PDB Chemical Component DDA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DDA

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.513	1.532
C1	O5	1.431	1.429
C1	O1	1.423	1.429
C1	H1	1.100	1.090
C2	C3	1.522	1.532
C2	H21	1.100	1.090
C2	H22	1.100	1.089
C3	C4	1.527	1.532
C3	O3	1.450	1.429
C3	H3	1.100	1.090
C4	C5	1.508	1.531
C4	O4	1.430	1.428
C4	H4	1.100	1.090
C5	C6	1.488	1.529
C5	O5	1.420	1.429
C5	H5	1.100	1.090
C6	H61	1.100	1.089
C6	H62	1.100	1.091
C6	H63	1.101	1.090
O1	HO1	0.950	0.967
O3	HO3	0.950	0.966
O4	HO4	0.950	0.967

Bond Angles for DDA

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O5	107.0	109.4
C2	C1	O1	106.0	109.5
C2	C1	H1	111.6	109.4
C1	C2	C3	112.9	109.1
C1	C2	H21	108.6	109.5
C1	C2	H22	108.6	109.5
O5	C1	O1	105.8	109.5
O5	C1	H1	112.9	109.5
C1	O5	C5	109.1	114.2
O1	C1	H1	113.0	109.5
C1	O1	HO1	109.5	114.0
C3	C2	H21	108.6	109.6
C3	C2	H22	108.6	109.5
C2	C3	C4	111.5	109.1
C2	C3	O3	107.4	109.5
C2	C3	H3	110.8	109.5
H21	C2	H22	109.4	109.6
C4	C3	O3	104.1	109.6
C4	C3	H3	110.8	109.5
C3	C4	C5	108.8	109.2
C3	C4	O4	112.7	109.5
C3	C4	H4	107.6	109.5
O3	C3	H3	112.0	109.6
C3	O3	HO3	109.5	114.0
C5	C4	O4	110.8	109.5
C5	C4	H4	107.9	109.5
C4	C5	C6	114.1	109.5
C4	C5	O5	105.5	109.4
C4	C5	H5	109.6	109.5
O4	C4	H4	108.9	109.6
C4	O4	HO4	109.5	114.0
C6	C5	O5	106.9	109.5
C6	C5	H5	109.8	109.5
C5	C6	H61	109.5	109.5
C5	C6	H62	109.5	109.5
C5	C6	H63	109.5	109.5
O5	C5	H5	110.9	109.5
H61	C6	H62	109.5	109.5
H61	C6	H63	109.5	109.5
H62	C6	H63	109.5	109.4

Torsion Angles for DDA

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O5	C1	C2	O1	247.4	240.0
O5	C1	C2	H1	124.0	120.0
C2	C1	O5	C5	290.5	298.8
O1	C1	C2	H1	236.6	240.0
C2	C1	O1	HO1	180.0	180.0
C3	C2	C1	H21	239.5	240.1
C3	C2	C1	H22	120.5	119.9
C1	C2	C3	C4	316.0	303.0
C1	C2	C3	O3	202.5	183.1
C1	C2	C3	H3	80.0	62.9
H21	C2	C1	H22	241.1	239.8
C2	C1	O5	O1	112.7	120.0
C2	C1	O5	H1	236.8	240.1
O5	C1	C2	C3	52.1	57.6
O5	C1	C2	H21	172.6	177.5
O5	C1	C2	H22	291.6	297.7
O1	C1	O5	H1	124.1	120.1
O5	C1	O1	HO1	293.4	299.9
C4	C5	O5	C1	76.3	61.2
C6	C5	O5	C1	198.1	181.1
C1	O5	C5	H5	317.8	301.2
C2	C1	O1	O5	246.6	240.1
C2	C1	O1	H1	122.6	120.0
O1	C1	C2	C3	164.7	177.6
O1	C1	C2	H21	285.2	297.5
O1	C1	C2	H22	44.1	57.7
O5	C1	O1	H1	235.9	239.9
O1	C1	O5	C5	177.9	178.9
C2	C1	H1	O5	120.6	119.9
C2	C1	H1	O1	240.7	240.0
H1	C1	C2	C3	288.1	297.6
H1	C1	C2	H21	48.6	57.5
H1	C1	C2	H22	167.6	177.7
O5	C1	H1	O1	120.1	120.1
H1	C1	O5	C5	53.7	58.8
H1	C1	O1	HO1	57.4	60.0
C3	C2	C1	O5	52.1	57.6
C3	C2	C1	O1	164.7	177.6
C3	C2	C1	H1	288.1	297.6
C1	C2	C3	H21	120.5	119.9
C1	C2	C3	H22	239.5	240.1
H21	C2	C3	H22	118.9	120.3
C4	C3	C2	O3	113.5	119.9
C4	C3	C2	H3	236.1	240.1
C2	C3	C4	C5	48.7	57.0
C2	C3	C4	O4	172.0	176.9
C2	C3	C4	H4	292.1	297.1
O3	C3	C2	H3	122.6	120.2
C2	C3	O3	HO3	180.0	300.0
H21	C2	C1	O5	172.6	177.5
H21	C2	C1	O1	285.2	297.5
H21	C2	C1	H1	48.6	57.5
C1	C2	H21	C3	236.8	240.3
C1	C2	H21	H22	118.4	120.1
C3	C2	H21	H22	241.6	239.8
H21	C2	C3	C4	195.5	183.2
H21	C2	C3	O3	82.0	63.2
H21	C2	C3	H3	319.4	303.0
H22	C2	C1	O5	291.6	297.7
H22	C2	C1	O1	44.1	57.7
H22	C2	C1	H1	167.6	177.7
C1	C2	H22	C3	123.2	119.7
C1	C2	H22	H21	241.6	239.9
C3	C2	H22	H21	118.4	120.2
H22	C2	C3	C4	76.6	62.9
H22	C2	C3	O3	323.1	303.0
H22	C2	C3	H3	200.5	182.7
C4	C3	C2	H21	195.5	183.2
C4	C3	C2	H22	76.6	62.9
C2	C3	C4	O3	244.5	240.1
C2	C3	C4	H3	124.0	119.9
O3	C3	C4	H3	239.5	239.7
C4	C3	O3	HO3	61.6	180.4
C5	C4	C3	O4	236.7	240.1
C5	C4	C3	H4	116.6	119.9
C3	C4	C5	C6	179.6	182.5
C3	C4	C5	O5	296.6	302.4
C3	C4	C5	H5	56.0	62.4
O4	C4	C3	H4	239.9	239.8
C3	C4	O4	HO4	180.0	60.0
O3	C3	C2	H21	82.0	63.2
O3	C3	C2	H22	323.1	303.0
C2	C3	O3	C4	118.4	119.6
C2	C3	O3	H3	238.1	239.8
C4	C3	O3	H3	119.7	120.2
O3	C3	C4	C5	164.2	176.8
O3	C3	C4	O4	287.5	296.8
O3	C3	C4	H4	47.6	57.0
H3	C3	C2	H21	319.4	303.0
H3	C3	C2	H22	200.5	182.7
C2	C3	H3	C4	235.6	240.4
C2	C3	H3	O3	119.9	120.2
C4	C3	H3	O3	244.2	239.7
H3	C3	C4	C5	284.8	297.1
H3	C3	C4	O4	48.1	57.0
H3	C3	C4	H4	168.1	177.3
H3	C3	O3	HO3	301.8	60.2
C1	O5	C5	C4	76.3	61.2
C5	C4	C3	O3	164.2	176.8
C5	C4	C3	H3	284.8	297.1
C3	C4	C5	O4	124.5	119.9
C3	C4	C5	H4	243.5	240.2
O4	C4	C5	H4	119.1	120.2
C5	C4	O4	HO4	302.2	179.7
C6	C5	C4	O5	243.0	240.0
C6	C5	C4	H5	123.6	120.1
C4	C5	C6	H61	180.0	60.0
C4	C5	C6	H62	300.0	180.1
C4	C5	C6	H63	60.0	300.0
O5	C5	C4	H5	240.6	240.0
O4	C4	C3	O3	287.5	296.8
O4	C4	C3	H3	48.1	57.0
C3	C4	O4	C5	237.8	240.3
C3	C4	O4	H4	119.4	120.1
C5	C4	O4	H4	241.5	239.8
O4	C4	C5	C6	55.1	62.5
O4	C4	C5	O5	172.2	182.5
O4	C4	C5	H5	291.5	302.5
H4	C4	C3	O3	47.6	57.0
H4	C4	C3	H3	168.1	177.3
C3	C4	H4	C5	117.2	119.7
C3	C4	H4	O4	237.5	239.8
C5	C4	H4	O4	120.3	120.2
H4	C4	C5	C6	296.0	302.3
H4	C4	C5	O5	53.1	62.3
H4	C4	C5	H5	172.5	182.2
H4	C4	O4	HO4	60.7	299.9
C1	O5	C5	C6	198.1	181.1
C6	C5	C4	O4	55.1	62.5
C6	C5	C4	H4	296.0	302.3
C4	C5	C6	O5	116.2	119.9
C4	C5	C6	H5	236.6	240.0
O5	C5	C6	H5	120.3	120.1
H61	C6	C5	H62	240.0	239.9
H61	C6	C5	H63	120.0	120.0
H62	C6	C5	H63	240.0	240.1
C5	O5	C1	O1	177.9	178.9
C5	O5	C1	H1	53.7	58.8
O5	C5	C4	O4	172.2	182.5
O5	C5	C4	H4	53.1	62.3
C4	C5	O5	C6	238.2	240.0
C4	C5	O5	H5	118.5	119.9
C6	C5	O5	H5	240.3	239.9
O5	C5	C6	H61	63.8	300.1
O5	C5	C6	H62	183.8	60.1
O5	C5	C6	H63	303.8	180.0
H5	C5	C4	O4	291.5	302.5
H5	C5	C4	H4	172.5	182.2
C4	C5	H5	C6	126.0	120.0
C4	C5	H5	O5	244.0	240.1
C6	C5	H5	O5	117.9	120.1
H5	C5	C6	H61	303.4	180.0
H5	C5	C6	H62	63.4	300.1
H5	C5	C6	H63	183.4	60.0
H61	C6	C5	O5	63.8	300.1
H61	C6	C5	H5	303.4	180.0
C5	C6	H61	H62	120.0	120.0
C5	C6	H61	H63	240.0	240.0
H62	C6	H61	H63	120.0	119.9
H62	C6	C5	O5	183.8	60.1
H62	C6	C5	H5	63.4	300.1
C5	C6	H62	H61	240.0	239.9
C5	C6	H62	H63	120.0	119.9
H61	C6	H62	H63	240.0	240.0
H63	C6	C5	O5	303.8	180.0
H63	C6	C5	H5	183.4	60.0
C5	C6	H63	H61	120.0	120.1
C5	C6	H63	H62	240.0	240.1
H61	C6	H63	H62	120.0	120.0
HO1	O1	C1	H1	57.4	60.0
HO3	O3	C3	H3	301.8	60.2
HO4	O4	C4	H4	60.7	299.9