PDB Chemical Component DDL

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DDL

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.539	1.530
C1	O1	1.431	1.429
C1	O5	1.433	1.425
C1	H1	1.099	1.090
C2	C3	1.564	1.532
C2	H2	1.098	1.089
C2	H22	1.099	1.091
C3	C4	1.529	1.532
C3	O3	1.441	1.429
C3	H3	1.098	1.090
C4	C5	1.518	1.530
C4	O4	1.414	1.428
C4	H4	1.100	1.089
C5	C6	1.549	1.530
C5	O5	1.431	1.426
C5	H5	1.099	1.089
C6	H61	1.099	1.090
C6	H62	1.099	1.090
C6	H63	1.100	1.089
O1	HO1	0.950	0.966
O3	HO3	0.950	0.967
O4	HO4	0.960	0.967

Bond Angles for DDL

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	107.2	109.4
C2	C1	O5	109.8	109.8
C2	C1	H1	110.9	109.4
C1	C2	C3	108.4	109.0
C1	C2	H2	105.7	109.6
C1	C2	H22	107.1	109.5
O1	C1	O5	110.4	109.5
O1	C1	H1	109.6	109.4
C1	O1	HO1	107.2	106.8
O5	C1	H1	108.8	109.4
C1	O5	C5	116.4	107.6
C3	C2	H2	110.3	109.6
C3	C2	H22	110.0	109.5
C2	C3	C4	108.0	108.7
C2	C3	O3	111.6	109.6
C2	C3	H3	113.6	109.6
H2	C2	H22	114.9	109.5
C4	C3	O3	109.1	109.7
C4	C3	H3	106.6	109.7
C3	C4	C5	111.3	109.0
C3	C4	O4	111.0	109.5
C3	C4	H4	107.7	109.6
O3	C3	H3	107.8	109.6
C3	O3	HO3	111.5	106.8
C5	C4	O4	110.4	109.7
C5	C4	H4	105.7	109.5
C4	C5	C6	113.6	109.4
C4	C5	O5	109.8	109.8
C4	C5	H5	104.9	109.4
O4	C4	H4	110.6	109.5
C4	O4	HO4	109.3	106.8
C6	C5	O5	108.5	109.4
C6	C5	H5	110.7	109.4
C5	C6	H61	111.1	109.6
C5	C6	H62	112.2	109.4
C5	C6	H63	110.0	109.5
O5	C5	H5	109.2	109.4
H61	C6	H62	108.4	109.4
H61	C6	H63	107.2	109.4
H62	C6	H63	107.6	109.5

Torsion Angles for DDL

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	O5	120.0	120.1
O1	C1	C2	H1	240.3	240.2
C2	C1	O1	HO1	179.9	179.6
O5	C1	C2	H1	120.3	120.1
C2	C1	O5	C5	301.5	292.5
C3	C2	C1	H2	118.3	240.0
C3	C2	C1	H22	241.3	119.8
C1	C2	C3	C4	302.2	306.3
C1	C2	C3	O3	182.3	186.4
C1	C2	C3	H3	60.3	66.1
H2	C2	C1	H22	123.0	239.8
C2	C1	O1	O5	240.4	239.6
C2	C1	O1	H1	120.5	119.7
O1	C1	C2	C3	177.2	181.3
O1	C1	C2	H2	58.9	301.3
O1	C1	C2	H22	295.9	61.5
O5	C1	O1	H1	240.1	240.1
O1	C1	O5	C5	183.5	172.4
C2	C1	O5	O1	118.0	120.1
C2	C1	O5	H1	238.4	239.9
O5	C1	C2	C3	57.2	61.1
O5	C1	C2	H2	298.9	181.1
O5	C1	C2	H22	175.9	301.4
O1	C1	O5	H1	120.4	119.8
O5	C1	O1	HO1	299.5	300.0
C4	C5	O5	C1	56.5	67.6
C6	C5	O5	C1	181.1	187.7
C1	O5	C5	H5	301.9	307.5
C2	C1	H1	O1	241.8	240.2
C2	C1	H1	O5	120.9	120.4
H1	C1	C2	C3	296.9	301.1
H1	C1	C2	H2	178.6	61.1
H1	C1	C2	H22	55.6	181.3
O1	C1	H1	O5	239.1	240.1
H1	C1	O1	HO1	59.4	59.9
H1	C1	O5	C5	63.1	52.5
C3	C2	C1	O1	177.2	181.3
C3	C2	C1	O5	57.2	61.1
C3	C2	C1	H1	296.9	301.1
C1	C2	C3	H2	244.7	120.0
C1	C2	C3	H22	116.9	240.2
H2	C2	C3	H22	232.2	120.2
C4	C3	C2	O3	119.9	119.9
C4	C3	C2	H3	242.0	240.2
C2	C3	C4	C5	57.5	53.8
C2	C3	C4	O4	294.1	293.7
C2	C3	C4	H4	172.9	173.6
O3	C3	C2	H3	122.1	120.3
C2	C3	O3	HO3	180.0	300.1
H2	C2	C1	O1	58.9	301.3
H2	C2	C1	O5	298.9	181.1
H2	C2	C1	H1	178.6	61.1
C1	C2	H2	C3	117.0	240.4
C1	C2	H2	H22	242.1	120.2
C3	C2	H2	H22	125.1	239.9
H2	C2	C3	C4	57.5	186.3
H2	C2	C3	O3	297.6	66.4
H2	C2	C3	H3	175.6	306.1
H22	C2	C1	O1	295.9	61.5
H22	C2	C1	O5	175.9	301.4
H22	C2	C1	H1	55.6	181.3
C1	C2	H22	C3	242.4	119.5
C1	C2	H22	H2	117.1	239.7
C3	C2	H22	H2	234.7	120.2
H22	C2	C3	C4	185.4	66.1
H22	C2	C3	O3	65.5	306.2
H22	C2	C3	H3	303.4	185.9
C4	C3	C2	H2	57.5	186.3
C4	C3	C2	H22	185.4	66.1
C2	C3	C4	O3	238.6	240.1
C2	C3	C4	H3	122.5	119.7
O3	C3	C4	H3	243.9	239.6
C4	C3	O3	HO3	60.8	180.8
C5	C4	C3	O4	123.4	120.1
C5	C4	C3	H4	244.6	240.2
C3	C4	C5	C6	183.2	178.6
C3	C4	C5	O5	304.9	298.7
C3	C4	C5	H5	62.1	58.7
O4	C4	C3	H4	121.1	120.2
C3	C4	O4	HO4	60.6	300.0
O3	C3	C2	H2	297.6	66.4
O3	C3	C2	H22	65.5	306.2
C2	C3	O3	C4	119.2	119.3
C2	C3	O3	H3	234.6	239.7
C4	C3	O3	H3	115.4	120.5
O3	C3	C4	C5	178.9	173.7
O3	C3	C4	O4	55.5	53.6
O3	C3	C4	H4	294.3	293.4
H3	C3	C2	H2	175.6	306.1
H3	C3	C2	H22	303.4	185.9
C2	C3	H3	C4	241.2	240.8
C2	C3	H3	O3	124.1	120.3
C4	C3	H3	O3	243.0	239.5
H3	C3	C4	C5	295.1	294.1
H3	C3	C4	O4	171.6	174.0
H3	C3	C4	H4	50.5	53.8
H3	C3	O3	HO3	305.4	60.3
C1	O5	C5	C4	56.5	67.6
C5	C4	C3	O3	178.9	173.7
C5	C4	C3	H3	295.1	294.1
C3	C4	C5	O4	236.2	240.1
C3	C4	C5	H4	116.6	119.8
O4	C4	C5	H4	240.4	239.7
C5	C4	O4	HO4	296.7	180.4
C6	C5	C4	O5	238.3	240.0
C6	C5	C4	H5	121.1	119.9
C4	C5	C6	H61	181.5	180.1
C4	C5	C6	H62	303.1	300.1
C4	C5	C6	H63	62.9	60.1
O5	C5	C4	H5	242.7	240.0
O4	C4	C3	O3	55.5	53.6
O4	C4	C3	H3	171.6	174.0
C3	C4	O4	C5	123.9	119.6
C3	C4	O4	H4	240.6	239.8
C5	C4	O4	H4	116.6	120.2
O4	C4	C5	C6	307.0	298.6
O4	C4	C5	O5	68.6	58.6
O4	C4	C5	H5	185.9	178.7
H4	C4	C3	O3	294.3	293.4
H4	C4	C3	H3	50.5	53.8
C3	C4	H4	C5	241.0	240.6
C3	C4	H4	O4	121.4	120.2
C5	C4	H4	O4	240.5	239.6
H4	C4	C5	C6	66.6	58.8
H4	C4	C5	O5	188.2	178.9
H4	C4	C5	H5	305.5	298.9
H4	C4	O4	HO4	180.1	60.2
C1	O5	C5	C6	181.1	187.7
C6	C5	C4	O4	307.0	298.6
C6	C5	C4	H4	66.6	58.8
C4	C5	C6	O5	122.4	120.3
C4	C5	C6	H5	242.3	240.1
O5	C5	C6	H5	119.9	119.8
H61	C6	C5	H62	238.5	240.0
H61	C6	C5	H63	118.6	120.1
H62	C6	C5	H63	240.2	240.0
C5	O5	C1	H1	63.1	52.5
O5	C5	C4	O4	68.6	58.6
O5	C5	C4	H4	188.2	178.9
C4	C5	O5	C6	235.3	239.9
C4	C5	O5	H5	114.5	120.1
C6	C5	O5	H5	239.2	240.2
O5	C5	C6	H61	59.1	59.9
O5	C5	C6	H62	180.7	179.8
O5	C5	C6	H63	300.5	299.8
H5	C5	C4	O4	185.9	178.7
H5	C5	C4	H4	305.5	298.9
C4	C5	H5	C6	122.9	119.9
C4	C5	H5	O5	242.3	239.7
C6	C5	H5	O5	119.4	119.8
H5	C5	C6	H61	299.3	300.1
H5	C5	C6	H62	60.8	60.0
H5	C5	C6	H63	180.6	180.0
H61	C6	C5	O5	59.1	59.9
H61	C6	C5	H5	299.3	300.1
C5	C6	H61	H62	123.7	120.0
C5	C6	H61	H63	239.7	239.9
H62	C6	H61	H63	115.9	119.9
H62	C6	C5	O5	180.7	179.8
H62	C6	C5	H5	60.8	60.0
C5	C6	H62	H61	236.9	240.0
C5	C6	H62	H63	121.2	120.0
H61	C6	H62	H63	244.3	240.1
H63	C6	C5	O5	300.5	299.8
H63	C6	C5	H5	180.6	180.0
C5	C6	H63	H61	121.0	120.1
C5	C6	H63	H62	237.4	240.0
H61	C6	H63	H62	116.4	119.9
HO1	O1	C1	O5	299.5	300.0
HO1	O1	C1	H1	59.4	59.9
HO3	O3	C3	H3	305.4	60.3
HO4	O4	C4	H4	180.1	60.2