PDB Chemical Component DCY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DCY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.493 |
1.469 |
| N |
H |
1.020 |
1.008 |
| N |
H2 |
1.020 |
1.009 |
| CA |
C |
1.535 |
1.506 |
| CA |
CB |
1.528 |
1.529 |
| CA |
HA |
1.116 |
1.090 |
| C |
O |
1.247 |
1.208 |
| C |
OXT |
1.244 |
1.342 |
| CB |
SG |
1.816 |
1.814 |
| CB |
HB2 |
1.115 |
1.090 |
| CB |
HB3 |
1.116 |
1.090 |
| SG |
HG |
0.950 |
1.345 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for DCY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
110.8 |
106.7 |
| CA |
N |
H2 |
111.7 |
106.7 |
| N |
CA |
C |
110.8 |
109.5 |
| N |
CA |
CB |
109.0 |
109.5 |
| N |
CA |
HA |
108.9 |
109.4 |
| H |
N |
H2 |
111.7 |
106.8 |
| C |
CA |
CB |
109.7 |
109.5 |
| C |
CA |
HA |
108.3 |
109.5 |
| CA |
C |
O |
119.0 |
120.0 |
| CA |
C |
OXT |
117.7 |
120.0 |
| CB |
CA |
HA |
110.0 |
109.4 |
| CA |
CB |
SG |
116.1 |
109.5 |
| CA |
CB |
HB2 |
109.8 |
109.4 |
| CA |
CB |
HB3 |
109.8 |
109.5 |
| O |
C |
OXT |
123.3 |
119.9 |
| C |
OXT |
HXT |
117.6 |
120.0 |
| SG |
CB |
HB2 |
109.8 |
109.5 |
| SG |
CB |
HB3 |
109.8 |
109.4 |
| CB |
SG |
HG |
116.1 |
100.0 |
| HB2 |
CB |
HB3 |
100.3 |
109.5 |
Torsion Angles for DCY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.2 |
113.9 |
| C |
CA |
N |
CB |
239.2 |
240.0 |
| C |
CA |
N |
HA |
119.0 |
120.0 |
| N |
CA |
C |
O |
188.1 |
30.1 |
| N |
CA |
C |
OXT |
8.7 |
210.0 |
| CB |
CA |
N |
HA |
239.9 |
240.0 |
| N |
CA |
CB |
SG |
294.0 |
60.0 |
| N |
CA |
CB |
HB2 |
59.4 |
180.0 |
| N |
CA |
CB |
HB3 |
168.8 |
300.0 |
| CA |
N |
H |
H2 |
234.8 |
246.2 |
| H |
N |
CA |
C |
180.0 |
53.8 |
| H |
N |
CA |
CB |
300.8 |
173.8 |
| H |
N |
CA |
HA |
60.9 |
293.8 |
| CA |
N |
H2 |
H |
124.7 |
113.8 |
| H2 |
N |
CA |
C |
54.8 |
299.9 |
| H2 |
N |
CA |
CB |
175.6 |
60.0 |
| H2 |
N |
CA |
HA |
295.7 |
179.9 |
| C |
CA |
N |
H |
180.0 |
53.8 |
| C |
CA |
N |
H2 |
54.8 |
299.9 |
| N |
CA |
C |
CB |
120.5 |
120.0 |
| N |
CA |
C |
HA |
240.6 |
240.0 |
| CB |
CA |
C |
HA |
120.1 |
120.0 |
| C |
CA |
CB |
SG |
55.6 |
180.0 |
| C |
CA |
CB |
HB2 |
180.9 |
300.0 |
| C |
CA |
CB |
HB3 |
290.3 |
60.0 |
| O |
C |
CA |
OXT |
179.4 |
180.1 |
| CA |
C |
OXT |
HXT |
180.0 |
180.1 |
| CB |
CA |
N |
H |
300.8 |
173.8 |
| CB |
CA |
N |
H2 |
175.6 |
60.0 |
| N |
CA |
CB |
C |
238.5 |
240.0 |
| N |
CA |
CB |
HA |
119.4 |
120.0 |
| C |
CA |
CB |
HA |
241.0 |
240.0 |
| CB |
CA |
C |
O |
67.7 |
270.1 |
| CB |
CA |
C |
OXT |
248.3 |
90.0 |
| SG |
CB |
CA |
HB2 |
234.7 |
240.0 |
| SG |
CB |
CA |
HB3 |
125.3 |
120.0 |
| CA |
CB |
SG |
HG |
180.0 |
180.0 |
| HB2 |
CB |
CA |
HB3 |
250.6 |
240.0 |
| HA |
CA |
N |
H |
60.9 |
293.8 |
| HA |
CA |
N |
H2 |
295.7 |
179.9 |
| N |
CA |
HA |
C |
120.6 |
120.0 |
| N |
CA |
HA |
CB |
240.5 |
240.0 |
| C |
CA |
HA |
CB |
119.9 |
120.0 |
| HA |
CA |
C |
O |
307.6 |
150.1 |
| HA |
CA |
C |
OXT |
128.2 |
330.0 |
| HA |
CA |
CB |
SG |
174.6 |
300.0 |
| HA |
CA |
CB |
HB2 |
299.9 |
60.0 |
| HA |
CA |
CB |
HB3 |
49.3 |
180.0 |
| O |
C |
CA |
CB |
67.7 |
270.1 |
| O |
C |
CA |
HA |
307.6 |
150.1 |
| CA |
C |
O |
OXT |
180.6 |
179.9 |
| O |
C |
OXT |
HXT |
0.7 |
360.0 |
| OXT |
C |
CA |
CB |
248.3 |
90.0 |
| OXT |
C |
CA |
HA |
128.2 |
330.0 |
| CA |
C |
OXT |
O |
179.4 |
180.1 |
| SG |
CB |
CA |
HA |
174.6 |
300.0 |
| CA |
CB |
SG |
HB2 |
125.3 |
120.0 |
| CA |
CB |
SG |
HB3 |
234.7 |
240.0 |
| HB2 |
CB |
SG |
HB3 |
109.4 |
120.0 |
| HB2 |
CB |
CA |
HA |
299.9 |
60.0 |
| CA |
CB |
HB2 |
SG |
231.2 |
240.0 |
| CA |
CB |
HB2 |
HB3 |
115.6 |
120.0 |
| SG |
CB |
HB2 |
HB3 |
244.4 |
240.0 |
| HB2 |
CB |
SG |
HG |
54.7 |
60.0 |
| HB3 |
CB |
CA |
HA |
49.3 |
180.0 |
| CA |
CB |
HB3 |
SG |
128.8 |
120.0 |
| CA |
CB |
HB3 |
HB2 |
244.4 |
240.0 |
| SG |
CB |
HB3 |
HB2 |
115.6 |
120.0 |
| HB3 |
CB |
SG |
HG |
305.3 |
300.0 |
| HG |
SG |
CB |
HB2 |
54.7 |
60.0 |
| HG |
SG |
CB |
HB3 |
305.3 |
300.0 |