PDB Chemical Component DCD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DCD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C5	C3	1.532	1.529
C5	H5C1	1.115	1.090
C5	H5C2	1.116	1.090
C5	H5C3	1.115	1.090
C3	N1	1.455	1.465
C3	H3C1	1.115	1.090
C3	H3C2	1.116	1.090
N1	C1	1.347	1.346
N1	C2	1.461	1.464
C1	S2	1.628	1.712
C1	S1	1.628	1.761
S1	HS	0.950	1.409
C2	C4	1.523	1.529
C2	H2C1	1.115	1.090
C2	H2C2	1.114	1.090
C4	H4C1	1.115	1.090
C4	H4C2	1.115	1.090
C4	H4C3	1.114	1.090

Bond Angles for DCD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C3	C5	H5C1	110.4	109.5
C3	C5	H5C2	111.9	109.4
C3	C5	H5C3	111.9	109.5
C5	C3	N1	110.4	109.5
C5	C3	H3C1	111.9	109.5
C5	C3	H3C2	111.9	109.4
H5C1	C5	H5C2	111.9	109.4
H5C1	C5	H5C3	111.9	109.5
H5C2	C5	H5C3	98.5	109.4
N1	C3	H3C1	111.9	109.5
N1	C3	H3C2	111.9	109.5
C3	N1	C1	122.0	120.0
C3	N1	C2	113.0	120.0
H3C1	C3	H3C2	98.5	109.4
C1	N1	C2	125.0	120.0
N1	C1	S2	122.2	120.0
N1	C1	S1	118.4	120.0
N1	C2	C4	109.2	109.5
N1	C2	H2C1	112.3	109.4
N1	C2	H2C2	112.3	109.5
S2	C1	S1	119.4	120.0
C1	S1	HS	118.4	100.0
C4	C2	H2C1	112.3	109.5
C4	C2	H2C2	112.3	109.5
C2	C4	H4C1	109.2	109.5
C2	C4	H4C2	112.3	109.5
C2	C4	H4C3	112.3	109.5
H2C1	C2	H2C2	98.1	109.5
H4C1	C4	H4C2	112.3	109.5
H4C1	C4	H4C3	112.3	109.4
H4C2	C4	H4C3	98.1	109.5

Torsion Angles for DCD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
H5C1	C5	C3	H5C2	125.3	240.0
H5C1	C5	C3	H5C3	234.8	120.1
H5C2	C5	C3	H5C3	109.5	240.1
N1	C3	C5	H3C1	125.3	239.9
N1	C3	C5	H3C2	234.7	120.0
C5	C3	N1	C1	261.5	270.0
C5	C3	N1	C2	82.3	90.1
H3C1	C3	C5	H3C2	109.5	240.1
C3	C5	H5C1	H5C2	234.7	119.9
C3	C5	H5C1	H5C3	125.3	239.9
H5C1	C5	C3	N1	180.0	180.0
H5C1	C5	C3	H3C1	54.8	300.1
H5C1	C5	C3	H3C2	305.3	60.0
H5C2	C5	H5C1	H5C3	250.5	120.0
C3	C5	H5C2	H5C1	124.4	240.0
C3	C5	H5C2	H5C3	242.2	120.0
H5C2	C5	C3	N1	54.7	300.0
H5C2	C5	C3	H3C1	289.5	60.1
H5C2	C5	C3	H3C2	180.0	180.0
H5C1	C5	H5C2	H5C3	117.8	240.0
C3	C5	H5C3	H5C1	235.6	120.1
C3	C5	H5C3	H5C2	117.8	240.1
H5C3	C5	C3	N1	305.3	59.9
H5C3	C5	C3	H3C1	180.0	180.0
H5C3	C5	C3	H3C2	70.5	299.9
H5C1	C5	H5C3	H5C2	242.2	120.0
N1	C3	C5	H5C1	180.0	180.0
N1	C3	C5	H5C2	54.7	300.0
N1	C3	C5	H5C3	305.3	59.9
C5	C3	N1	H3C1	234.7	120.1
C5	C3	N1	H3C2	125.3	240.1
H3C1	C3	N1	H3C2	250.5	120.0
C1	N1	C3	C2	179.2	179.9
C3	N1	C1	S2	179.2	5.0
C3	N1	C1	S1	1.0	185.1
C3	N1	C2	C4	91.7	94.9
C3	N1	C2	H2C1	326.5	215.0
C3	N1	C2	H2C2	217.0	334.9
H3C1	C3	C5	H5C1	54.8	300.1
H3C1	C3	C5	H5C2	289.5	60.1
H3C1	C3	C5	H5C3	180.0	180.0
C5	C3	H3C1	N1	124.4	239.9
C5	C3	H3C1	H3C2	242.2	119.9
N1	C3	H3C1	H3C2	117.8	240.0
H3C1	C3	N1	C1	26.8	150.0
H3C1	C3	N1	C2	207.6	330.0
H3C2	C3	C5	H5C1	305.3	60.0
H3C2	C3	C5	H5C2	180.0	180.0
H3C2	C3	C5	H5C3	70.5	299.9
C5	C3	H3C2	N1	235.6	120.0
C5	C3	H3C2	H3C1	117.8	240.1
N1	C3	H3C2	H3C1	242.2	120.1
H3C2	C3	N1	C1	136.2	30.0
H3C2	C3	N1	C2	317.0	210.0
C1	N1	C3	H3C1	26.8	150.0
C1	N1	C3	H3C2	136.2	30.0
C3	N1	C1	C2	180.9	180.1
C1	N1	C2	C4	272.6	275.0
C1	N1	C2	H2C1	147.3	35.0
C1	N1	C2	H2C2	37.8	155.0
S2	C1	N1	S1	178.1	179.9
N1	C1	S1	HS	180.0	4.9
C2	N1	C3	H3C1	207.6	330.0
C2	N1	C3	H3C2	317.0	210.0
C3	N1	C2	C1	179.2	179.9
C2	N1	C1	S2	358.3	184.9
C2	N1	C1	S1	180.1	5.0
C4	C2	N1	H2C1	125.3	240.0
C4	C2	N1	H2C2	234.7	120.0
N1	C2	C4	H4C1	180.0	180.0
N1	C2	C4	H4C2	54.7	300.0
N1	C2	C4	H4C3	305.3	60.0
H2C1	C2	N1	H2C2	109.5	240.1
S2	C1	N1	C2	358.3	184.9
N1	C1	S2	S1	181.9	180.1
S2	C1	S1	HS	1.8	185.0
S1	C1	N1	C2	180.1	5.0
N1	C1	S1	S2	178.2	179.9
N1	C2	C4	H2C1	234.7	120.0
N1	C2	C4	H2C2	125.3	240.0
H2C1	C2	C4	H2C2	250.5	120.0
H4C1	C4	C2	H4C2	125.3	240.0
H4C1	C4	C2	H4C3	234.8	120.0
H4C2	C4	C2	H4C3	109.5	240.0
N1	C2	H2C1	C4	123.6	239.9
N1	C2	H2C1	H2C2	241.8	120.0
C4	C2	H2C1	H2C2	118.2	240.0
H2C1	C2	C4	H4C1	305.3	60.0
H2C1	C2	C4	H4C2	180.0	180.0
H2C1	C2	C4	H4C3	70.5	300.0
N1	C2	H2C2	C4	236.4	120.1
N1	C2	H2C2	H2C1	118.2	240.1
C4	C2	H2C2	H2C1	241.8	120.0
H2C2	C2	C4	H4C1	54.8	300.0
H2C2	C2	C4	H4C2	289.5	60.0
H2C2	C2	C4	H4C3	180.0	180.0
H4C1	C4	C2	H2C1	305.3	60.0
H4C1	C4	C2	H2C2	54.8	300.0
C2	C4	H4C1	H4C2	234.7	120.0
C2	C4	H4C1	H4C3	125.2	240.0
H4C2	C4	H4C1	H4C3	250.5	120.0
H4C2	C4	C2	H2C1	180.0	180.0
H4C2	C4	C2	H2C2	289.5	60.0
C2	C4	H4C2	H4C1	123.6	240.0
C2	C4	H4C2	H4C3	241.8	120.0
H4C1	C4	H4C2	H4C3	118.2	240.0
H4C3	C4	C2	H2C1	70.5	300.0
H4C3	C4	C2	H2C2	180.0	180.0
C2	C4	H4C3	H4C1	236.5	120.0
C2	C4	H4C3	H4C2	118.2	240.0
H4C1	C4	H4C3	H4C2	241.8	120.0