PDB Chemical Component DDF

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DDF

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.299 1.361
N1 C8A 1.374 1.372
N1 HN1 1.020 0.970
C2 NA2 1.235 1.370
C2 N3 1.442 1.316
NA2 HN21 1.019 0.970
NA2 HN22 1.020 0.969
N3 C4 1.330 1.342
C4 O4 1.250 1.222
C4 C4A 1.409 1.412
C4A C5 1.539 1.504
C4A C8A 1.298 1.360
C5 C6 1.433 1.528
C5 H51 1.116 1.090
C5 H52 1.115 1.089
C6 C7 1.461 1.534
C6 C9 1.526 1.530
C6 H6 1.116 1.090
C7 N8 1.428 1.470
C7 H71 1.115 1.090
C7 H72 1.115 1.090
N8 C8A 1.426 1.376
N8 HN8 1.019 0.970
C9 C10 1.481 1.529
C9 H91 1.115 1.089
C9 H92 1.115 1.091
C10 C14 1.561 1.507
C10 H101 1.116 1.090
C10 H102 1.115 1.089
C11 C12 1.377 1.395
C11 C16 1.384 1.394
C11 C 1.537 1.479
C12 C13 1.436 1.379
C12 H12 1.103 1.080
C13 C14 1.455 1.383
C13 H13 1.103 1.080
C14 C15 1.405 1.382
C15 C16 1.448 1.379
C15 H15 1.104 1.080
C16 H16 1.103 1.081
C O 1.302 1.216
C N 1.372 1.348
N CA 1.361 1.465
N HN 1.020 0.969
CA CB 1.439 1.530
CA CT 1.313 1.507
CA HA 1.115 1.090
CB CG 1.452 1.529
CB HB1 1.115 1.090
CB HB2 1.115 1.090
CG CD 1.351 1.506
CG HG1 1.115 1.089
CG HG2 1.116 1.090
CD OE1 1.375 1.209
CD OE2 1.340 1.343
OE2 HOE2 0.950 0.967
CT O1 1.274 1.208
CT O2 1.282 1.342
O2 HO2 0.950 0.967

Bond Angles for DDF

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C8A 120.8 120.2
C2 N1 HN1 108.2 119.9
N1 C2 NA2 125.5 119.5
N1 C2 N3 119.2 121.1
C8A N1 HN1 108.1 119.9
N1 C8A C4A 121.4 119.2
N1 C8A N8 114.2 119.4
NA2 C2 N3 115.4 119.4
C2 NA2 HN21 125.5 120.0
C2 NA2 HN22 106.5 120.0
C2 N3 C4 119.4 120.9
HN21 NA2 HN22 106.7 120.0
N3 C4 O4 118.9 120.1
N3 C4 C4A 118.8 119.8
O4 C4 C4A 122.4 120.1
C4 C4A C5 116.6 119.3
C4 C4A C8A 120.4 118.7
C5 C4A C8A 122.8 121.9
C4A C5 C6 110.9 110.4
C4A C5 H51 111.7 109.3
C4A C5 H52 111.7 109.3
C4A C8A N8 123.8 121.4
C6 C5 H51 111.6 109.3
C6 C5 H52 111.7 109.4
C5 C6 C7 111.2 108.6
C5 C6 C9 107.6 109.8
C5 C6 H6 110.5 109.6
H51 C5 H52 98.7 109.1
C7 C6 C9 111.8 109.6
C7 C6 H6 106.1 109.6
C6 C7 N8 120.8 107.8
C6 C7 H71 108.2 109.8
C6 C7 H72 108.2 109.8
C9 C6 H6 109.8 109.5
C6 C9 C10 108.4 109.5
C6 C9 H91 112.6 109.5
C6 C9 H92 112.6 109.4
N8 C7 H71 108.2 109.8
N8 C7 H72 108.2 109.8
C7 N8 C8A 112.0 119.2
C7 N8 HN8 111.3 120.4
H71 C7 H72 101.7 109.9
C8A N8 HN8 111.3 120.4
C10 C9 H91 112.6 109.5
C10 C9 H92 112.6 109.4
C9 C10 C14 108.6 109.5
C9 C10 H101 112.5 109.5
C9 C10 H102 112.5 109.4
H91 C9 H92 97.9 109.4
C14 C10 H101 112.5 109.5
C14 C10 H102 112.6 109.5
C10 C14 C13 119.1 119.8
C10 C14 C15 125.4 119.9
H101 C10 H102 97.9 109.5
C12 C11 C16 116.4 119.7
C12 C11 C 123.0 120.1
C11 C12 C13 122.4 119.9
C11 C12 H12 116.6 120.1
C16 C11 C 120.6 120.1
C11 C16 C15 124.1 119.9
C11 C16 H16 115.5 120.1
C11 C O 120.1 120.0
C11 C N 114.8 120.0
C13 C12 H12 121.0 120.0
C12 C13 C14 121.3 120.1
C12 C13 H13 118.7 119.9
C14 C13 H13 120.0 120.0
C13 C14 C15 115.5 120.3
C14 C15 C16 120.3 120.1
C14 C15 H15 118.4 120.0
C16 C15 H15 121.4 119.9
C15 C16 H16 120.4 120.1
O C N 124.8 120.0
C N CA 131.6 120.0
C N HN 114.7 120.0
CA N HN 113.7 120.0
N CA CB 112.5 109.4
N CA CT 107.1 109.5
N CA HA 108.9 109.4
CB CA CT 109.3 109.5
CB CA HA 106.9 109.4
CA CB CG 106.5 109.5
CA CB HB1 113.3 109.4
CA CB HB2 113.3 109.4
CT CA HA 112.2 109.5
CA CT O1 120.7 120.0
CA CT O2 112.3 120.0
CG CB HB1 113.3 109.5
CG CB HB2 113.4 109.5
CB CG CD 101.4 109.5
CB CG HG1 115.3 109.5
CB CG HG2 115.2 109.5
HB1 CB HB2 97.2 109.4
CD CG HG1 115.3 109.5
CD CG HG2 115.3 109.4
CG CD OE1 108.0 120.0
CG CD OE2 121.5 120.0
HG1 CG HG2 95.2 109.5
OE1 CD OE2 130.5 119.9
CD OE2 HOE2 121.5 120.0
O1 CT O2 126.8 120.0
CT O2 HO2 112.3 120.0

Torsion Angles for DDF

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C8A N1 C2 HN1 125.3 179.5
C2 N1 C8A C4A 0.2 0.7
C2 N1 C8A N8 172.2 180.5
NA2 C2 N1 N3 179.1 180.2
N1 C2 NA2 HN21 180.0 179.8
N1 C2 NA2 HN22 54.7 359.4
N1 C2 N3 C4 0.2 0.1
C2 N1 C8A HN1 234.7 180.5
C8A N1 C2 NA2 179.4 179.8
C8A N1 C2 N3 0.2 359.6
C4 C4A C8A N1 358.9 359.3
C5 C4A C8A N1 173.4 179.0
C4A C8A N1 N8 188.0 180.2
C7 N8 C8A N1 182.0 194.2
N1 C8A N8 HN8 307.2 14.2
C2 N1 HN1 C8A 132.5 179.5
HN1 N1 C2 NA2 54.1 0.3
HN1 N1 C2 N3 235.0 180.0
HN1 N1 C8A C4A 125.5 180.3
HN1 N1 C8A N8 297.5 0.1
NA2 C2 N1 C8A 179.4 179.8
NA2 C2 N1 HN1 54.1 0.3
N1 C2 NA2 N3 180.8 179.8
NA2 C2 N3 C4 181.0 179.9
HN21 NA2 C2 HN22 125.3 180.4
N3 C2 N1 C8A 0.2 359.6
N3 C2 N1 HN1 235.0 180.0
N1 C2 N3 NA2 179.2 180.2
N3 C2 NA2 HN21 359.2 360.0
N3 C2 NA2 HN22 233.9 179.6
C2 N3 C4 O4 178.9 180.0
C2 N3 C4 C4A 358.9 359.9
HN21 NA2 C2 N3 359.2 360.0
C2 NA2 HN21 HN22 234.7 179.6
HN22 NA2 C2 N3 233.9 179.6
C2 NA2 HN22 HN21 136.1 180.4
O4 C4 N3 C4A 180.0 180.1
N3 C4 C4A C5 186.7 180.7
N3 C4 C4A C8A 1.5 0.4
N3 C4 O4 C4A 180.0 179.9
O4 C4 C4A C5 6.8 0.6
O4 C4 C4A C8A 181.5 180.3
N1 C8A C4A C4 358.9 359.3
N3 C4 C4A O4 180.0 180.1
C5 C4A C4 C8A 185.2 180.2
C4 C4A C5 C6 153.6 200.1
C4 C4A C5 H51 278.9 320.3
C4 C4A C5 H52 28.4 79.7
C4 C4A C8A N8 187.7 179.5
N1 C8A C4A C5 173.4 179.0
C4 C4A C5 C8A 174.6 179.8
C5 C4A C8A N8 2.2 359.2
C6 C5 C4A H51 234.8 239.7
C6 C5 C4A H52 125.3 120.4
C4A C5 C6 C7 41.4 309.8
C4A C5 C6 C9 278.7 189.9
C4A C5 C6 H6 158.9 69.6
H51 C5 C4A H52 250.5 240.6
C4A C8A N1 HN1 125.5 180.3
N1 C8A C4A N8 171.2 179.8
C4 C4A C8A C5 185.6 180.2
C8A C4A C5 C6 339.0 20.3
C8A C4A C5 H51 104.2 140.6
C8A C4A C5 H52 213.7 259.9
C7 N8 C8A C4A 353.7 14.0
C4A C8A N8 HN8 119.0 194.0
C6 C5 C4A C8A 339.0 20.3
C4A C5 C6 H51 125.3 120.2
C4A C5 C6 H52 234.7 239.7
H51 C5 C6 H52 109.4 119.4
C7 C6 C5 C9 122.7 119.9
C7 C6 C5 H6 242.5 240.3
C5 C6 C7 N8 308.7 62.0
C5 C6 C7 H71 74.0 302.4
C5 C6 C7 H72 183.4 181.6
C9 C6 C5 H6 119.8 120.4
C5 C6 C9 C10 293.6 179.2
C5 C6 C9 H91 58.9 299.3
C5 C6 C9 H92 168.4 59.3
H51 C5 C4A C8A 104.2 140.6
C4A C5 H51 C6 235.2 239.0
C4A C5 H51 H52 117.6 119.5
C6 C5 H51 H52 242.4 240.4
H51 C5 C6 C7 276.2 189.6
H51 C5 C6 C9 153.5 69.7
H51 C5 C6 H6 33.6 309.3
H52 C5 C4A C8A 213.7 259.9
C4A C5 H52 C6 124.8 121.0
C4A C5 H52 H51 242.4 240.6
C6 C5 H52 H51 117.5 119.5
H52 C5 C6 C7 166.7 70.2
H52 C5 C6 C9 44.0 310.3
H52 C5 C6 H6 284.2 189.9
C7 C6 C5 H51 276.2 189.6
C7 C6 C5 H52 166.7 70.2
C5 C6 C7 C9 239.8 240.0
C5 C6 C7 H6 120.1 119.8
C9 C6 C7 H6 240.3 239.7
C7 C6 C9 C10 171.3 59.9
C7 C6 C9 H91 296.6 180.0
C7 C6 C9 H92 46.1 300.0
N8 C7 C6 H71 234.7 119.5
N8 C7 C6 H72 125.3 240.4
C6 C7 N8 C8A 31.5 315.4
C6 C7 N8 HN8 266.2 135.4
H71 C7 C6 H72 250.6 120.9
C9 C6 C5 H51 153.5 69.7
C9 C6 C5 H52 44.0 310.3
C5 C6 C9 C7 122.3 119.3
C5 C6 C9 H6 239.7 239.6
C7 C6 C9 H6 117.4 120.3
C9 C6 C7 N8 68.9 182.0
C9 C6 C7 H71 194.2 62.4
C9 C6 C7 H72 303.6 301.6
C10 C9 C6 H91 234.7 239.9
C10 C9 C6 H92 125.2 119.9
C6 C9 C10 C14 158.4 180.1
C6 C9 C10 H101 283.6 300.1
C6 C9 C10 H102 33.1 60.1
H91 C9 C6 H92 250.5 240.1
H6 C6 C5 H51 33.6 309.3
H6 C6 C5 H52 284.2 189.9
C5 C6 H6 C7 239.4 240.8
C5 C6 H6 C9 118.5 120.5
C7 C6 H6 C9 239.0 239.7
H6 C6 C7 N8 188.6 302.2
H6 C6 C7 H71 313.9 182.7
H6 C6 C7 H72 63.3 61.8
H6 C6 C9 C10 53.9 299.6
H6 C6 C9 H91 179.2 59.7
H6 C6 C9 H92 288.7 179.7
N1 C8A N8 C7 182.0 194.2
C4A C8A N8 C7 353.7 14.0
N8 C7 C6 C9 68.9 182.0
N8 C7 C6 H6 188.6 302.2
C6 C7 N8 H71 125.3 240.5
C6 C7 N8 H72 234.7 119.6
H71 C7 N8 H72 109.4 239.1
C8A N8 C7 HN8 125.3 180.0
H71 C7 C6 C9 194.2 62.4
H71 C7 C6 H6 313.9 182.7
C6 C7 H71 N8 227.6 118.3
C6 C7 H71 H72 113.8 239.1
N8 C7 H71 H72 246.2 120.9
H71 C7 N8 C8A 266.2 74.9
H71 C7 N8 HN8 140.9 254.9
H72 C7 C6 C9 303.6 301.6
H72 C7 C6 H6 63.3 61.8
C6 C7 H72 N8 132.4 241.7
C6 C7 H72 H71 246.2 120.8
N8 C7 H72 H71 113.8 239.2
H72 C7 N8 C8A 156.8 195.8
H72 C7 N8 HN8 31.5 15.8
N8 C8A N1 HN1 297.5 0.1
N1 C8A N8 C4A 188.2 180.2
C8A N8 C7 H71 266.2 74.9
C8A N8 C7 H72 156.8 195.8
C7 N8 C8A HN8 234.7 180.0
HN8 N8 C7 H71 140.9 254.9
HN8 N8 C7 H72 31.5 15.8
C7 N8 HN8 C8A 125.7 180.0
C10 C9 C6 H6 53.9 299.6
C6 C9 C10 H91 125.3 120.1
C6 C9 C10 H92 234.8 240.1
H91 C9 C10 H92 109.5 119.9
C14 C10 C9 H101 234.8 240.0
C14 C10 C9 H102 125.3 120.0
C9 C10 C14 C13 198.2 90.0
C9 C10 C14 C15 16.8 269.8
H101 C10 C9 H102 250.5 240.0
H91 C9 C6 H6 179.2 59.7
C6 C9 H91 C10 237.0 239.9
C6 C9 H91 H92 118.5 119.9
C10 C9 H91 H92 241.5 240.1
H91 C9 C10 C14 33.1 59.9
H91 C9 C10 H101 158.4 179.9
H91 C9 C10 H102 267.8 299.9
H92 C9 C6 H6 288.7 179.7
C6 C9 H92 C10 122.9 120.0
C6 C9 H92 H91 241.5 240.0
C10 C9 H92 H91 118.6 120.0
H92 C9 C10 C14 283.6 300.0
H92 C9 C10 H101 48.8 60.0
H92 C9 C10 H102 158.3 180.0
C14 C10 C9 H91 33.1 59.9
C14 C10 C9 H92 283.6 300.0
C9 C10 C14 H101 125.2 120.0
C9 C10 C14 H102 234.7 240.0
H101 C10 C14 H102 109.5 120.0
C12 C13 C14 C10 178.4 180.0
C10 C14 C13 H13 358.4 360.0
C13 C14 C10 C15 181.4 180.2
C10 C14 C15 C16 181.2 179.7
C10 C14 C15 H15 1.3 0.2
H101 C10 C9 H91 158.4 179.9
H101 C10 C9 H92 48.8 60.0
C9 C10 H101 C14 237.0 240.0
C9 C10 H101 H102 118.5 119.9
C14 C10 H101 H102 241.5 240.0
H101 C10 C14 C13 72.9 330.0
H101 C10 C14 C15 251.6 149.8
H102 C10 C9 H91 267.8 299.9
H102 C10 C9 H92 158.3 180.0
C9 C10 H102 C14 123.1 120.0
C9 C10 H102 H101 241.5 240.0
C14 C10 H102 H101 118.5 120.0
H102 C10 C14 C13 323.5 210.0
H102 C10 C14 C15 142.1 29.7
C16 C11 C12 C 181.1 180.1
C12 C11 C16 C15 359.9 359.7
C12 C11 C16 H16 179.9 180.0
C12 C11 C O 343.0 0.1
C12 C11 C N 169.3 180.0
C13 C12 C11 H12 180.0 179.9
C11 C12 C13 C14 0.7 0.1
C11 C12 C13 H13 180.7 180.0
C12 C11 C16 C 178.9 179.9
C16 C11 C12 C13 359.6 0.0
C16 C11 C12 H12 179.6 180.1
C16 C11 C O 161.8 180.0
C16 C11 C N 348.1 359.9
C14 C15 C16 C11 0.3 0.6
C11 C16 C15 H15 180.3 180.1
C15 C16 C11 H16 180.0 179.7
C12 C11 C C16 181.2 180.1
C C11 C12 C13 178.4 179.9
C C11 C12 H12 358.4 360.0
C C11 C16 C15 181.0 179.8
C C11 C16 H16 1.0 0.1
O C C11 N 173.7 180.1
C11 C N CA 189.8 180.0
C11 C N HN 9.9 0.0
C10 C14 C13 C12 178.4 180.0
C13 C12 C11 C16 359.6 0.0
C13 C12 C11 C 178.4 179.9
C11 C12 C13 H12 180.0 180.1
C14 C13 C12 H13 180.0 180.0
C12 C13 C14 C15 359.6 0.2
H12 C12 C11 C16 179.6 180.1
H12 C12 C11 C 358.4 360.0
C11 C12 H12 C13 180.0 179.9
H12 C12 C13 C14 180.7 180.0
H12 C12 C13 H13 0.7 360.0
C13 C14 C10 H101 72.9 330.0
C13 C14 C10 H102 323.5 210.0
C10 C14 C13 C15 178.8 179.8
C14 C13 C12 H12 180.7 180.0
C12 C13 C14 H13 180.0 180.0
C13 C14 C15 C16 359.9 359.5
C13 C14 C15 H15 179.9 180.0
H13 C13 C12 H12 0.7 360.0
C12 C13 H13 C14 180.0 180.0
H13 C13 C14 C15 179.6 180.2
C15 C14 C10 H101 251.6 149.8
C15 C14 C10 H102 142.1 29.7
C10 C14 C15 C13 181.3 180.2
C11 C16 C15 C14 0.3 0.6
C15 C14 C13 H13 179.6 180.2
C16 C15 C14 H15 180.0 179.5
C14 C15 C16 H16 180.4 180.2
C15 C16 C11 C 181.0 179.8
C11 C16 C15 H16 180.0 180.3
C14 C15 C16 H15 180.0 180.5
C14 C15 H15 C16 180.0 179.5
H15 C15 C16 H16 0.3 359.7
H16 C16 C11 C 1.0 0.1
C11 C16 H16 C15 180.0 179.6
H16 C16 C15 H15 0.3 359.7
C11 C O N 187.0 179.9
O C N CA 16.5 359.9
O C N HN 196.5 179.9
C11 C N O 173.4 180.1
CA N C HN 180.0 180.0
C N CA CB 71.3 150.0
C N CA CT 191.4 270.1
C N CA HA 313.0 30.1
C N CA HN 180.0 180.0
CB CA N CT 239.9 239.9
CB CA N HA 118.3 119.9
N CA CB CG 250.3 300.0
N CA CB HB1 15.5 60.1
N CA CB HB2 125.0 180.0
CT CA N HA 238.4 240.0
N CA CT O1 326.7 150.0
N CA CT O2 142.0 330.0
C N HN CA 180.0 180.0
HN N CA CB 251.3 330.0
HN N CA CT 11.4 90.0
HN N CA HA 133.0 210.0
CB CA N HN 251.3 330.0
N CA CB CT 118.9 120.1
N CA CB HA 240.5 240.1
CT CA CB HA 121.6 120.0
CB CA CT O1 88.8 270.1
CB CA CT O2 264.1 90.0
CG CB CA HB1 234.8 239.9
CG CB CA HB2 125.3 120.0
CA CB CG CD 168.1 180.0
CA CB CG HG1 293.4 300.0
CA CB CG HG2 42.8 60.0
HB1 CB CA HB2 250.5 240.1
CT CA N HN 11.4 90.0
N CA CT CB 237.8 240.0
N CA CT HA 119.5 120.0
CB CA CT HA 241.6 240.0
CT CA CB CG 131.4 180.0
CT CA CB HB1 256.6 300.0
CT CA CB HB2 6.1 60.0
O1 CT CA O2 184.7 180.0
CA CT O2 HO2 180.0 180.0
HA CA N HN 133.0 210.0
N CA HA CB 121.8 119.9
N CA HA CT 241.6 240.0
CB CA HA CT 119.8 120.1
HA CA CB CG 9.8 59.9
HA CA CB HB1 135.0 180.0
HA CA CB HB2 244.5 299.9
HA CA CT O1 207.2 30.1
HA CA CT O2 22.5 210.0
CG CB CA CT 131.4 180.0
CG CB CA HA 9.8 59.9
CA CB CG HB1 125.2 120.0
CA CB CG HB2 234.8 240.0
HB1 CB CG HB2 109.6 120.0
CD CG CB HG1 234.7 240.0
CD CG CB HG2 125.3 120.0
CB CG CD OE1 220.0 0.0
CB CG CD OE2 37.7 180.0
HG1 CG CB HG2 250.6 240.0
HB1 CB CA CT 256.6 300.0
HB1 CB CA HA 135.0 180.0
CA CB HB1 CG 238.5 239.9
CA CB HB1 HB2 119.2 119.9
CG CB HB1 HB2 240.7 240.0
HB1 CB CG CD 42.9 60.0
HB1 CB CG HG1 168.2 180.0
HB1 CB CG HG2 277.6 300.0
HB2 CB CA CT 6.1 60.0
HB2 CB CA HA 244.5 299.9
CA CB HB2 CG 121.5 120.0
CA CB HB2 HB1 240.8 240.1
CG CB HB2 HB1 119.3 120.0
HB2 CB CG CD 293.4 300.0
HB2 CB CG HG1 58.7 60.0
HB2 CB CG HG2 168.1 180.0
CD CG CB HB1 42.9 60.0
CD CG CB HB2 293.4 300.0
CB CG CD HG1 125.3 120.0
CB CG CD HG2 234.8 240.0
HG1 CG CD HG2 109.5 120.0
OE1 CD CG OE2 182.4 180.0
CG CD OE2 HOE2 180.1 180.0
HG1 CG CB HB1 168.2 180.0
HG1 CG CB HB2 58.7 60.0
CB CG HG1 CD 242.2 240.0
CB CG HG1 HG2 121.1 120.0
CD CG HG1 HG2 238.8 240.0
HG1 CG CD OE1 94.8 240.0
HG1 CG CD OE2 272.4 60.0
HG2 CG CB HB1 277.6 300.0
HG2 CG CB HB2 168.1 180.0
CB CG HG2 CD 117.7 120.0
CB CG HG2 HG1 238.9 240.0
CD CG HG2 HG1 121.2 120.0
HG2 CG CD OE1 345.3 120.0
HG2 CG CD OE2 162.9 300.0
OE1 CD CG HG1 94.8 240.0
OE1 CD CG HG2 345.3 120.0
CG CD OE1 OE2 177.3 180.0
OE1 CD OE2 HOE2 357.1 0.0
OE2 CD CG HG1 272.4 60.0
OE2 CD CG HG2 162.9 300.0
CG CD OE2 OE1 183.0 180.0
O1 CT CA HA 207.2 30.1
CA CT O1 O2 174.6 180.0
O1 CT O2 HO2 355.0 0.0
O2 CT CA HA 22.5 210.0
CA CT O2 O1 185.0 180.0