PDB Chemical Component DCF

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DCF

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.319 1.301
N1 C9 1.396 1.347
C2 N3 1.353 1.356
C2 H2 1.103 1.079
N3 C10 1.409 1.386
N3 C1S 1.472 1.464
C9 C10 1.360 1.353
C9 C8 1.478 1.503
C10 N4 1.379 1.354
N4 C5 1.283 1.275
C5 N6 1.340 1.349
C5 H5 1.103 1.080
N6 C7 1.459 1.449
N6 HN6 1.020 0.970
C7 C8 1.508 1.515
C7 H71 1.115 1.090
C7 H72 1.116 1.090
C8 O8 1.604 1.429
C8 H8 1.115 1.090
O8 HO8 0.950 0.967
C2S C3S 1.519 1.550
C2S C1S 1.555 1.540
C2S H2S1 1.115 1.089
C2S H2S2 1.114 1.090
C3S O3S 1.432 1.428
C3S C4S 1.513 1.549
C3S H3S 1.116 1.091
O3S HO3 0.950 0.967
O5S C5S 1.415 1.430
O5S HO5 0.951 0.967
C5S C4S 1.528 1.529
C5S H5S1 1.115 1.089
C5S H5S2 1.115 1.089
C4S O4S 1.435 1.444
C4S H4S 1.114 1.090
O4S C1S 1.444 1.437
C1S H1S 1.114 1.090

Bond Angles for DCF

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C9 106.1 109.7
N1 C2 N3 111.4 108.7
N1 C2 H2 123.1 125.6
N1 C9 C10 109.8 108.0
N1 C9 C8 120.4 123.4
N3 C2 H2 125.4 125.6
C2 N3 C10 107.2 107.1
C2 N3 C1S 126.9 126.4
C10 N3 C1S 124.8 126.4
N3 C10 C9 105.4 106.4
N3 C10 N4 117.3 122.9
N3 C1S C2S 116.5 110.1
N3 C1S O4S 106.7 109.9
N3 C1S H1S 105.9 109.8
C10 C9 C8 128.1 128.6
C9 C10 N4 135.4 130.8
C9 C8 C7 112.3 111.8
C9 C8 O8 114.8 109.0
C9 C8 H8 103.2 109.0
C10 N4 C5 122.9 129.4
N4 C5 N6 129.2 126.4
N4 C5 H5 112.8 116.8
N6 C5 H5 118.0 116.8
C5 N6 C7 127.6 124.4
C5 N6 HN6 105.9 117.8
C7 N6 HN6 105.8 117.8
N6 C7 C8 113.0 111.3
N6 C7 H71 111.0 109.0
N6 C7 H72 111.0 109.1
C8 C7 H71 110.9 109.1
C8 C7 H72 110.9 109.2
C7 C8 O8 108.2 108.9
C7 C8 H8 110.4 109.0
H71 C7 H72 99.4 109.1
O8 C8 H8 107.7 109.0
C8 O8 HO8 114.8 106.8
C3S C2S C1S 103.4 104.2
C3S C2S H2S1 114.5 110.3
C3S C2S H2S2 114.5 110.6
C2S C3S O3S 111.2 110.9
C2S C3S C4S 102.5 102.0
C2S C3S H3S 113.3 110.9
C1S C2S H2S1 114.5 110.5
C1S C2S H2S2 114.5 110.4
C2S C1S O4S 107.1 107.3
C2S C1S H1S 105.5 109.9
H2S1 C2S H2S2 96.0 110.6
O3S C3S C4S 110.8 111.2
O3S C3S H3S 105.4 110.8
C3S O3S HO3 111.2 106.8
C4S C3S H3S 113.8 110.7
C3S C4S C5S 111.9 110.6
C3S C4S O4S 105.5 103.6
C3S C4S H4S 111.8 110.6
C5S O5S HO5 112.0 106.8
O5S C5S C4S 111.9 109.4
O5S C5S H5S1 111.3 109.4
O5S C5S H5S2 111.3 109.4
C4S C5S H5S1 111.4 109.5
C4S C5S H5S2 111.3 109.5
C5S C4S O4S 112.9 110.7
C5S C4S H4S 104.2 110.5
H5S1 C5S H5S2 99.1 109.6
O4S C4S H4S 110.7 110.6
C4S O4S C1S 107.6 107.0
O4S C1S H1S 115.5 109.8

Torsion Angles for DCF

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C9 C10 0.3 0.2
C2 N1 C9 C8 166.6 180.6
N3 C2 N1 H2 180.0 179.9
N1 C2 N3 C10 0.3 359.9
N1 C2 N3 C1S 168.2 179.6
C9 N1 C2 N3 359.6 359.9
C9 N1 C2 H2 179.7 180.0
N3 C10 C9 N1 359.9 359.8
C10 C9 N1 C8 193.7 179.6
N1 C9 C10 N4 162.6 179.0
N1 C9 C8 C7 164.7 212.0
N1 C9 C8 O8 288.8 332.5
N1 C9 C8 H8 45.8 91.4
N3 C2 N1 C9 359.6 359.9
N1 C2 N3 H2 180.0 180.1
C10 N3 C2 C1S 192.0 180.4
C2 N3 C10 C9 359.9 0.2
C2 N3 C10 N4 193.5 180.9
C2 N3 C1S C2S 316.9 270.7
C2 N3 C1S O4S 76.4 28.7
C2 N3 C1S H1S 200.0 149.6
H2 C2 N1 C9 179.7 180.0
N1 C2 H2 N3 180.0 179.9
H2 C2 N3 C10 180.2 179.8
H2 C2 N3 C1S 348.2 359.5
N1 C9 C10 N3 359.9 359.8
C10 N3 C2 H2 180.2 179.8
C2 N3 C10 C1S 168.3 179.6
C10 N3 C1S C2S 122.9 90.3
C10 N3 C1S O4S 242.4 208.2
C10 N3 C1S H1S 6.0 329.1
N3 C10 C9 C8 194.9 179.3
C9 C10 N3 N4 166.4 179.3
N3 C10 N4 C5 169.3 177.9
C1S N3 C2 H2 348.2 359.5
C2 N3 C1S C10 194.0 180.4
C1S N3 C10 C9 191.6 180.6
C1S N3 C10 N4 25.2 1.2
C3S C2S C1S N3 109.4 121.7
N3 C1S C2S H2S1 344.2 240.2
N3 C1S C2S H2S2 234.7 2.9
C2S C1S N3 O4S 240.4 242.0
C2S C1S N3 H1S 116.9 121.1
C4S O4S C1S N3 220.8 213.9
O4S C1S N3 H1S 236.4 239.1
N1 C9 C10 C8 165.0 180.5
C9 C10 N3 C1S 191.6 180.6
N3 C10 C9 N4 197.3 180.8
C10 C9 C8 C7 328.3 32.5
C10 C9 C8 O8 92.4 153.0
C10 C9 C8 H8 209.4 271.9
C9 C10 N4 C5 8.1 358.7
N1 C9 C8 C10 196.4 179.5
C8 C9 C10 N4 357.6 358.5
N6 C7 C8 C9 61.9 294.2
C9 C8 C7 H71 296.7 54.6
C9 C8 C7 H72 187.2 173.7
C7 C8 C9 O8 235.9 239.5
C7 C8 C9 H8 119.0 120.6
O8 C8 C9 H8 243.1 241.1
C9 C8 O8 HO8 179.9 180.0
N4 C10 N3 C1S 25.2 1.2
N3 C10 N4 C9 161.2 179.1
N4 C10 C9 C8 357.6 358.5
C10 N4 C5 N6 355.3 1.7
C10 N4 C5 H5 175.3 181.8
N6 C5 N4 H5 180.0 179.9
N4 C5 N6 C7 32.3 324.0
N4 C5 N6 HN6 267.1 144.1
N4 C5 N6 H5 180.0 180.1
C7 N6 C5 HN6 125.2 179.9
C5 N6 C7 C8 293.0 73.5
C5 N6 C7 H71 58.3 313.1
C5 N6 C7 H72 167.8 194.1
N4 C5 H5 N6 180.0 180.0
H5 C5 N6 C7 212.3 143.9
H5 C5 N6 HN6 87.1 324.0
C9 C8 C7 N6 61.9 294.2
C7 N6 C5 H5 212.3 143.9
C5 N6 C7 HN6 234.8 180.1
C8 C7 N6 H71 234.8 120.4
C8 C7 N6 H72 125.2 239.5
N6 C7 C8 O8 294.2 173.6
N6 C7 C8 H8 176.6 54.8
H71 C7 N6 H72 250.5 119.1
HN6 N6 C5 H5 87.1 324.0
C5 N6 HN6 C7 137.7 179.9
HN6 N6 C7 C8 58.3 253.4
HN6 N6 C7 H71 183.5 133.0
HN6 N6 C7 H72 293.0 14.0
C9 C8 C7 O8 127.7 120.6
C9 C8 C7 H8 245.4 239.4
C8 C7 N6 HN6 58.3 253.4
N6 C7 C8 H71 125.3 239.6
N6 C7 C8 H72 234.7 120.5
H71 C7 C8 H72 109.4 240.9
O8 C8 C7 H8 117.7 118.8
C7 C8 O8 HO8 306.2 302.3
H71 C7 N6 HN6 183.5 133.0
N6 C7 H71 C8 233.6 121.8
N6 C7 H71 H72 116.8 240.9
C8 C7 H71 H72 243.3 119.2
H71 C7 C8 O8 169.0 294.0
H71 C7 C8 H8 51.3 175.2
H72 C7 N6 HN6 293.0 14.0
N6 C7 H72 C8 126.4 238.1
N6 C7 H72 H71 243.2 119.0
C8 C7 H72 H71 116.7 240.9
H72 C7 C8 O8 59.5 53.1
H72 C7 C8 H8 301.9 294.3
C9 C8 O8 C7 233.7 237.7
C9 C8 O8 H8 114.3 118.9
O8 C8 C7 H71 169.0 294.0
O8 C8 C7 H72 59.5 53.1
C7 C8 O8 H8 240.6 241.2
C9 C8 H8 C7 120.3 122.3
C9 C8 H8 O8 238.2 241.1
H8 C8 C7 H71 51.3 175.2
H8 C8 C7 H72 301.9 294.3
C7 C8 H8 O8 118.0 118.8
H8 C8 O8 HO8 65.6 61.1
HO8 O8 C8 H8 65.6 61.1
N3 C1S C2S C3S 109.4 121.7
C1S C2S C3S H2S1 234.8 118.7
C1S C2S C3S H2S2 125.3 241.3
C3S C2S C1S O4S 350.1 2.1
C3S C2S C1S H1S 226.5 242.8
H2S1 C2S C3S H2S2 250.5 122.6
O3S C3S C2S C4S 118.4 118.5
O3S C3S C2S H3S 241.4 236.4
C2S C3S O3S HO3 180.0 61.4
C4S C3S C2S H3S 123.0 118.0
C2S C3S C4S C5S 199.0 204.6
C2S C3S C4S O4S 322.2 323.2
C2S C3S C4S H4S 82.6 81.8
N3 C1S C2S O4S 119.3 119.6
N3 C1S C2S H1S 242.9 238.9
C3S C2S C1S H2S1 125.2 241.4
C3S C2S C1S H2S2 234.7 118.8
C1S C2S C3S O3S 146.5 139.2
C1S C2S C3S C4S 28.1 20.7
C1S C2S C3S H3S 265.1 262.7
H2S1 C2S C1S H2S2 109.5 237.3
C4S O4S C1S C2S 346.3 333.6
O4S C1S C2S H1S 123.6 119.4
C3S C2S H2S1 C1S 240.8 114.8
C3S C2S H2S1 H2S2 120.4 237.4
H2S1 C2S C3S O3S 271.7 20.5
H2S1 C2S C3S C4S 153.3 262.0
H2S1 C2S C3S H3S 30.3 144.0
C1S C2S H2S1 H2S2 239.6 122.6
H2S1 C2S C1S O4S 224.9 120.7
H2S1 C2S C1S H1S 101.3 1.3
C3S C2S H2S2 C1S 119.2 245.1
C3S C2S H2S2 H2S1 239.6 122.5
H2S2 C2S C3S O3S 21.2 257.8
H2S2 C2S C3S C4S 262.8 139.4
H2S2 C2S C3S H3S 139.8 21.4
C1S C2S H2S2 H2S1 120.4 237.4
H2S2 C2S C1S O4S 115.4 243.3
H2S2 C2S C1S H1S 351.8 124.0
O3S C3S C2S C1S 146.5 139.2
O3S C3S C2S H2S1 271.7 20.5
O3S C3S C2S H2S2 21.2 257.8
C2S C3S O3S C4S 246.7 247.2
C2S C3S O3S H3S 123.2 123.6
C4S C3S O3S H3S 236.5 236.4
O3S C3S C4S C5S 80.3 86.3
O3S C3S C4S O4S 203.5 205.0
O3S C3S C4S H4S 323.9 323.5
C4S C3S C2S C1S 28.1 20.7
C4S C3S C2S H2S1 153.3 262.0
C4S C3S C2S H2S2 262.8 139.4
C2S C3S C4S O3S 118.7 118.3
C2S C3S C4S H3S 237.3 241.9
O3S C3S C4S H3S 118.6 123.6
C4S C3S O3S HO3 293.3 174.2
O5S C5S C4S C3S 59.2 177.8
C3S C4S C5S H5S1 294.0 57.9
C3S C4S C5S H5S2 184.5 297.8
C5S C4S C3S O4S 236.8 241.3
C5S C4S C3S H4S 116.4 122.8
O4S C4S C3S H4S 239.6 241.5
C3S C4S O4S C1S 32.4 39.9
H3S C3S C2S C1S 265.1 262.7
H3S C3S C2S H2S1 30.3 144.0
H3S C3S C2S H2S2 139.8 21.4
C2S C3S H3S O3S 238.1 236.4
C2S C3S H3S C4S 116.6 112.5
O3S C3S H3S C4S 238.4 236.2
H3S C3S O3S HO3 56.7 297.8
H3S C3S C4S C5S 321.8 322.7
H3S C3S C4S O4S 85.0 81.3
H3S C3S C4S H4S 205.3 199.8
HO3 O3S C3S C4S 293.3 174.2
HO3 O3S C3S H3S 56.7 297.8
C3S C4S C5S O5S 59.2 177.8
C4S C5S O5S H5S1 234.7 240.0
C4S C5S O5S H5S2 125.3 120.0
O5S C5S C4S O4S 300.3 63.5
O5S C5S C4S H4S 180.2 300.7
H5S1 C5S O5S H5S2 250.5 240.0
HO5 O5S C5S C4S 180.0 180.0
HO5 O5S C5S H5S1 305.3 300.0
HO5 O5S C5S H5S2 54.7 60.0
C5S C4S C3S H3S 321.8 322.7
C3S C4S C5S O4S 118.9 114.3
C3S C4S C5S H4S 239.1 237.1
C4S C5S O5S HO5 180.0 180.0
O5S C5S C4S H5S1 125.2 119.9
O5S C5S C4S H5S2 234.8 240.1
H5S1 C5S C4S H5S2 109.5 120.2
O4S C4S C5S H4S 120.1 122.9
C5S C4S O4S C1S 154.9 158.5
H5S1 C5S O5S HO5 305.3 300.0
O5S C5S H5S1 C4S 234.4 240.1
O5S C5S H5S1 H5S2 117.2 119.9
C4S C5S H5S1 H5S2 242.7 239.9
H5S1 C5S C4S O4S 175.1 303.6
H5S1 C5S C4S H4S 54.9 180.8
H5S2 C5S O5S HO5 54.7 60.0
O5S C5S H5S2 C4S 125.6 120.0
O5S C5S H5S2 H5S1 242.8 240.1
C4S C5S H5S2 H5S1 117.3 120.1
H5S2 C5S C4S O4S 65.5 183.5
H5S2 C5S C4S H4S 305.4 60.6
N3 C1S O4S C4S 220.8 213.9
C2S C1S O4S C4S 346.3 333.6
O4S C4S C3S H3S 85.0 81.3
C3S C4S O4S C5S 237.5 241.4
C3S C4S O4S H4S 121.1 118.5
O4S C4S C5S H5S1 175.1 303.6
O4S C4S C5S H5S2 65.5 183.5
C5S C4S O4S H4S 243.6 237.2
C4S O4S C1S H1S 103.4 93.0
H4S C4S C3S H3S 205.3 199.8
C3S C4S H4S C5S 121.0 122.9
C3S C4S H4S O4S 242.7 245.8
H4S C4S C5S H5S1 54.9 180.8
H4S C4S C5S H5S2 305.4 60.6
C5S C4S H4S O4S 121.7 122.9
H4S C4S O4S C1S 271.3 281.3
N3 C1S O4S C2S 234.6 240.3
N3 C1S O4S H1S 117.4 120.9
O4S C1S C2S H2S1 224.9 120.7
O4S C1S C2S H2S2 115.4 243.3
C2S C1S O4S H1S 242.8 240.6
C1S O4S C4S H4S 271.3 281.3
N3 C1S H1S C2S 124.1 121.2
N3 C1S H1S O4S 242.2 239.0
H1S C1S C2S H2S1 101.3 1.3
H1S C1S C2S H2S2 351.8 124.0
C2S C1S H1S O4S 118.1 117.8