PDB Chemical Component DDQ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DDQ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 O1 1.210 1.463
N1 CM1 1.445 1.468
N1 CM2 1.435 1.469
N1 C1 1.464 1.469
CM1 HM11 1.115 1.090
CM1 HM12 1.115 1.090
CM1 HM13 1.116 1.091
CM2 HM21 1.115 1.091
CM2 HM22 1.114 1.089
CM2 HM23 1.115 1.090
C1 C2 1.538 1.530
C1 H11 1.115 1.091
C1 H12 1.115 1.089
C2 C3 1.558 1.530
C2 H21 1.115 1.090
C2 H22 1.116 1.089
C3 C4 1.522 1.530
C3 H31 1.114 1.090
C3 H32 1.115 1.091
C4 C5 1.514 1.529
C4 H41 1.116 1.090
C4 H42 1.115 1.090
C5 C6 1.553 1.531
C5 H51 1.115 1.091
C5 H52 1.116 1.089
C6 C7 1.526 1.531
C6 H61 1.115 1.090
C6 H62 1.115 1.089
C7 C8 1.541 1.530
C7 H71 1.115 1.089
C7 H72 1.115 1.090
C8 C9 1.512 1.530
C8 H81 1.115 1.090
C8 H82 1.115 1.090
C9 C10 1.521 1.530
C9 H91 1.115 1.091
C9 H92 1.115 1.089
C10 H101 1.115 1.089
C10 H102 1.115 1.090
C10 H103 1.116 1.091

Bond Angles for DDQ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1 N1 CM1 111.0 109.5
O1 N1 CM2 108.4 109.5
O1 N1 C1 115.8 109.5
CM1 N1 CM2 96.7 109.4
CM1 N1 C1 105.8 109.5
N1 CM1 HM11 110.9 109.5
N1 CM1 HM12 111.6 109.5
N1 CM1 HM13 111.6 109.4
CM2 N1 C1 117.4 109.5
N1 CM2 HM21 108.4 109.5
N1 CM2 HM22 112.6 109.5
N1 CM2 HM23 112.6 109.5
N1 C1 C2 113.2 109.4
N1 C1 H11 110.9 109.5
N1 C1 H12 110.9 109.5
HM11 CM1 HM12 111.7 109.5
HM11 CM1 HM13 111.7 109.4
HM12 CM1 HM13 98.8 109.4
HM21 CM2 HM22 112.6 109.4
HM21 CM2 HM23 112.6 109.4
HM22 CM2 HM23 97.9 109.5
C2 C1 H11 110.8 109.5
C2 C1 H12 110.8 109.5
C1 C2 C3 110.3 109.5
C1 C2 H21 111.9 109.5
C1 C2 H22 111.9 109.5
H11 C1 H12 99.5 109.5
C3 C2 H21 111.9 109.4
C3 C2 H22 111.9 109.4
C2 C3 C4 106.6 109.5
C2 C3 H31 113.3 109.5
C2 C3 H32 113.3 109.5
H21 C2 H22 98.5 109.5
C4 C3 H31 113.3 109.5
C4 C3 H32 113.2 109.4
C3 C4 C5 113.8 109.5
C3 C4 H41 110.6 109.5
C3 C4 H42 110.7 109.4
H31 C3 H32 97.2 109.4
C5 C4 H41 110.6 109.5
C5 C4 H42 110.6 109.5
C4 C5 C6 104.2 109.5
C4 C5 H51 114.2 109.5
C4 C5 H52 114.2 109.5
H41 C4 H42 99.7 109.5
C6 C5 H51 114.2 109.4
C6 C5 H52 114.2 109.5
C5 C6 C7 106.3 109.5
C5 C6 H61 113.4 109.4
C5 C6 H62 113.4 109.5
H51 C5 H52 96.2 109.5
C7 C6 H61 113.4 109.4
C7 C6 H62 113.4 109.5
C6 C7 C8 112.8 109.4
C6 C7 H71 111.0 109.5
C6 C7 H72 111.0 109.4
H61 C6 H62 97.2 109.5
C8 C7 H71 110.9 109.5
C8 C7 H72 110.9 109.5
C7 C8 C9 101.1 109.5
C7 C8 H81 115.4 109.5
C7 C8 H82 115.5 109.4
H71 C7 H72 99.3 109.5
C9 C8 H81 115.4 109.5
C9 C8 H82 115.4 109.5
C8 C9 C10 110.7 109.5
C8 C9 H91 111.8 109.5
C8 C9 H92 111.8 109.5
H81 C8 H82 95.0 109.5
C10 C9 H91 111.7 109.5
C10 C9 H92 111.7 109.5
C9 C10 H101 110.8 109.5
C9 C10 H102 111.8 109.5
C9 C10 H103 111.8 109.4
H91 C9 H92 98.7 109.5
H101 C10 H102 111.7 109.5
H101 C10 H103 111.7 109.5
H102 C10 H103 98.6 109.4

Torsion Angles for DDQ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CM1 N1 O1 CM2 255.0 120.0
CM1 N1 O1 C1 120.5 240.0
O1 N1 CM1 HM11 180.0 179.9
O1 N1 CM1 HM12 305.3 300.0
O1 N1 CM1 HM13 54.7 60.0
CM2 N1 O1 C1 225.6 120.0
O1 N1 CM2 HM21 180.0 300.0
O1 N1 CM2 HM22 305.3 60.0
O1 N1 CM2 HM23 54.8 180.0
O1 N1 C1 C2 281.8 300.0
O1 N1 C1 H11 47.0 180.0
O1 N1 C1 H12 156.6 60.0
O1 N1 CM1 CM2 112.7 240.0
O1 N1 CM1 C1 233.7 120.0
CM2 N1 CM1 C1 121.0 240.0
CM1 N1 CM2 HM21 294.7 180.0
CM1 N1 CM2 HM22 60.0 299.9
CM1 N1 CM2 HM23 169.5 60.0
CM1 N1 C1 C2 158.5 60.0
CM1 N1 C1 H11 283.7 300.0
CM1 N1 C1 H12 33.2 180.0
HM11 CM1 N1 HM12 234.7 239.9
HM11 CM1 N1 HM13 125.3 120.0
HM12 CM1 N1 HM13 250.5 240.1
O1 N1 CM2 CM1 245.2 120.0
O1 N1 CM2 C1 133.6 240.0
CM1 N1 CM2 C1 248.3 120.0
CM2 N1 CM1 HM11 67.3 300.0
CM2 N1 CM1 HM12 192.6 60.0
CM2 N1 CM1 HM13 302.1 180.0
CM2 N1 C1 C2 52.0 180.0
CM2 N1 C1 H11 177.2 60.0
CM2 N1 C1 H12 286.8 300.0
HM21 CM2 N1 HM22 234.7 240.0
HM21 CM2 N1 HM23 125.2 120.0
HM22 CM2 N1 HM23 250.5 239.9
O1 N1 C1 CM1 123.3 240.0
O1 N1 C1 CM2 229.8 120.0
CM1 N1 C1 CM2 106.5 240.0
C1 N1 CM1 HM11 306.3 59.9
C1 N1 CM1 HM12 71.6 180.0
C1 N1 CM1 HM13 181.1 300.0
C1 N1 CM2 HM21 46.4 60.0
C1 N1 CM2 HM22 171.7 180.0
C1 N1 CM2 HM23 281.2 300.0
C2 C1 N1 H11 234.8 120.0
C2 C1 N1 H12 125.2 240.0
N1 C1 C2 C3 212.6 180.0
N1 C1 C2 H21 337.9 60.1
N1 C1 C2 H22 87.3 300.0
H11 C1 N1 H12 250.4 120.0
HM11 CM1 N1 CM2 67.3 300.0
HM11 CM1 N1 C1 306.3 59.9
N1 CM1 HM11 HM12 125.2 120.1
N1 CM1 HM11 HM13 234.8 240.0
HM12 CM1 HM11 HM13 109.5 119.9
HM12 CM1 N1 CM2 192.6 60.0
HM12 CM1 N1 C1 71.6 180.0
N1 CM1 HM12 HM11 235.2 239.9
N1 CM1 HM12 HM13 117.5 120.0
HM11 CM1 HM12 HM13 242.4 240.1
HM13 CM1 N1 CM2 302.1 180.0
HM13 CM1 N1 C1 181.1 300.0
N1 CM1 HM13 HM11 124.8 120.0
N1 CM1 HM13 HM12 242.5 240.0
HM11 CM1 HM13 HM12 117.6 120.0
HM21 CM2 N1 C1 46.4 60.0
N1 CM2 HM21 HM22 125.3 120.0
N1 CM2 HM21 HM23 234.8 240.0
HM22 CM2 HM21 HM23 109.5 120.0
HM22 CM2 N1 C1 171.7 180.0
N1 CM2 HM22 HM21 237.1 240.0
N1 CM2 HM22 HM23 118.5 120.1
HM21 CM2 HM22 HM23 241.5 240.0
HM23 CM2 N1 C1 281.2 300.0
N1 CM2 HM23 HM21 122.9 120.0
N1 CM2 HM23 HM22 241.5 239.9
HM21 CM2 HM23 HM22 118.6 120.0
N1 C1 C2 H11 125.2 240.0
N1 C1 C2 H12 234.8 120.0
H11 C1 C2 H12 109.5 240.0
C3 C2 C1 H21 234.7 119.9
C3 C2 C1 H22 125.3 240.0
C1 C2 C3 C4 235.4 180.0
C1 C2 C3 H31 0.6 60.0
C1 C2 C3 H32 110.2 300.0
H21 C2 C1 H22 250.6 120.1
N1 C1 H11 C2 233.5 120.0
N1 C1 H11 H12 116.8 240.0
C2 C1 H11 H12 243.3 120.0
H11 C1 C2 C3 87.4 300.0
H11 C1 C2 H21 212.7 180.0
H11 C1 C2 H22 322.1 60.0
N1 C1 H12 C2 126.5 240.0
N1 C1 H12 H11 243.2 120.0
C2 C1 H12 H11 116.7 240.0
H12 C1 C2 C3 337.9 60.0
H12 C1 C2 H21 103.1 300.1
H12 C1 C2 H22 212.6 180.0
C3 C2 C1 H11 87.4 300.0
C3 C2 C1 H12 337.9 60.0
C1 C2 C3 H21 125.3 240.1
C1 C2 C3 H22 234.7 120.0
H21 C2 C3 H22 109.4 240.0
C4 C3 C2 H31 234.7 120.1
C4 C3 C2 H32 125.2 240.0
C2 C3 C4 C5 224.4 180.0
C2 C3 C4 H41 349.6 59.9
C2 C3 C4 H42 99.1 300.0
H31 C3 C2 H32 250.5 120.0
H21 C2 C1 H11 212.7 180.0
H21 C2 C1 H12 103.1 300.1
C1 C2 H21 C3 235.6 119.9
C1 C2 H21 H22 117.8 239.9
C3 C2 H21 H22 242.2 120.0
H21 C2 C3 C4 110.1 300.0
H21 C2 C3 H31 235.4 179.9
H21 C2 C3 H32 344.9 60.0
H22 C2 C1 H11 322.1 60.0
H22 C2 C1 H12 212.6 180.0
C1 C2 H22 C3 124.4 240.0
C1 C2 H22 H21 242.2 120.0
C3 C2 H22 H21 117.8 240.0
H22 C2 C3 C4 0.7 60.0
H22 C2 C3 H31 125.9 299.9
H22 C2 C3 H32 235.5 180.0
C4 C3 C2 H21 110.1 300.0
C4 C3 C2 H22 0.7 60.0
C2 C3 C4 H31 125.3 240.0
C2 C3 C4 H32 234.8 120.0
H31 C3 C4 H32 109.5 240.1
C5 C4 C3 H41 234.8 120.1
C5 C4 C3 H42 125.3 240.0
C3 C4 C5 C6 248.3 180.0
C3 C4 C5 H51 13.6 60.0
C3 C4 C5 H52 123.0 300.0
H41 C4 C3 H42 250.5 120.0
H31 C3 C2 H21 235.4 179.9
H31 C3 C2 H22 125.9 299.9
C2 C3 H31 C4 238.4 120.1
C2 C3 H31 H32 119.2 240.0
C4 C3 H31 H32 240.8 120.0
H31 C3 C4 C5 99.1 300.0
H31 C3 C4 H41 224.3 180.0
H31 C3 C4 H42 333.8 60.0
H32 C3 C2 H21 344.9 60.0
H32 C3 C2 H22 235.5 180.0
C2 C3 H32 C4 121.5 240.0
C2 C3 H32 H31 240.7 120.0
C4 C3 H32 H31 119.2 240.0
H32 C3 C4 C5 349.7 60.0
H32 C3 C4 H41 114.9 299.9
H32 C3 C4 H42 224.4 180.0
C5 C4 C3 H31 99.1 300.0
C5 C4 C3 H32 349.7 60.0
C3 C4 C5 H41 125.2 240.0
C3 C4 C5 H42 234.7 119.9
H41 C4 C5 H42 109.4 240.0
C6 C5 C4 H51 234.7 120.0
C6 C5 C4 H52 125.3 240.0
C4 C5 C6 C7 179.8 180.0
C4 C5 C6 H61 305.0 60.1
C4 C5 C6 H62 54.5 300.0
H51 C5 C4 H52 250.6 120.0
H41 C4 C3 H31 224.3 180.0
H41 C4 C3 H32 114.9 299.9
C3 C4 H41 C5 233.0 120.0
C3 C4 H41 H42 116.5 240.1
C5 C4 H41 H42 243.5 120.0
H41 C4 C5 C6 123.0 300.0
H41 C4 C5 H51 248.3 180.0
H41 C4 C5 H52 357.7 60.0
H42 C4 C3 H31 333.8 60.0
H42 C4 C3 H32 224.4 180.0
C3 C4 H42 C5 127.0 240.0
C3 C4 H42 H41 243.5 119.9
C5 C4 H42 H41 116.4 239.9
H42 C4 C5 C6 13.6 60.0
H42 C4 C5 H51 138.9 300.1
H42 C4 C5 H52 248.3 180.0
C6 C5 C4 H41 123.0 300.0
C6 C5 C4 H42 13.6 60.0
C4 C5 C6 H51 125.3 240.0
C4 C5 C6 H52 234.7 120.0
H51 C5 C6 H52 109.4 240.0
C7 C6 C5 H61 234.8 119.9
C7 C6 C5 H62 125.2 240.0
C5 C6 C7 C8 30.5 180.0
C5 C6 C7 H71 155.7 60.0
C5 C6 C7 H72 265.3 300.0
H61 C6 C5 H62 250.5 120.0
H51 C5 C4 H41 248.3 180.0
H51 C5 C4 H42 138.9 300.1
C4 C5 H51 C6 240.2 120.0
C4 C5 H51 H52 120.1 240.0
C6 C5 H51 H52 239.9 120.0
H51 C5 C6 C7 54.5 300.0
H51 C5 C6 H61 179.7 180.1
H51 C5 C6 H62 289.2 60.0
H52 C5 C4 H41 357.7 60.0
H52 C5 C4 H42 248.3 180.0
C4 C5 H52 C6 119.8 240.0
C4 C5 H52 H51 239.9 120.1
C6 C5 H52 H51 120.1 240.1
H52 C5 C6 C7 305.1 60.0
H52 C5 C6 H61 70.3 300.0
H52 C5 C6 H62 179.8 180.0
C7 C6 C5 H51 54.5 300.0
C7 C6 C5 H52 305.1 60.0
C5 C6 C7 H61 125.2 240.1
C5 C6 C7 H62 234.8 120.0
H61 C6 C7 H62 109.5 239.9
C8 C7 C6 H71 234.8 120.0
C8 C7 C6 H72 125.2 240.0
C6 C7 C8 C9 209.3 180.0
C6 C7 C8 H81 334.5 60.0
C6 C7 C8 H82 84.0 300.0
H71 C7 C6 H72 250.5 120.0
H61 C6 C5 H51 179.7 180.1
H61 C6 C5 H52 70.3 300.0
C5 C6 H61 C7 238.7 119.9
C5 C6 H61 H62 119.3 240.0
C7 C6 H61 H62 240.7 120.0
H61 C6 C7 C8 265.3 300.0
H61 C6 C7 H71 30.5 180.0
H61 C6 C7 H72 140.1 59.9
H62 C6 C5 H51 289.2 60.0
H62 C6 C5 H52 179.8 180.0
C5 C6 H62 C7 121.4 240.0
C5 C6 H62 H61 240.7 120.0
C7 C6 H62 H61 119.3 240.0
H62 C6 C7 C8 155.8 60.0
H62 C6 C7 H71 281.0 300.0
H62 C6 C7 H72 30.5 180.0
C8 C7 C6 H61 265.3 300.0
C8 C7 C6 H62 155.8 60.0
C6 C7 C8 H71 125.3 240.0
C6 C7 C8 H72 234.7 119.9
H71 C7 C8 H72 109.4 239.9
C9 C8 C7 H81 234.7 120.0
C9 C8 C7 H82 125.3 240.0
C7 C8 C9 C10 164.4 180.0
C7 C8 C9 H91 289.6 60.0
C7 C8 C9 H92 39.2 300.0
H81 C8 C7 H82 250.5 120.0
H71 C7 C6 H61 30.5 180.0
H71 C7 C6 H62 281.0 300.0
C6 C7 H71 C8 233.7 120.0
C6 C7 H71 H72 116.9 240.0
C8 C7 H71 H72 243.2 120.1
H71 C7 C8 C9 84.0 300.0
H71 C7 C8 H81 209.2 180.0
H71 C7 C8 H82 318.7 59.9
H72 C7 C6 H61 140.1 59.9
H72 C7 C6 H62 30.5 180.0
C6 C7 H72 C8 126.3 240.1
C6 C7 H72 H71 243.1 120.0
C8 C7 H72 H71 116.8 239.9
H72 C7 C8 C9 334.5 60.1
H72 C7 C8 H81 99.8 300.0
H72 C7 C8 H82 209.3 180.0
C9 C8 C7 H71 84.0 300.0
C9 C8 C7 H72 334.5 60.1
C7 C8 C9 H81 125.3 239.9
C7 C8 C9 H82 234.7 120.0
H81 C8 C9 H82 109.4 240.0
C10 C9 C8 H91 234.8 120.0
C10 C9 C8 H92 125.2 240.0
C8 C9 C10 H101 180.0 300.0
C8 C9 C10 H102 305.3 60.1
C8 C9 C10 H103 54.7 180.0
H91 C9 C8 H92 250.4 120.0
H81 C8 C7 H71 209.2 180.0
H81 C8 C7 H72 99.8 300.0
C7 C8 H81 C9 242.5 120.0
C7 C8 H81 H82 121.3 240.0
C9 C8 H81 H82 238.8 120.0
H81 C8 C9 C10 39.2 300.0
H81 C8 C9 H91 164.4 180.0
H81 C8 C9 H92 273.9 60.0
H82 C8 C7 H71 318.7 59.9
H82 C8 C7 H72 209.3 180.0
C7 C8 H82 C9 117.5 240.0
C7 C8 H82 H81 238.7 120.0
C9 C8 H82 H81 121.2 240.0
H82 C8 C9 C10 289.8 60.0
H82 C8 C9 H91 55.0 300.0
H82 C8 C9 H92 164.5 180.0
C10 C9 C8 H81 39.2 300.0
C10 C9 C8 H82 289.8 60.0
C8 C9 C10 H91 125.3 240.0
C8 C9 C10 H92 234.7 120.0
H91 C9 C10 H92 109.5 240.0
H101 C10 C9 H102 234.7 239.9
H101 C10 C9 H103 125.2 120.0
H102 C10 C9 H103 250.5 240.1
H91 C9 C8 H81 164.4 180.0
H91 C9 C8 H82 55.0 300.0
C8 C9 H91 C10 235.3 120.0
C8 C9 H91 H92 117.7 240.0
C10 C9 H91 H92 242.4 120.0
H91 C9 C10 H101 54.7 60.0
H91 C9 C10 H102 180.0 180.0
H91 C9 C10 H103 289.5 300.0
H92 C9 C8 H81 273.9 60.0
H92 C9 C8 H82 164.5 180.0
C8 C9 H92 C10 124.7 240.0
C8 C9 H92 H91 242.3 120.0
C10 C9 H92 H91 117.6 240.0
H92 C9 C10 H101 305.3 180.0
H92 C9 C10 H102 70.5 300.1
H92 C9 C10 H103 180.0 60.0
H101 C10 C9 H91 54.7 60.0
H101 C10 C9 H92 305.3 180.0
C9 C10 H101 H102 125.3 120.0
C9 C10 H101 H103 234.7 240.0
H102 C10 H101 H103 109.4 120.0
H102 C10 C9 H91 180.0 180.0
H102 C10 C9 H92 70.5 300.1
C9 C10 H102 H101 235.2 240.0
C9 C10 H102 H103 117.7 119.9
H101 C10 H102 H103 242.4 240.0
H103 C10 C9 H91 289.5 300.0
H103 C10 C9 H92 180.0 60.0
C9 C10 H103 H101 124.7 120.0
C9 C10 H103 H102 242.3 240.1
H101 C10 H103 H102 117.6 120.0