PDB Chemical Component DDE

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DDE

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.466 1.442
N H 1.020 1.006
N H2 1.020 1.006
CA C 1.535 1.522
CA CB 1.522 1.550
CA HA 1.115 1.096
C O 1.226 1.226
C OXT   1.354
CB CG 1.495 1.471
CB HB2 1.115 1.110
CB HB3 1.115 1.112
CG ND1 1.369 1.372
CG CD2 1.326 1.375
ND1 CE1 1.348 1.294
CD2 NE2 1.359 1.366
CD2 HD2 1.103 1.080
CE1 NE2 1.400 1.351
CE1 CAT 1.545 1.508
NE2 HE2 1.019 1.011
NAD CBI 1.342 1.378
NAD HAD1 1.020 1.015
NAD HAD2 1.020 1.014
CBI OAG 1.257 1.229
CBI CBW 1.536 1.519
CBW NCB 1.536 1.490
CBW CAU 1.509 1.534
CBW HBW 1.116 1.095
NCB CAB 1.501 1.532
NCB CAC 1.474 1.533
NCB CAA 1.468 1.533
CAB HAB1 1.114 1.092
CAB HAB2 1.115 1.092
CAB HAB3 1.115 1.093
CAC HAC1 1.114 1.092
CAC HAC2 1.115 1.092
CAC HAC3 1.115 1.092
CAA HAA1 1.114 1.092
CAA HAA2 1.115 1.091
CAA HAA3 1.116 1.092
CAU CAT 1.556 1.535
CAU HAU3 1.114 1.099
CAU HAU2 1.114 1.098
CAT HAT2 1.114 1.098
CAT HAT3 1.115 1.096
OXT HXT   0.979

Bond Angles for DDE

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N H 108.3 119.1
CA N H2 112.6 119.0
N CA C 108.3 111.1
N CA CB 111.8 110.6
N CA HA 109.9 106.2
H N H2 112.7 120.6
C CA CB 112.7 111.3
C CA HA 108.9 106.9
CA C O 120.8 123.0
CA C OXT   114.8
CB CA HA 105.2 110.5
CA CB CG 116.0 114.2
CA CB HB2 109.8 108.6
CA CB HB3 109.8 108.3
O C OXT   122.2
C OXT HXT   114.9
CG CB HB2 109.9 110.0
CG CB HB3 109.9 111.6
CB CG ND1 119.3 120.6
CB CG CD2 131.7 128.2
HB2 CB HB3 100.3 103.5
ND1 CG CD2 109.0 111.2
CG ND1 CE1 107.3 103.6
CG CD2 NE2 109.6 104.9
CG CD2 HD2 124.2 133.1
ND1 CE1 NE2 108.2 114.2
ND1 CE1 CAT 130.9 125.7
NE2 CD2 HD2 126.2 122.1
CD2 NE2 CE1 105.9 106.2
CD2 NE2 HE2 125.9 126.2
NE2 CE1 CAT 120.9 120.1
CE1 NE2 HE2 128.2 127.6
CE1 CAT CAU 141.8 113.1
CE1 CAT HAT2 101.3 108.5
CE1 CAT HAT3 101.3 110.7
CBI NAD HAD1 115.7 122.3
CBI NAD HAD2 128.5 121.0
NAD CBI OAG 128.5 123.6
NAD CBI CBW 115.7 113.0
HAD1 NAD HAD2 115.8 116.7
OAG CBI CBW 115.8 123.4
CBI CBW NCB 118.4 109.8
CBI CBW CAU 105.8 110.5
CBI CBW HBW 105.6 108.9
NCB CBW CAU 108.2 109.8
NCB CBW HBW 103.0 106.0
CBW NCB CAB 108.9 110.6
CBW NCB CAC 117.5 110.6
CBW NCB CAA 113.7 110.6
CAU CBW HBW 116.3 111.8
CBW CAU CAT 144.3 115.7
CBW CAU HAU3 100.5 109.0
CBW CAU HAU2 100.5 109.2
CAB NCB CAC 102.2 108.3
CAB NCB CAA 104.4 108.3
NCB CAB HAB1 108.9 107.8
NCB CAB HAB2 112.4 107.9
NCB CAB HAB3 112.4 107.8
CAC NCB CAA 108.7 108.3
NCB CAC HAC1 117.5 107.8
NCB CAC HAC2 109.3 107.8
NCB CAC HAC3 109.3 107.8
NCB CAA HAA1 113.7 107.8
NCB CAA HAA2 110.7 107.8
NCB CAA HAA3 110.7 107.8
HAB1 CAB HAB2 112.4 111.1
HAB1 CAB HAB3 112.4 111.1
HAB2 CAB HAB3 98.0 111.0
HAC1 CAC HAC2 109.3 111.0
HAC1 CAC HAC3 109.4 111.1
HAC2 CAC HAC3 100.8 111.2
HAA1 CAA HAA2 110.7 111.1
HAA1 CAA HAA3 110.7 111.0
HAA2 CAA HAA3 99.5 111.0
CAT CAU HAU3 100.5 108.0
CAT CAU HAU2 100.5 109.0
CAU CAT HAT2 101.3 108.4
CAU CAT HAT3 101.3 110.4
HAU3 CAU HAU2 106.9 105.4
HAT2 CAT HAT3 106.5 105.4

Torsion Angles for DDE

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H N CA H2 125.3 166.6
C CA N CB 124.8 124.1
C CA N HA 241.2 244.1
N CA C O 179.4 325.5
N CA C OXT   145.1
CB CA N HA 116.4 120.0
N CA CB CG 301.0 182.7
N CA CB HB2 66.3 305.8
N CA CB HB3 175.7 57.6
CA N H H2 234.7 193.6
H N CA C 180.0 16.5
H N CA CB 55.3 252.4
H N CA HA 298.8 132.4
CA N H2 H 122.9 166.4
H2 N CA C 54.7 209.9
H2 N CA CB 289.9 85.8
H2 N CA HA 173.5 325.8
C CA N H 180.0 16.5
C CA N H2 54.7 209.9
N CA C CB 235.8 236.3
N CA C HA 119.4 115.5
CB CA C HA 243.7 239.2
C CA CB CG 178.7 58.7
C CA CB HB2 304.0 181.8
C CA CB HB3 53.4 293.6
O C CA OXT   180.4
CA C OXT HXT   180.3
CB CA N H 55.3 252.4
CB CA N H2 289.9 85.8
N CA CB C 122.3 124.0
N CA CB HA 240.8 242.7
C CA CB HA 118.5 118.7
CB CA C O 303.6 89.1
CB CA C OXT   268.8
CG CB CA HB2 234.7 236.8
CG CB CA HB3 125.3 125.1
CA CB CG ND1 291.5 270.0
CA CB CG CD2 109.6 90.0
HB2 CB CA HB3 250.6 248.2
HA CA N H 298.8 132.4
HA CA N H2 173.5 325.8
N CA HA C 241.5 241.3
N CA HA CB 120.5 120.0
C CA HA CB 239.0 238.7
HA CA C O 60.0 210.0
HA CA C OXT   29.6
HA CA CB CG 60.2 300.0
HA CA CB HB2 185.5 63.1
HA CA CB HB3 294.9 174.9
O C CA CB 303.6 89.1
O C CA HA 60.0 210.0
CA C O OXT   179.6
O C OXT HXT   360.0
OXT C CA CB   268.8
OXT C CA HA   29.6
CA C OXT O   180.4
CG CB CA HA 60.2 300.0
CA CB CG HB2 125.3 122.4
CA CB CG HB3 234.7 236.7
HB2 CB CG HB3 109.5 114.3
ND1 CG CB CD2 181.9 179.9
CB CG ND1 CE1 178.7 180.0
CB CG CD2 NE2 182.0 179.9
CB CG CD2 HD2 2.0 359.9
HB2 CB CA HA 185.5 63.1
CA CB HB2 CG 231.3 234.3
CA CB HB2 HB3 115.6 114.9
CG CB HB2 HB3 244.3 240.6
HB2 CB CG ND1 166.2 147.6
HB2 CB CG CD2 344.3 327.6
HB3 CB CA HA 294.9 174.9
CA CB HB3 CG 128.7 126.6
CA CB HB3 HB2 244.4 244.8
CG CB HB3 HB2 115.7 118.3
HB3 CB CG ND1 56.8 33.2
HB3 CB CG CD2 234.8 213.3
ND1 CG CB HB2 166.2 147.6
ND1 CG CB HB3 56.8 33.2
CB CG ND1 CD2 178.5 180.1
ND1 CG CD2 NE2 0.2 0.0
ND1 CG CD2 HD2 180.2 180.0
CG ND1 CE1 NE2 359.4 0.1
CG ND1 CE1 CAT 179.1 180.0
CD2 CG CB HB2 344.3 327.6
CD2 CG CB HB3 234.8 213.3
CB CG CD2 ND1 181.8 179.9
CD2 CG ND1 CE1 0.2 359.9
NE2 CD2 CG HD2 180.0 180.0
CG CD2 NE2 CE1 359.4 0.0
CG CD2 NE2 HE2 179.4 179.9
CE1 ND1 CG CD2 0.2 359.9
CD2 NE2 CE1 ND1 0.7 359.9
NE2 CE1 ND1 CAT 180.3 180.1
ND1 CE1 NE2 HE2 180.7 180.0
ND1 CE1 CAT CAU 80.7 90.0
ND1 CE1 CAT HAT2 205.9 210.3
ND1 CE1 CAT HAT3 315.5 325.5
CG CD2 NE2 HD2 180.0 180.0
ND1 CE1 NE2 CD2 0.7 359.9
CD2 NE2 CE1 CAT 181.0 180.0
CE1 NE2 CD2 HE2 180.0 180.1
CG CD2 HD2 NE2 180.0 180.0
HD2 CD2 NE2 CE1 179.4 180.0
HD2 CD2 NE2 HE2 359.4 359.9
ND1 CE1 NE2 CAT 179.7 179.9
CE1 NE2 CD2 HD2 179.4 180.0
CD2 NE2 CE1 HE2 180.0 179.9
NE2 CE1 CAT CAU 260.3 270.0
NE2 CE1 CAT HAT2 25.6 30.3
NE2 CE1 CAT HAT3 135.1 145.4
ND1 CE1 CAT NE2 180.4 180.1
CAT CE1 NE2 HE2 1.0 0.1
CBW CAU CAT CE1 281.8 302.5
CE1 CAT CAU HAU3 156.6 180.0
CE1 CAT CAU HAU2 47.0 65.9
CAU CAT CE1 HAT2 234.8 239.7
CAU CAT CE1 HAT3 125.2 124.5
HAT2 CAT CE1 HAT3 250.5 244.8
HE2 NE2 CD2 HD2 359.4 359.9
CD2 NE2 HE2 CE1 180.0 180.1
HE2 NE2 CE1 CAT 1.0 0.1
HAD1 NAD CBI HAD2 180.6 180.0
OAG CBI NAD CBW 180.4 180.2
NAD CBI CBW NCB 0.5 244.6
NAD CBI CBW CAU 239.0 123.4
NAD CBI CBW HBW 115.2 0.2
CBI NAD HAD1 HAD2 179.5 180.0
HAD1 NAD CBI OAG 0.5 180.1
HAD1 NAD CBI CBW 180.1 359.9
CBI NAD HAD2 HAD1 180.6 180.0
HAD2 NAD CBI OAG 180.0 0.1
HAD2 NAD CBI CBW 359.5 179.9
OAG CBI NAD HAD1 0.5 180.1
OAG CBI NAD HAD2 180.0 0.1
NAD CBI OAG CBW 179.6 179.8
OAG CBI CBW NCB 180.2 64.4
OAG CBI CBW CAU 58.6 303.2
OAG CBI CBW HBW 294.8 180.0
CBW CBI NAD HAD1 180.1 359.9
CBW CBI NAD HAD2 359.5 179.9
NAD CBI CBW OAG 180.4 180.2
NCB CBW CBI CAU 121.5 121.2
NCB CBW CBI HBW 245.4 244.4
CBI CBW NCB CAB 179.1 180.0
CBI CBW NCB CAC 294.6 300.0
CBI CBW NCB CAA 63.1 60.0
CAU CBW CBI HBW 123.8 123.2
CBI CBW CAU CAT 306.5 298.0
CBI CBW CAU HAU3 71.8 60.0
CBI CBW CAU HAU2 181.3 174.7
CBI CBW NCB CAU 239.7 238.4
CBI CBW NCB HBW 116.0 117.4
CAU CBW NCB HBW 236.3 239.0
NCB CBW CAU CAT 178.7 176.8
NCB CBW CAU HAU3 303.9 298.8
NCB CBW CAU HAU2 53.4 53.5
CAB NCB CBW CAC 244.5 240.0
CAB NCB CBW CAA 116.0 120.0
CBW NCB CAB HAB1 180.0 194.3
CBW NCB CAB HAB2 305.2 314.3
CBW NCB CAB HAB3 54.7 74.3
CAC NCB CBW CAA 231.5 240.0
CBW NCB CAC HAC1 180.0 158.6
CBW NCB CAC HAC2 305.3 278.5
CBW NCB CAC HAC3 54.7 38.6
CBW NCB CAA HAA1 180.0 85.6
CBW NCB CAA HAA2 305.3 205.6
CBW NCB CAA HAA3 54.7 325.6
CE1 CAT CAU CBW 281.8 302.5
CBI CBW CAU NCB 127.9 121.2
CBI CBW CAU HBW 243.2 238.6
NCB CBW CAU HBW 115.3 117.4
CAU CBW NCB CAB 299.4 301.6
CAU CBW NCB CAC 54.9 61.6
CAU CBW NCB CAA 183.4 181.6
CAT CAU CBW HAU3 234.8 238.0
CAT CAU CBW HAU2 125.2 123.3
CBW CAU CAT HAT2 156.6 182.1
CBW CAU CAT HAT3 47.0 67.2
HAU3 CAU CBW HAU2 250.5 245.3
CBI CBW HBW NCB 235.1 242.0
CBI CBW HBW CAU 116.9 122.4
NCB CBW HBW CAU 241.8 240.4
HBW CBW NCB CAB 63.1 62.6
HBW CBW NCB CAC 178.6 182.6
HBW CBW NCB CAA 307.1 302.5
HBW CBW CAU CAT 63.4 59.4
HBW CBW CAU HAU3 188.6 181.4
HBW CBW CAU HAU2 298.1 296.1
CAB NCB CBW CAU 299.4 301.6
CAB NCB CBW HBW 63.1 62.6
CBW NCB CAB CAC 125.0 121.3
CBW NCB CAB CAA 238.2 238.6
CAC NCB CAB CAA 113.2 117.3
CAB NCB CAC HAC1 299.1 280.0
CAB NCB CAC HAC2 64.4 39.9
CAB NCB CAC HAC3 173.8 160.0
CAB NCB CAA HAA1 61.4 324.2
CAB NCB CAA HAA2 186.7 84.2
CAB NCB CAA HAA3 296.1 204.2
HAB1 CAB NCB HAB2 234.8 240.0
HAB1 CAB NCB HAB3 125.3 120.0
HAB2 CAB NCB HAB3 250.5 240.0
CAC NCB CBW CAU 54.9 61.6
CAC NCB CBW HBW 178.6 182.6
CBW NCB CAC CAB 240.9 238.6
CBW NCB CAC CAA 130.8 121.3
CAB NCB CAC CAA 250.0 242.7
CAC NCB CAB HAB1 55.0 73.0
CAC NCB CAB HAB2 180.2 193.0
CAC NCB CAB HAB3 289.7 313.0
CAC NCB CAA HAA1 312.9 206.9
CAC NCB CAA HAA2 78.2 326.9
CAC NCB CAA HAA3 187.6 86.9
HAC1 CAC NCB HAC2 234.7 240.1
HAC1 CAC NCB HAC3 125.3 120.0
HAC2 CAC NCB HAC3 250.6 239.9
CAA NCB CBW CAU 183.4 181.6
CAA NCB CBW HBW 307.1 302.5
CBW NCB CAA CAB 118.6 121.4
CBW NCB CAA CAC 227.1 238.7
CAB NCB CAA CAC 108.5 117.3
CAA NCB CAB HAB1 301.8 315.7
CAA NCB CAB HAB2 67.0 75.7
CAA NCB CAB HAB3 176.5 195.7
CAA NCB CAC HAC1 49.2 37.2
CAA NCB CAC HAC2 174.4 157.2
CAA NCB CAC HAC3 283.9 277.3
HAA1 CAA NCB HAA2 234.7 240.0
HAA1 CAA NCB HAA3 125.3 120.0
HAA2 CAA NCB HAA3 250.6 240.0
HAB1 CAB NCB CAC 55.0 73.0
HAB1 CAB NCB CAA 301.8 315.7
NCB CAB HAB1 HAB2 125.2 118.0
NCB CAB HAB1 HAB3 234.7 242.1
HAB2 CAB HAB1 HAB3 109.5 124.1
HAB2 CAB NCB CAC 180.2 193.0
HAB2 CAB NCB CAA 67.0 75.7
NCB CAB HAB2 HAB1 236.7 242.0
NCB CAB HAB2 HAB3 118.4 117.9
HAB1 CAB HAB2 HAB3 241.7 235.9
HAB3 CAB NCB CAC 289.7 313.0
HAB3 CAB NCB CAA 176.5 195.7
NCB CAB HAB3 HAB1 123.3 117.9
NCB CAB HAB3 HAB2 241.7 242.1
HAB1 CAB HAB3 HAB2 118.3 124.1
HAC1 CAC NCB CAA 49.2 37.2
NCB CAC HAC1 HAC2 125.2 117.9
NCB CAC HAC1 HAC3 234.7 242.1
HAC2 CAC HAC1 HAC3 109.5 124.2
HAC2 CAC NCB CAA 174.4 157.2
NCB CAC HAC2 HAC1 230.1 242.1
NCB CAC HAC2 HAC3 115.0 117.9
HAC1 CAC HAC2 HAC3 244.9 235.8
HAC3 CAC NCB CAA 283.9 277.3
NCB CAC HAC3 HAC1 129.9 117.9
NCB CAC HAC3 HAC2 245.0 242.1
HAC1 CAC HAC3 HAC2 115.1 124.2
NCB CAA HAA1 HAA2 125.3 118.0
NCB CAA HAA1 HAA3 234.7 242.0
HAA2 CAA HAA1 HAA3 109.4 124.1
NCB CAA HAA2 HAA1 233.0 242.0
NCB CAA HAA2 HAA3 116.5 118.0
HAA1 CAA HAA2 HAA3 243.5 235.9
NCB CAA HAA3 HAA1 127.0 118.0
NCB CAA HAA3 HAA2 243.5 242.1
HAA1 CAA HAA3 HAA2 116.5 124.1
CE1 CAT CAU HAT2 125.2 120.4
CE1 CAT CAU HAT3 234.8 235.3
CAT CAU CBW HBW 63.4 59.4
CBW CAU CAT HAU3 125.2 122.5
CBW CAU CAT HAU2 234.8 236.6
HAU3 CAU CAT HAU2 109.6 114.1
HAT2 CAT CAU HAT3 109.5 115.0
HAU3 CAU CBW HBW 188.6 181.4
CBW CAU HAU3 CAT 209.0 233.5
CBW CAU HAU3 HAU2 104.5 117.1
CAT CAU HAU3 HAU2 255.5 243.6
HAU3 CAU CAT HAT2 31.3 59.6
HAU3 CAU CAT HAT3 281.8 304.7
HAU2 CAU CBW HBW 298.1 296.1
CBW CAU HAU2 CAT 151.0 127.2
CBW CAU HAU2 HAU3 255.5 243.0
CAT CAU HAU2 HAU3 104.5 115.8
HAU2 CAU CAT HAT2 281.8 305.6
HAU2 CAU CAT HAT3 172.2 190.6
CE1 CAT HAT2 CAU 211.0 236.8
CE1 CAT HAT2 HAT3 105.5 118.6
HAT2 CAT CAU HAU3 31.3 59.6
HAT2 CAT CAU HAU2 281.8 305.6
CAU CAT HAT2 HAT3 254.5 241.8
CE1 CAT HAT3 CAU 149.0 126.0
CE1 CAT HAT3 HAT2 254.5 242.9
HAT3 CAT CAU HAU3 281.8 304.7
HAT3 CAT CAU HAU2 172.2 190.6
CAU CAT HAT3 HAT2 105.5 116.8