.0
C4 C3 H31 H32 119.7 239.9
H31 C3 C2 H21 171.6 180.0
H31 C3 C2 H22 291.5 60.0
C4 C3 H32 H31 240.2 120.0
H32 C3 C2 H21 51.3 300.0
H32 C3 C2 H22 171.2 179.9
C5 C4 H41 H42 120.3 240.0
H41 C4 C3 H31 73.6 180.0
H41 C4 C3 H32 193.9 60.0
C5 C4 H42 H41 239.8 120.0
H42 C4 C3 H31 313.9 300.1
H42 C4 C3 H32 74.2 180.0
C6 C5 H51 H52A 119.9 240.0
H51 C5 C4 H41 185.8 180.0
H51 C5 C4 H42 305.5 60.0
C6 C5 H52A H51 240.1 119.9
H52A C5 C4 H41 65.7 300.0
H52A C5 C4 H42 185.4 180.0
C7 C6 H61 H62 119.0 240.0
H61 C6 C5 H51 152.8 180.0
H61 C6 C5 H52A 272.9 60.0
C7 C6 H62 H61 240.6 120.0
H62 C6 C5 H51 31.8 300.0
H62 C6 C5 H52A 151.9 180.1
C8 C7 H71 H72 119.2 240.0
H71 C7 C6 H61 140.4 179.9
H71 C7 C6 H62 261.4 60.0
C8 C7 H72 H71 240.5 120.0
H72 C7 C6 H61 19.6 300.0
H72 C7 C6 H62 140.6 180.0
C9 C8 H81 H82 120.4 240.0
H81 C8 C9 H91 130.6 180.0
H81 C8 C9 H92 251.0 300.0
H81 C8 C7 H71 276.3 180.1
H81 C8 C7 H72 37.2 60.0
C9 C8 H82 H81 239.7 120.0
H82 C8 C9 H91 250.2 60.0
H82 C8 C9 H92 10.6 180.0
H82 C8 C7 H71 156.6 300.0
H82 C8 C7 H72 277.6 179.9
H91 C9 C8 H81 130.6 180.0
H91 C9 C8 H82 250.2 60.0
C8 C9 H91 H92 119.6 120.0
C10 C9 H91 H92 240.4 240.0
H92 C9 C8 H81 251.0 300.0
H92 C9 C8 H82 10.6 180.0
C8 C9 H92 H91 240.3 240.0
C10 C9 H92 H91 119.8 120.0
H101 C10 C9 H91 349.1 180.1
H101 C10 C9 H92 228.7 60.0
H102 C10 H101 H103 120.0 120.0
H102 C10 C9 H91 109.0 300.0
H102 C10 C9 H92 348.6 179.9
H101 C10 H102 H103 240.0 240.0
H103 C10 C9 H91 229.1 60.0
H103 C10 C9 H92 108.7 300.0
H101 C10 H103 H102 120.0 119.9