PDB Chemical Component DCT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DCT

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.334 1.345
N1 C6 1.356 1.363
N1 C1' 1.377 1.464
C2 N3 1.321 1.332
C2 O2 1.245 1.219
N3 C4 1.322 1.326
C4 C5 1.408 1.409
C4 N4 1.329 1.376
C5 C6 1.334 1.354
C5 H5 1.102 1.080
C6 H6 1.104 1.080
N4 HN41 1.020 0.971
N4 HN42 1.020 0.970
C1' C2' 1.526 1.540
C1' O4' 1.350 1.438
C1' H1' 1.115 1.091
C2' C3' 1.497 1.548
C2' H2' 1.115 1.090
C2' H2'' 1.115 1.090
C3' C4' 1.551 1.549
C3' H3'1 1.115 1.090
C3' H3'2 1.115 1.090
C4' O4' 1.468 1.445
C4' C5' 1.527 1.530
C4' H4' 1.116 1.090
C5' O5' 1.447 1.428
C5' H5' 1.114 1.090
C5' H5'' 1.116 1.090
O5' PA 1.634 1.608
PA O1A 1.539 1.480
PA O2A 1.423 1.610
PA O3A 1.608 1.609
O2A HOA2 0.950 0.966
O3A PB 1.566 1.609
PB O1B 1.563 1.480
PB O2B 1.500 1.609
PB O3B 1.540 1.610
O2B HOB2 0.950 0.966
O3B PG 1.593 1.610
PG O1G 1.471 1.480
PG O2G 1.480 1.609
PG O3G 1.568 1.609
O2G HOG2 0.950 0.967
O3G HOG3 0.950 0.967

Bond Angles for DCT

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 118.7 120.3
C2 N1 C1' 120.4 119.8
N1 C2 N3 122.0 121.1
N1 C2 O2 119.2 119.5
C6 N1 C1' 119.6 119.9
N1 C6 C5 121.8 119.3
N1 C6 H6 119.9 120.3
N1 C1' C2' 111.5 109.9
N1 C1' O4' 112.5 109.9
N1 C1' H1' 104.9 109.9
N3 C2 O2 118.8 119.4
C2 N3 C4 119.6 120.7
N3 C4 C5 121.1 119.6
N3 C4 N4 117.6 120.2
C5 C4 N4 121.2 120.2
C4 C5 C6 116.5 119.0
C4 C5 H5 124.2 120.5
C4 N4 HN41 117.6 120.0
C4 N4 HN42 109.3 120.1
C6 C5 H5 119.2 120.5
C5 C6 H6 118.3 120.4
HN41 N4 HN42 109.3 120.0
C2' C1' O4' 105.9 107.4
C2' C1' H1' 111.5 109.8
C1' C2' C3' 102.6 104.2
C1' C2' H2' 114.8 110.6
C1' C2' H2'' 114.8 110.5
O4' C1' H1' 110.6 109.9
C1' O4' C4' 112.4 106.9
C3' C2' H2' 114.8 110.5
C3' C2' H2'' 114.8 110.4
C2' C3' C4' 103.4 102.1
C2' C3' H3'1 114.5 110.9
C2' C3' H3'2 114.5 110.9
H2' C2' H2'' 95.6 110.5
C4' C3' H3'1 114.5 110.9
C4' C3' H3'2 114.5 110.9
C3' C4' O4' 103.5 103.6
C3' C4' C5' 114.4 110.7
C3' C4' H4' 111.2 110.6
H3'1 C3' H3'2 95.9 110.8
O4' C4' C5' 112.2 110.7
O4' C4' H4' 113.5 110.5
C5' C4' H4' 102.4 110.5
C4' C5' O5' 110.3 109.5
C4' C5' H5' 111.9 109.4
C4' C5' H5'' 111.9 109.4
O5' C5' H5' 111.9 109.5
O5' C5' H5'' 111.9 109.5
C5' O5' PA 123.6 106.8
H5' C5' H5'' 98.5 109.4
O5' PA O1A 111.3 109.5
O5' PA O2A 107.7 109.5
O5' PA O3A 102.2 109.5
O1A PA O2A 121.2 109.4
O1A PA O3A 110.0 109.4
O2A PA O3A 102.5 109.5
PA O2A HOA2 107.7 106.8
PA O3A PB 133.3 106.9
O3A PB O1B 109.6 109.4
O3A PB O2B 108.6 109.5
O3A PB O3B 97.7 109.5
O1B PB O2B 117.8 109.5
O1B PB O3B 108.7 109.5
O2B PB O3B 112.4 109.4
PB O2B HOB2 108.5 106.8
PB O3B PG 129.8 106.8
O3B PG O1G 106.1 109.5
O3B PG O2G 108.1 109.5
O3B PG O3G 95.1 109.5
O1G PG O2G 117.6 109.5
O1G PG O3G 112.7 109.5
O2G PG O3G 114.3 109.5
PG O2G HOG2 108.1 106.8
PG O3G HOG3 95.1 106.9

Torsion Angles for DCT

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 N1 C2 C1' 167.0 180.0
C2 N1 C6 C5 5.7 359.7
C2 N1 C6 H6 185.8 180.0
C2 N1 C1' C2' 101.6 300.3
C2 N1 C1' O4' 220.5 58.3
C2 N1 C1' H1' 340.8 179.3
N3 C2 N1 O2 178.6 180.0
N1 C2 N3 C4 1.8 359.9
C2 N1 C6 C1' 192.9 180.0
C6 N1 C2 N3 354.8 0.1
C6 N1 C2 O2 176.2 180.0
C6 N1 C1' C2' 294.7 120.2
C6 N1 C1' O4' 53.6 238.2
C6 N1 C1' H1' 173.9 359.3
C4 C5 C6 N1 357.2 0.5
N1 C6 C5 H5 177.2 180.0
C5 C6 N1 H6 180.0 179.6
C2 N1 C1' C6 166.9 180.0
C1' N1 C2 N3 187.8 180.0
C1' N1 C2 O2 9.2 0.0
C1' N1 C6 C5 172.9 179.7
C1' N1 C6 H6 352.9 0.1
C2' C1' N1 O4' 241.1 242.0
C2' C1' N1 H1' 120.8 120.9
N1 C1' C2' C3' 156.8 121.5
N1 C1' C2' H2' 282.1 240.2
N1 C1' C2' H2'' 31.6 2.8
O4' C1' N1 H1' 239.7 239.0
N1 C1' O4' C4' 216.0 214.2
N3 C2 N1 C6 354.8 0.1
N3 C2 N1 C1' 187.8 180.0
N1 C2 N3 O2 181.4 180.0
C2 N3 C4 C5 1.2 0.3
C2 N3 C4 N4 179.5 180.0
O2 C2 N1 C6 176.2 180.0
O2 C2 N1 C1' 9.2 0.0
N1 C2 O2 N3 178.6 180.0
O2 C2 N3 C4 180.4 180.0
C4 N3 C2 O2 180.4 180.0
C5 C4 N3 N4 181.7 180.3
N3 C4 C5 C6 359.3 359.5
N3 C4 C5 H5 179.3 180.0
N3 C4 N4 HN41 180.0 0.1
N3 C4 N4 HN42 54.7 179.7
N1 C6 C5 C4 357.2 0.5
N3 C4 C5 N4 178.2 179.7
C5 C4 N4 HN41 358.3 179.8
C5 C4 N4 HN42 233.0 359.4
C6 C5 C4 H5 180.1 179.5
C4 C5 C6 H6 177.1 180.2
N3 C4 N4 C5 181.7 180.3
N4 C4 C5 C6 181.1 179.8
N4 C4 C5 H5 1.0 0.3
HN41 N4 C4 HN42 125.3 180.4
C5 C6 N1 C1' 172.9 179.7
N1 C6 C5 H6 180.0 180.4
C6 C5 C4 N4 181.1 179.8
C4 C5 C6 H5 180.0 180.5
H5 C5 C4 N4 1.0 0.3
C4 C5 H5 C6 180.1 179.5
H5 C5 C6 H6 357.2 359.7
H6 C6 N1 C1' 352.9 0.1
N1 C6 H6 C5 180.0 179.6
H6 C6 C5 H5 357.2 359.7
C4 N4 HN41 HN42 234.7 179.6
C4 N4 HN42 HN41 130.0 180.4
N1 C1' C2' O4' 122.7 119.6
N1 C1' C2' H1' 243.1 239.0
O4' C1' C2' H1' 120.4 119.5
C2' C1' O4' C4' 338.1 333.7
C3' C2' C1' H2' 234.7 241.3
C3' C2' C1' H2'' 125.3 118.6
C1' C2' C3' C4' 327.8 20.9
C1' C2' C3' H3'1 93.0 139.1
C1' C2' C3' H3'2 202.5 262.7
H2' C2' C1' H2'' 250.5 237.4
N1 C1' O4' C2' 237.9 240.4
N1 C1' O4' H1' 116.9 121.0
C2' C1' O4' H1' 239.0 240.6
O4' C1' C2' C3' 34.1 1.9
O4' C1' C2' H2' 159.4 120.7
O4' C1' C2' H2'' 268.8 243.3
C3' C4' O4' C1' 1.0 39.9
C1' O4' C4' C5' 124.9 158.6
C1' O4' C4' H4' 240.4 281.4
N1 C1' H1' C2' 120.9 121.0
N1 C1' H1' O4' 238.5 238.9
C2' C1' H1' O4' 117.6 117.9
H1' C1' C2' C3' 273.7 242.4
H1' C1' C2' H2' 39.0 1.2
H1' C1' C2' H2'' 148.4 123.8
H1' C1' O4' C4' 99.1 93.1
C3' C2' C1' O4' 34.1 1.9
C3' C2' C1' H1' 273.7 242.4
C1' C2' C3' H2' 125.3 118.8
C1' C2' C3' H2'' 234.7 241.4
H2' C2' C3' H2'' 109.4 122.6
C4' C3' C2' H3'1 234.7 241.8
C4' C3' C2' H3'2 125.3 118.2
C2' C3' C4' O4' 20.4 323.0
C2' C3' C4' C5' 257.9 204.3
C2' C3' C4' H4' 142.6 81.5
H3'1 C3' C2' H3'2 250.6 236.4
H2' C2' C1' O4' 159.4 120.7
H2' C2' C1' H1' 39.0 1.2
C1' C2' H2' C3' 241.4 245.2
C1' C2' H2' H2'' 120.7 122.6
C3' C2' H2' H2'' 239.3 237.5
H2' C2' C3' C4' 202.5 262.1
H2' C2' C3' H3'1 327.8 20.3
H2' C2' C3' H3'2 77.2 143.9
H2'' C2' C1' O4' 268.8 243.3
H2'' C2' C1' H1' 148.4 123.8
C1' C2' H2'' C3' 118.6 114.7
C1' C2' H2'' H2' 239.3 237.3
C3' C2' H2'' H2' 120.7 122.6
H2'' C2' C3' C4' 93.0 139.6
H2'' C2' C3' H3'1 218.3 257.8
H2'' C2' C3' H3'2 327.7 21.4
C1' O4' C4' C3' 1.0 39.9
C4' C3' C2' H2' 202.5 262.1
C4' C3' C2' H2'' 93.0 139.6
C2' C3' C4' H3'1 125.3 118.2
C2' C3' C4' H3'2 234.7 241.8
H3'1 C3' C4' H3'2 109.4 123.6
O4' C4' C3' C5' 122.5 118.7
O4' C4' C3' H4' 237.8 241.6
C5' C4' C3' H4' 115.3 122.8
C3' C4' C5' O5' 83.3 180.0
C3' C4' C5' H5' 208.6 300.0
C3' C4' C5' H5'' 318.0 59.9
H3'1 C3' C2' H2' 327.8 20.3
H3'1 C3' C2' H2'' 218.3 257.8
C2' C3' H3'1 C4' 240.8 247.3
C2' C3' H3'1 H3'2 120.4 123.7
C4' C3' H3'1 H3'2 239.6 236.4
H3'1 C3' C4' O4' 255.1 204.8
H3'1 C3' C4' C5' 132.6 86.1
H3'1 C3' C4' H4' 17.3 323.2
H3'2 C3' C2' H2' 77.2 143.9
H3'2 C3' C2' H2'' 327.7 21.4
C2' C3' H3'2 C4' 119.2 112.7
C2' C3' H3'2 H3'1 239.6 236.3
C4' C3' H3'2 H3'1 120.4 123.6
H3'2 C3' C4' O4' 145.7 81.2
H3'2 C3' C4' C5' 23.2 322.5
H3'2 C3' C4' H4' 267.9 199.7
C4' O4' C1' H1' 99.1 93.1
O4' C4' C3' H3'1 255.1 204.8
O4' C4' C3' H3'2 145.7 81.2
C3' C4' O4' C5' 236.1 241.3
C3' C4' O4' H4' 120.6 118.5
C5' C4' O4' H4' 244.5 237.2
O4' C4' C5' O5' 325.7 65.7
O4' C4' C5' H5' 91.0 185.7
O4' C4' C5' H5'' 200.4 305.6
C5' C4' C3' H3'1 132.6 86.1
C5' C4' C3' H3'2 23.2 322.5
C3' C4' C5' O4' 117.6 114.3
C3' C4' C5' H4' 239.6 237.1
O4' C4' C5' H4' 122.0 122.8
O5' C5' C4' H5' 234.7 240.0
O5' C5' C4' H5'' 125.3 120.1
C4' C5' O5' PA 199.6 180.0
H5' C5' C4' H5'' 250.5 240.1
H4' C4' C3' H3'1 17.3 323.2
H4' C4' C3' H3'2 267.9 199.7
C3' C4' H4' O4' 243.8 245.9
C3' C4' H4' C5' 122.6 122.9
O4' C4' H4' C5' 238.8 237.1
H4' C4' C5' O5' 203.6 302.9
H4' C4' C5' H5' 328.9 62.9
H4' C4' C5' H5'' 78.4 182.8
O5' C5' C4' H4' 203.6 302.9
C4' C5' O5' H5' 125.3 120.0
C4' C5' O5' H5'' 234.8 240.0
H5' C5' O5' H5'' 109.5 120.0
C5' O5' PA O1A 326.6 60.0
C5' O5' PA O2A 191.5 300.0
C5' O5' PA O3A 83.9 180.0
H5' C5' C4' H4' 328.9 62.9
C4' C5' H5' O5' 235.6 239.9
C4' C5' H5' H5'' 117.8 119.9
O5' C5' H5' H5'' 242.2 240.0
H5' C5' O5' PA 74.3 60.0
H5'' C5' C4' H4' 78.4 182.8
C4' C5' H5'' O5' 124.4 120.1
C4' C5' H5'' H5' 242.2 240.1
O5' C5' H5'' H5' 117.8 120.0
H5'' C5' O5' PA 324.9 300.0
PA O5' C5' H5' 74.3 60.0
PA O5' C5' H5'' 324.9 300.0
O1A PA O5' O2A 135.1 120.0
O1A PA O5' O3A 242.7 240.0
O2A PA O5' O3A 107.6 120.0
O5' PA O2A HOA2 180.0 300.0
O5' PA O3A PB 265.6 180.0
O5' PA O1A O2A 231.8 240.0
O5' PA O1A O3A 112.5 120.0
O2A PA O1A O3A 240.7 240.0
O1A PA O2A HOA2 50.3 180.0
O1A PA O3A PB 23.8 300.0
O5' PA O2A O1A 129.7 120.0
O5' PA O2A O3A 252.6 239.9
O1A PA O2A O3A 122.9 119.9
O2A PA O3A PB 154.0 59.9
O5' PA O3A O1A 241.7 240.0
O5' PA O3A O2A 111.5 120.0
O1A PA O3A O2A 229.8 240.1
O3A PA O2A HOA2 287.4 60.1
PA O3A PB O1B 138.2 60.0
PA O3A PB O2B 8.2 300.0
PA O3A PB O3B 251.4 180.0
HOA2 O2A PA O3A 287.4 60.1
O1B PB O3A O2B 130.0 120.0
O1B PB O3A O3B 246.9 240.0
O2B PB O3A O3B 116.9 120.0
O3A PB O2B HOB2 180.0 300.0
O3A PB O3B PG 89.6 180.0
O3A PB O1B O2B 235.2 240.0
O3A PB O1B O3B 105.8 120.0
O2B PB O1B O3B 230.6 240.1
O1B PB O2B HOB2 54.7 180.1
O1B PB O3B PG 203.4 300.0
O3A PB O2B O1B 125.3 120.0
O3A PB O2B O3B 253.0 239.9
O1B PB O2B O3B 127.7 120.0
O2B PB O3B PG 335.8 60.0
O3A PB O3B O1B 246.2 240.0
O3A PB O3B O2B 113.8 120.1
O1B PB O3B O2B 227.6 240.0
O3B PB O2B HOB2 287.0 60.1
PB O3B PG O1G 338.8 60.0
PB O3B PG O2G 105.8 180.0
PB O3B PG O3G 223.4 300.0
HOB2 O2B PB O3B 287.0 60.1
O1G PG O3B O2G 233.0 240.0
O1G PG O3B O3G 115.4 120.0
O2G PG O3B O3G 242.4 240.0
O3B PG O2G HOG2 180.0 180.0
O3B PG O3G HOG3 180.0 300.0
O3B PG O1G O2G 121.0 120.0
O3B PG O1G O3G 257.3 240.0
O2G PG O1G O3G 136.3 120.0
O1G PG O2G HOG2 299.9 300.0
O1G PG O3G HOG3 70.3 180.0
O3B PG O2G O1G 240.0 240.0
O3B PG O2G O3G 104.4 120.0
O1G PG O2G O3G 224.4 240.0
O2G PG O3G HOG3 292.5 60.0
O3B PG O3G O1G 109.8 120.0
O3B PG O3G O2G 247.6 240.0
O1G PG O3G O2G 137.8 120.0
O3G PG O2G HOG2 75.6 60.0
HOG2 O2G PG O3G 75.6 60.0