PDB Chemical Component DCP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DCP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.421 1.345
N1 C6 1.366 1.363
N1 C1' 1.499 1.464
C2 N3 1.366 1.332
C2 O2 1.231 1.221
N3 C4 1.342 1.326
C4 C5 1.443 1.409
C4 N4 1.338 1.376
C5 C6 1.353 1.354
C5 H5 1.103 1.081
C6 H6 1.102 1.080
N4 HN41 1.021 0.970
N4 HN42 1.021 0.970
C1' C2' 1.548 1.541
C1' O4' 1.433 1.438
C1' H1' 1.114 1.091
C2' C3' 1.538 1.548
C2' H2'1 1.115 1.090
C2' H2'2 1.115 1.090
C3' C4' 1.522 1.549
C3' O3' 1.446 1.429
C3' H3' 1.115 1.090
C4' O4' 1.432 1.446
C4' C5' 1.520 1.530
C4' H4' 1.115 1.090
O3' HO3' 0.950 0.967
C5' O5' 1.427 1.428
C5' H5'1 1.114 1.089
C5' H5'2 1.115 1.091
O5' PA 1.637 1.609
PA O1A 1.490 1.480
PA O2A 1.490 1.610
PA O3A 1.601 1.610
O2A HOA2 0.950 0.967
O3A PB 1.625 1.609
PB O1B 1.498 1.479
PB O2B 1.489 1.609
PB O3B 1.620 1.610
O2B HOB2 0.950 0.966
O3B PG 1.605 1.610
PG O1G 1.492 1.479
PG O2G 1.491 1.610
PG O3G 1.484 1.609
O2G HOG2 0.950 0.966
O3G HOG3 0.950 0.966

Bond Angles for DCP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 120.2 120.3
C2 N1 C1' 123.9 119.8
N1 C2 N3 118.5 121.1
N1 C2 O2 123.6 119.5
C6 N1 C1' 115.7 119.9
N1 C6 C5 121.6 119.3
N1 C6 H6 119.7 120.3
N1 C1' C2' 120.3 109.9
N1 C1' O4' 112.8 109.9
N1 C1' H1' 97.6 109.9
N3 C2 O2 117.9 119.4
C2 N3 C4 121.1 120.7
N3 C4 C5 120.9 119.6
N3 C4 N4 119.7 120.2
C5 C4 N4 119.4 120.2
C4 C5 C6 117.6 119.0
C4 C5 H5 124.2 120.5
C4 N4 HN41 119.7 120.0
C4 N4 HN42 108.6 120.0
C6 C5 H5 118.2 120.5
C5 C6 H6 118.7 120.4
HN41 N4 HN42 108.5 120.0
C2' C1' O4' 106.2 107.4
C2' C1' H1' 105.6 109.8
C1' C2' C3' 103.3 104.2
C1' C2' H2'1 114.5 110.5
C1' C2' H2'2 114.5 110.5
O4' C1' H1' 114.3 109.9
C1' O4' C4' 100.7 106.9
C3' C2' H2'1 114.6 110.5
C3' C2' H2'2 114.6 110.5
C2' C3' C4' 101.2 102.1
C2' C3' O3' 113.9 110.9
C2' C3' H3' 112.9 110.9
H2'1 C2' H2'2 95.9 110.5
C4' C3' O3' 111.8 110.9
C4' C3' H3' 115.0 110.9
C3' C4' O4' 105.2 103.6
C3' C4' C5' 114.0 110.7
C3' C4' H4' 110.4 110.6
O3' C3' H3' 102.6 110.8
C3' O3' HO3' 113.9 106.8
O4' C4' C5' 112.4 110.7
O4' C4' H4' 112.0 110.5
C5' C4' H4' 102.9 110.5
C4' C5' O5' 111.1 109.5
C4' C5' H5'1 111.6 109.5
C4' C5' H5'2 111.6 109.4
O5' C5' H5'1 111.6 109.5
O5' C5' H5'2 111.6 109.4
C5' O5' PA 125.6 106.8
H5'1 C5' H5'2 98.8 109.5
O5' PA O1A 109.5 109.5
O5' PA O2A 110.9 109.5
O5' PA O3A 98.1 109.5
O1A PA O2A 118.7 109.5
O1A PA O3A 107.2 109.4
O2A PA O3A 110.4 109.5
PA O2A HOA2 110.8 106.8
PA O3A PB 126.7 106.8
O3A PB O1B 112.1 109.5
O3A PB O2B 106.5 109.4
O3A PB O3B 94.3 109.4
O1B PB O2B 120.9 109.5
O1B PB O3B 108.8 109.4
O2B PB O3B 111.1 109.4
PB O2B HOB2 106.5 106.8
PB O3B PG 129.7 106.8
O3B PG O1G 101.4 109.5
O3B PG O2G 107.7 109.5
O3B PG O3G 101.0 109.5
O1G PG O2G 114.6 109.5
O1G PG O3G 115.0 109.5
O2G PG O3G 114.8 109.5
PG O2G HOG2 107.7 106.8
PG O3G HOG3 101.1 106.9

Torsion Angles for DCP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 N1 C2 C1' 174.5 180.0
C2 N1 C6 C5 359.6 359.7
C2 N1 C6 H6 179.6 179.9
C2 N1 C1' C2' 323.4 300.3
C2 N1 C1' O4' 89.9 58.3
C2 N1 C1' H1' 210.3 179.3
N3 C2 N1 O2 180.0 180.0
N1 C2 N3 C4 2.2 360.0
C2 N1 C6 C1' 185.0 180.0
C6 N1 C2 N3 359.8 0.0
C6 N1 C2 O2 179.7 180.0
C6 N1 C1' C2' 148.6 120.2
C6 N1 C1' O4' 275.1 238.3
C6 N1 C1' H1' 35.6 359.3
C4 C5 C6 N1 359.2 0.6
N1 C6 C5 H5 179.2 180.0
C5 C6 N1 H6 180.0 179.7
C2 N1 C1' C6 174.8 180.0
C1' N1 C2 N3 185.2 180.0
C1' N1 C2 O2 5.2 360.0
C1' N1 C6 C5 174.6 179.7
C1' N1 C6 H6 354.6 360.0
C2' C1' N1 O4' 233.5 242.0
C2' C1' N1 H1' 113.0 120.9
N1 C1' C2' C3' 147.7 121.5
N1 C1' C2' H2'1 273.0 240.1
N1 C1' C2' H2'2 22.4 2.8
O4' C1' N1 H1' 239.6 239.0
N1 C1' O4' C4' 185.0 214.2
N3 C2 N1 C6 359.8 0.0
N3 C2 N1 C1' 185.2 180.0
N1 C2 N3 O2 180.0 180.0
C2 N3 C4 C5 356.5 0.2
C2 N3 C4 N4 177.0 180.0
O2 C2 N1 C6 179.7 180.0
O2 C2 N1 C1' 5.2 360.0
N1 C2 O2 N3 180.0 180.0
O2 C2 N3 C4 182.2 180.0
C4 N3 C2 O2 182.2 180.0
C5 C4 N3 N4 179.5 180.3
N3 C4 C5 C6 2.8 359.5
N3 C4 C5 H5 182.8 180.0
N3 C4 N4 HN41 180.0 0.0
N3 C4 N4 HN42 54.7 179.7
N1 C6 C5 C4 359.2 0.6
N3 C4 C5 N4 180.5 179.7
C5 C4 N4 HN41 0.5 179.7
C5 C4 N4 HN42 235.2 359.4
C6 C5 C4 H5 180.0 179.4
C4 C5 C6 H6 179.1 180.3
N3 C4 N4 C5 179.5 180.3
N4 C4 C5 C6 182.3 179.8
N4 C4 C5 H5 2.3 0.3
HN41 N4 C4 HN42 125.3 180.3
C5 C6 N1 C1' 174.6 179.7
N1 C6 C5 H6 180.0 180.3
C6 C5 C4 N4 182.3 179.8
C4 C5 C6 H5 180.0 180.6
H5 C5 C4 N4 2.3 0.3
C4 C5 H5 C6 180.0 179.4
H5 C5 C6 H6 359.2 359.7
H6 C6 N1 C1' 354.6 360.0
N1 C6 H6 C5 180.0 179.7
H6 C6 C5 H5 359.2 359.7
C4 N4 HN41 HN42 234.7 179.7
C4 N4 HN42 HN41 131.6 180.3
N1 C1' C2' O4' 129.5 119.6
N1 C1' C2' H1' 251.2 239.0
O4' C1' C2' H1' 121.7 119.4
C2' C1' O4' C4' 318.7 333.7
C3' C2' C1' H2'1 234.7 241.3
C3' C2' C1' H2'2 125.3 118.7
C1' C2' C3' C4' 10.9 20.9
C1' C2' C3' O3' 131.0 139.1
C1' C2' C3' H3' 247.5 262.7
H2'1 C2' C1' H2'2 250.6 237.3
N1 C1' O4' C2' 226.3 240.4
N1 C1' O4' H1' 110.3 121.0
C2' C1' O4' H1' 244.1 240.6
O4' C1' C2' C3' 18.2 1.9
O4' C1' C2' H2'1 143.5 120.6
O4' C1' C2' H2'2 252.9 243.2
C3' C4' O4' C1' 49.5 39.9
C1' O4' C4' C5' 174.2 158.5
C1' O4' C4' H4' 289.5 281.3
N1 C1' H1' C2' 124.4 121.0
N1 C1' H1' O4' 240.7 239.0
C2' C1' H1' O4' 116.3 117.9
H1' C1' C2' C3' 256.5 242.5
H1' C1' C2' H2'1 21.8 1.1
H1' C1' C2' H2'2 131.2 123.8
H1' C1' O4' C4' 74.6 93.1
C3' C2' C1' O4' 18.2 1.9
C3' C2' C1' H1' 256.5 242.5
C1' C2' C3' H2'1 125.2 118.7
C1' C2' C3' H2'2 234.8 241.3
H2'1 C2' C3' H2'2 109.5 122.6
C4' C3' C2' O3' 239.9 241.8
C4' C3' C2' H3' 123.4 118.2
C2' C3' C4' O4' 322.8 323.0
C2' C3' C4' C5' 199.1 204.3
C2' C3' C4' H4' 83.9 81.5
O3' C3' C2' H3' 243.5 236.4
C2' C3' O3' HO3' 180.0 61.5
H2'1 C2' C1' O4' 143.5 120.6
H2'1 C2' C1' H1' 21.8 1.1
C1' C2' H2'1 C3' 240.9 245.3
C1' C2' H2'1 H2'2 120.4 122.6
C3' C2' H2'1 H2'2 239.5 237.4
H2'1 C2' C3' C4' 245.6 262.2
H2'1 C2' C3' O3' 5.7 20.4
H2'1 C2' C3' H3' 122.2 144.0
H2'2 C2' C1' O4' 252.9 243.2
H2'2 C2' C1' H1' 131.2 123.8
C1' C2' H2'2 C3' 119.1 114.7
C1' C2' H2'2 H2'1 239.6 237.3
C3' C2' H2'2 H2'1 120.5 122.6
H2'2 C2' C3' C4' 136.1 139.6
H2'2 C2' C3' O3' 256.2 257.8
H2'2 C2' C3' H3' 12.7 21.4
C1' O4' C4' C3' 49.5 39.9
C4' C3' C2' H2'1 245.6 262.2
C4' C3' C2' H2'2 136.1 139.6
C2' C3' C4' O3' 121.6 118.2
C2' C3' C4' H3' 238.0 241.8
O3' C3' C4' H3' 116.4 123.6
C4' C3' O3' HO3' 293.9 174.2
O4' C4' C3' C5' 123.6 118.7
O4' C4' C3' H4' 238.9 241.6
C5' C4' C3' H4' 115.3 122.8
C3' C4' C5' O5' 167.0 179.9
C3' C4' C5' H5'1 292.3 300.0
C3' C4' C5' H5'2 41.8 60.0
O3' C3' C2' H2'1 5.7 20.4
O3' C3' C2' H2'2 256.2 257.8
C2' C3' O3' C4' 246.1 247.3
C2' C3' O3' H3' 122.3 123.6
C4' C3' O3' H3' 236.3 236.4
O3' C3' C4' O4' 201.1 204.8
O3' C3' C4' C5' 77.5 86.1
O3' C3' C4' H4' 322.2 323.3
H3' C3' C2' H2'1 122.2 144.0
H3' C3' C2' H2'2 12.7 21.4
C2' C3' H3' C4' 115.4 112.8
C2' C3' H3' O3' 236.9 236.4
C4' C3' H3' O3' 121.6 123.6
H3' C3' C4' O4' 84.7 81.3
H3' C3' C4' C5' 321.1 322.5
H3' C3' C4' H4' 205.8 199.7
H3' C3' O3' HO3' 57.6 297.9
C4' O4' C1' H1' 74.6 93.1
O4' C4' C3' O3' 201.1 204.8
O4' C4' C3' H3' 84.7 81.3
C3' C4' O4' C5' 235.3 241.3
C3' C4' O4' H4' 120.0 118.5
C5' C4' O4' H4' 244.6 237.2
O4' C4' C5' O5' 47.3 65.7
O4' C4' C5' H5'1 172.6 185.7
O4' C4' C5' H5'2 282.1 305.7
C5' C4' C3' O3' 77.5 86.1
C5' C4' C3' H3' 321.1 322.5
C3' C4' C5' O4' 119.7 114.3
C3' C4' C5' H4' 240.4 237.1
O4' C4' C5' H4' 120.8 122.8
O5' C5' C4' H5'1 234.7 239.9
O5' C5' C4' H5'2 125.2 119.9
C4' C5' O5' PA 48.4 180.0
H5'1 C5' C4' H5'2 250.5 240.0
H4' C4' C3' O3' 322.2 323.3
H4' C4' C3' H3' 205.8 199.7
C3' C4' H4' O4' 243.1 245.9
C3' C4' H4' C5' 122.1 122.9
O4' C4' H4' C5' 239.0 237.0
H4' C4' C5' O5' 286.6 302.8
H4' C4' C5' H5'1 51.8 62.9
H4' C4' C5' H5'2 161.4 182.9
HO3' O3' C3' H3' 57.6 297.9
O5' C5' C4' H4' 286.6 302.8
C4' C5' O5' H5'1 125.3 120.1
C4' C5' O5' H5'2 234.8 240.1
H5'1 C5' O5' H5'2 109.5 120.0
C5' O5' PA O1A 272.4 300.0
C5' O5' PA O2A 45.3 60.0
C5' O5' PA O3A 160.9 180.0
H5'1 C5' C4' H4' 51.8 62.9
C4' C5' H5'1 O5' 235.1 239.9
C4' C5' H5'1 H5'2 117.5 119.9
O5' C5' H5'1 H5'2 242.5 240.0
H5'1 C5' O5' PA 283.1 59.9
H5'2 C5' C4' H4' 161.4 182.9
C4' C5' H5'2 O5' 124.9 120.0
C4' C5' H5'2 H5'1 242.5 240.0
O5' C5' H5'2 H5'1 117.5 120.0
H5'2 C5' O5' PA 173.6 299.9
PA O5' C5' H5'1 283.1 59.9
PA O5' C5' H5'2 173.6 299.9
O1A PA O5' O2A 227.1 240.0
O1A PA O5' O3A 111.6 120.0
O2A PA O5' O3A 244.4 240.0
O5' PA O2A HOA2 180.0 60.0
O5' PA O3A PB 277.0 180.0
O5' PA O1A O2A 128.7 120.0
O5' PA O1A O3A 254.5 240.0
O2A PA O1A O3A 125.9 120.0
O1A PA O2A HOA2 308.0 180.0
O1A PA O3A PB 163.6 60.0
O5' PA O2A O1A 232.0 240.0
O5' PA O2A O3A 107.7 120.1
O1A PA O2A O3A 235.7 240.0
O2A PA O3A PB 33.0 300.0
O5' PA O3A O1A 113.4 120.0
O5' PA O3A O2A 244.1 240.0
O1A PA O3A O2A 130.7 120.0
O3A PA O2A HOA2 72.3 299.9
PA O3A PB O1B 13.3 300.0
PA O3A PB O2B 147.6 60.1
PA O3A PB O3B 261.1 180.0
HOA2 O2A PA O3A 72.3 299.9
O1B PB O3A O2B 225.8 239.9
O1B PB O3A O3B 112.3 120.0
O2B PB O3A O3B 246.5 240.1
O3A PB O2B HOB2 180.0 60.0
O3A PB O3B PG 225.4 180.0
O3A PB O1B O2B 126.8 120.0
O3A PB O1B O3B 257.1 240.0
O2B PB O1B O3B 130.3 120.0
O1B PB O2B HOB2 309.3 180.1
O1B PB O3B PG 110.4 60.0
O3A PB O2B O1B 230.7 239.9
O3A PB O2B O3B 101.4 119.9
O1B PB O2B O3B 230.7 240.0
O2B PB O3B PG 334.9 300.0
O3A PB O3B O1B 115.1 120.0
O3A PB O3B O2B 250.5 240.1
O1B PB O3B O2B 135.4 120.1
O3B PB O2B HOB2 78.5 300.1
PB O3B PG O1G 245.6 60.0
PB O3B PG O2G 6.3 180.0
PB O3B PG O3G 126.9 300.0
HOB2 O2B PB O3B 78.5 300.1
O1G PG O3B O2G 239.3 240.0
O1G PG O3B O3G 118.6 120.0
O2G PG O3B O3G 239.3 240.0
O3B PG O2G HOG2 180.0 179.9
O3B PG O3G HOG3 180.0 300.0
O3B PG O1G O2G 115.7 120.0
O3B PG O1G O3G 252.0 240.0
O2G PG O1G O3G 136.3 120.0
O1G PG O2G HOG2 291.9 299.9
O1G PG O3G HOG3 71.8 180.0
O3B PG O2G O1G 248.0 240.0
O3B PG O2G O3G 111.6 120.0
O1G PG O2G O3G 223.6 240.0
O2G PG O3G HOG3 295.6 60.0
O3B PG O3G O1G 108.3 120.0
O3B PG O3G O2G 244.5 240.0
O1G PG O3G O2G 136.2 120.0
O3G PG O2G HOG2 68.3 60.0
HOG2 O2G PG O3G 68.3 60.0