PDB Chemical Component DD9
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DD9
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
C1 |
1.512 |
1.530 |
| C1 |
H1 |
1.100 |
1.090 |
| C1 |
H1A |
1.100 |
1.090 |
| C1 |
H1B |
1.100 |
1.090 |
| C3 |
C2 |
1.527 |
1.530 |
| C2 |
H2 |
1.100 |
1.090 |
| C2 |
H2A |
1.100 |
1.090 |
| C4 |
C3 |
1.524 |
1.530 |
| C3 |
H3 |
1.100 |
1.090 |
| C3 |
H3A |
1.099 |
1.090 |
| C5 |
C4 |
1.526 |
1.530 |
| C4 |
H4 |
1.100 |
1.090 |
| C4 |
H4A |
1.100 |
1.090 |
| C6 |
C5 |
1.526 |
1.530 |
| C5 |
H5 |
1.100 |
1.090 |
| C5 |
H5A |
1.100 |
1.090 |
| C7 |
C6 |
1.523 |
1.530 |
| C6 |
H6 |
1.100 |
1.090 |
| C6 |
H6A |
1.100 |
1.090 |
| C8 |
C7 |
1.523 |
1.530 |
| C7 |
H7 |
1.101 |
1.090 |
| C7 |
H7A |
1.100 |
1.090 |
| C9 |
C8 |
1.512 |
1.530 |
| C8 |
H8 |
1.100 |
1.090 |
| C8 |
H8A |
1.100 |
1.090 |
| C9 |
H9 |
1.100 |
1.090 |
| C9 |
H9A |
1.100 |
1.090 |
| C9 |
H9B |
1.100 |
1.090 |
Bond Angles for DD9
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
H1 |
109.5 |
109.5 |
| C2 |
C1 |
H1A |
109.5 |
109.5 |
| C2 |
C1 |
H1B |
109.5 |
109.5 |
| H1 |
C1 |
H1A |
109.4 |
109.4 |
| H1 |
C1 |
H1B |
109.4 |
109.5 |
| H1A |
C1 |
H1B |
109.5 |
109.5 |
| C3 |
C2 |
H2 |
109.5 |
109.5 |
| C3 |
C2 |
H2A |
109.5 |
109.5 |
| H2 |
C2 |
H2A |
109.5 |
109.5 |
| C4 |
C3 |
H3 |
108.9 |
109.5 |
| C4 |
C3 |
H3A |
108.5 |
109.5 |
| H3 |
C3 |
H3A |
110.8 |
109.4 |
| C5 |
C4 |
H4 |
108.8 |
109.5 |
| C5 |
C4 |
H4A |
108.4 |
109.5 |
| H4 |
C4 |
H4A |
111.0 |
109.5 |
| C6 |
C5 |
H5 |
108.8 |
109.5 |
| C6 |
C5 |
H5A |
108.4 |
109.5 |
| H5 |
C5 |
H5A |
110.9 |
109.4 |
| C7 |
C6 |
H6 |
108.9 |
109.5 |
| C7 |
C6 |
H6A |
108.4 |
109.5 |
| H6 |
C6 |
H6A |
111.0 |
109.5 |
| C8 |
C7 |
H7 |
108.9 |
109.5 |
| C8 |
C7 |
H7A |
108.5 |
109.5 |
| H7 |
C7 |
H7A |
110.8 |
109.4 |
| C9 |
C8 |
H8 |
108.9 |
109.5 |
| C9 |
C8 |
H8A |
108.6 |
109.5 |
| H8 |
C8 |
H8A |
110.7 |
109.5 |
| H9 |
C9 |
H9A |
109.4 |
109.4 |
| H9 |
C9 |
H9B |
109.5 |
109.5 |
| H9A |
C9 |
H9B |
109.5 |
109.5 |
Torsion Angles for DD9
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H1 |
C1 |
C2 |
H1A |
240.0 |
240.1 |
| H1 |
C1 |
C2 |
H1B |
120.0 |
120.0 |
| H1A |
C1 |
C2 |
H1B |
240.0 |
240.0 |
| C2 |
C1 |
H1 |
H1A |
120.0 |
120.0 |
| C2 |
C1 |
H1 |
H1B |
240.0 |
240.0 |
| H1A |
C1 |
H1 |
H1B |
120.0 |
120.0 |
| C2 |
C1 |
H1A |
H1 |
240.0 |
240.0 |
| C2 |
C1 |
H1A |
H1B |
120.0 |
120.0 |
| H1 |
C1 |
H1A |
H1B |
240.0 |
240.0 |
| C2 |
C1 |
H1B |
H1 |
120.0 |
120.0 |
| C2 |
C1 |
H1B |
H1A |
240.0 |
240.0 |
| H1 |
C1 |
H1B |
H1A |
120.0 |
119.9 |
| C3 |
C2 |
C1 |
H1 |
213.5 |
300.0 |
| C3 |
C2 |
C1 |
H1A |
333.5 |
60.0 |
| C3 |
C2 |
C1 |
H1B |
93.5 |
180.0 |
| H2 |
C2 |
C3 |
H2A |
120.0 |
120.0 |
| H2 |
C2 |
C1 |
H1 |
333.5 |
60.0 |
| H2 |
C2 |
C1 |
H1A |
93.5 |
180.0 |
| H2 |
C2 |
C1 |
H1B |
213.5 |
300.0 |
| C3 |
C2 |
H2 |
H2A |
240.0 |
240.0 |
| H2A |
C2 |
C1 |
H1 |
93.5 |
180.0 |
| H2A |
C2 |
C1 |
H1A |
213.5 |
300.0 |
| H2A |
C2 |
C1 |
H1B |
333.5 |
60.0 |
| C3 |
C2 |
H2A |
H2 |
120.0 |
120.0 |
| C4 |
C3 |
C2 |
H2 |
64.7 |
60.0 |
| C4 |
C3 |
C2 |
H2A |
304.7 |
300.0 |
| H3 |
C3 |
C4 |
H3A |
120.7 |
119.9 |
| H3 |
C3 |
C2 |
H2 |
184.7 |
180.0 |
| H3 |
C3 |
C2 |
H2A |
64.7 |
60.0 |
| C4 |
C3 |
H3 |
H3A |
240.7 |
240.0 |
| H3A |
C3 |
C2 |
H2 |
305.4 |
300.0 |
| H3A |
C3 |
C2 |
H2A |
185.4 |
180.0 |
| C4 |
C3 |
H3A |
H3 |
119.5 |
120.0 |
| C5 |
C4 |
C3 |
H3 |
29.8 |
60.0 |
| C5 |
C4 |
C3 |
H3A |
269.1 |
300.0 |
| H4 |
C4 |
C5 |
H4A |
120.8 |
120.0 |
| H4 |
C4 |
C3 |
H3 |
149.8 |
180.0 |
| H4 |
C4 |
C3 |
H3A |
29.1 |
60.0 |
| C5 |
C4 |
H4 |
H4A |
240.8 |
240.0 |
| H4A |
C4 |
C3 |
H3 |
270.6 |
300.0 |
| H4A |
C4 |
C3 |
H3A |
149.9 |
180.0 |
| C5 |
C4 |
H4A |
H4 |
119.5 |
120.0 |
| C6 |
C5 |
C4 |
H4 |
71.2 |
60.0 |
| C6 |
C5 |
C4 |
H4A |
310.4 |
300.0 |
| H5 |
C5 |
C6 |
H5A |
120.8 |
119.9 |
| H5 |
C5 |
C4 |
H4 |
191.2 |
180.0 |
| H5 |
C5 |
C4 |
H4A |
70.4 |
60.0 |
| C6 |
C5 |
H5 |
H5A |
240.8 |
240.0 |
| H5A |
C5 |
C4 |
H4 |
312.0 |
300.0 |
| H5A |
C5 |
C4 |
H4A |
191.2 |
180.0 |
| C6 |
C5 |
H5A |
H5 |
119.5 |
120.0 |
| C7 |
C6 |
C5 |
H5 |
43.4 |
60.0 |
| C7 |
C6 |
C5 |
H5A |
282.6 |
300.0 |
| H6 |
C6 |
C7 |
H6A |
120.8 |
120.0 |
| H6 |
C6 |
C5 |
H5 |
163.5 |
180.0 |
| H6 |
C6 |
C5 |
H5A |
42.7 |
60.0 |
| C7 |
C6 |
H6 |
H6A |
240.8 |
240.0 |
| H6A |
C6 |
C5 |
H5 |
284.2 |
300.0 |
| H6A |
C6 |
C5 |
H5A |
163.5 |
180.0 |
| C7 |
C6 |
H6A |
H6 |
119.5 |
120.0 |
| C8 |
C7 |
C6 |
H6 |
84.5 |
60.0 |
| C8 |
C7 |
C6 |
H6A |
323.7 |
300.0 |
| H7 |
C7 |
C8 |
H7A |
120.7 |
119.9 |
| H7 |
C7 |
C6 |
H6 |
204.5 |
180.0 |
| H7 |
C7 |
C6 |
H6A |
83.7 |
60.0 |
| C8 |
C7 |
H7 |
H7A |
240.7 |
240.0 |
| H7A |
C7 |
C6 |
H6 |
325.2 |
300.0 |
| H7A |
C7 |
C6 |
H6A |
204.4 |
180.0 |
| C8 |
C7 |
H7A |
H7 |
119.5 |
120.0 |
| C9 |
C8 |
C7 |
H7 |
72.4 |
60.0 |
| C9 |
C8 |
C7 |
H7A |
311.7 |
300.0 |
| H8 |
C8 |
C9 |
H8A |
120.6 |
120.0 |
| H8 |
C8 |
C7 |
H7 |
192.4 |
180.0 |
| H8 |
C8 |
C7 |
H7A |
71.7 |
60.0 |
| C9 |
C8 |
H8 |
H8A |
240.6 |
240.0 |
| H8A |
C8 |
C7 |
H7 |
313.1 |
300.0 |
| H8A |
C8 |
C7 |
H7A |
192.4 |
180.0 |
| C9 |
C8 |
H8A |
H8 |
119.6 |
120.0 |
| H9 |
C9 |
C8 |
H8 |
122.4 |
180.0 |
| H9 |
C9 |
C8 |
H8A |
1.8 |
60.0 |
| H9A |
C9 |
H9 |
H9B |
120.0 |
120.0 |
| H9A |
C9 |
C8 |
H8 |
242.4 |
300.0 |
| H9A |
C9 |
C8 |
H8A |
121.7 |
180.0 |
| H9 |
C9 |
H9A |
H9B |
240.0 |
240.0 |
| H9B |
C9 |
C8 |
H8 |
2.4 |
60.0 |
| H9B |
C9 |
C8 |
H8A |
241.7 |
300.0 |
| H9 |
C9 |
H9B |
H9A |
120.0 |
119.9 |