PDB Chemical Component DDG

Ideal Model

Chemical Description

Name 2',3'-DIDEOXY-GUANOSINE-5'-MONOPHOSPHATE
Formula C10 H14 N5 O6 P
Formal charge 0
Molecular weight 331.222 g/mol
Component type DNA LINKING
Nonstandard Parent Id DG

Chemical features

Atom count 36
Chiral atom count 2
Chiral atoms C4' C1'
Observed leaving atoms OP3
Bond count 38
Aromatic bond count 5

Chemical Identifiers

Systematic name (ACDLabs) [(2S,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)tetrahydrofuran-2-yl]methyl dihydrogen phosphate
Systematic name (OpenEye OEToolkits) [(2S,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=Nc2n(cnc2C(=O)N1)[C@H]3CC[C@@H](CO[P](O)(O)=O)O3
SMILES (CACTVS) NC1=Nc2n(cnc2C(=O)N1)[CH]3CC[CH](CO[P](O)(O)=O)O3
Stereo SMILES (OpenEye) c1nc2c(n1[C@H]3CC[C@H](O3)COP(=O)(O)O)N=C(NC2=O)N
InChI descriptor InChI=1S/C10H14N5O6P/c11-10-13-8-7(9(16)14-10)12-4-15(8)6-2-1-5(21-6)3-20-22(17,18)19/h4-6H,1-3H2,(H2,17,18,19)(H3,11,13,14,16)/t5-,6+/m0/s1
InChIKey descriptor SDMRBYKCQICSIT-NTSWFWBYSA-N

Status Information

Last modified 2011-06-04
Created 1999-07-08
Release status REL
Model PDB code 1QSS
Processing site RCSB