PDB Chemical Component DBS
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DBS
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O4 |
C4 |
1.346 |
1.360 |
O4 |
HO4 |
0.950 |
0.967 |
C4 |
C7 |
1.386 |
1.384 |
C4 |
C1 |
1.425 |
1.392 |
C7 |
C10 |
1.395 |
1.386 |
C7 |
HC7 |
1.103 |
1.080 |
C1 |
O1 |
1.322 |
1.358 |
C1 |
C16 |
1.410 |
1.399 |
O1 |
HO1 |
0.950 |
0.967 |
C16 |
C13 |
1.408 |
1.398 |
C16 |
C19 |
1.486 |
1.476 |
C13 |
C10 |
1.390 |
1.377 |
C13 |
HC13 |
1.103 |
1.080 |
C10 |
HC10 |
1.103 |
1.080 |
C19 |
O7 |
1.231 |
1.217 |
C19 |
N1 |
1.357 |
1.347 |
N1 |
C22 |
1.450 |
1.465 |
N1 |
HN1 |
1.020 |
0.970 |
C22 |
C28 |
1.502 |
1.530 |
C22 |
C25 |
1.525 |
1.507 |
C22 |
HC22 |
1.115 |
1.090 |
C28 |
O13 |
1.455 |
1.429 |
C28 |
H281 |
1.115 |
1.090 |
C28 |
H282 |
1.115 |
1.090 |
O13 |
HO13 |
0.950 |
0.967 |
C25 |
O10 |
1.200 |
1.342 |
C25 |
O15 |
1.336 |
1.209 |
O15 |
HO15 |
0.950 |
|
Bond Angles for DBS
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C4 |
O4 |
HO4 |
128.9 |
106.9 |
O4 |
C4 |
C7 |
129.0 |
120.0 |
O4 |
C4 |
C1 |
112.2 |
120.0 |
C7 |
C4 |
C1 |
118.9 |
120.0 |
C4 |
C7 |
C10 |
120.4 |
120.3 |
C4 |
C7 |
HC7 |
119.5 |
119.8 |
C4 |
C1 |
O1 |
114.3 |
120.1 |
C4 |
C1 |
C16 |
120.2 |
119.7 |
C10 |
C7 |
HC7 |
120.1 |
119.8 |
C7 |
C10 |
C13 |
121.8 |
120.3 |
C7 |
C10 |
HC10 |
119.3 |
119.8 |
O1 |
C1 |
C16 |
125.5 |
120.2 |
C1 |
O1 |
HO1 |
114.3 |
106.8 |
C1 |
C16 |
C13 |
119.9 |
119.7 |
C1 |
C16 |
C19 |
120.3 |
120.2 |
C13 |
C16 |
C19 |
119.8 |
120.1 |
C16 |
C13 |
C10 |
118.8 |
120.0 |
C16 |
C13 |
HC13 |
121.3 |
120.0 |
C16 |
C19 |
O7 |
120.4 |
119.9 |
C16 |
C19 |
N1 |
117.6 |
120.0 |
C10 |
C13 |
HC13 |
120.0 |
120.0 |
C13 |
C10 |
HC10 |
118.9 |
119.9 |
O7 |
C19 |
N1 |
122.0 |
120.0 |
C19 |
N1 |
C22 |
123.5 |
120.0 |
C19 |
N1 |
HN1 |
114.7 |
120.0 |
C22 |
N1 |
HN1 |
121.8 |
120.0 |
N1 |
C22 |
C28 |
111.5 |
109.5 |
N1 |
C22 |
C25 |
111.3 |
109.5 |
N1 |
C22 |
HC22 |
108.5 |
109.5 |
C28 |
C22 |
C25 |
114.0 |
109.5 |
C28 |
C22 |
HC22 |
105.5 |
109.5 |
C22 |
C28 |
O13 |
113.2 |
109.5 |
C22 |
C28 |
H281 |
110.9 |
109.5 |
C22 |
C28 |
H282 |
110.8 |
109.4 |
C25 |
C22 |
HC22 |
105.7 |
109.4 |
C22 |
C25 |
O10 |
122.1 |
120.0 |
C22 |
C25 |
O15 |
113.2 |
120.0 |
O13 |
C28 |
H281 |
110.8 |
109.5 |
O13 |
C28 |
H282 |
110.9 |
109.5 |
C28 |
O13 |
HO13 |
113.2 |
106.8 |
H281 |
C28 |
H282 |
99.5 |
109.5 |
O10 |
C25 |
O15 |
124.7 |
120.0 |
C25 |
O15 |
HO15 |
113.2 |
|
Torsion Angles for DBS
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C7 |
C4 |
O4 |
C1 |
180.9 |
179.7 |
O4 |
C4 |
C7 |
C10 |
180.0 |
180.1 |
O4 |
C4 |
C7 |
HC7 |
360.0 |
0.1 |
O4 |
C4 |
C1 |
O1 |
0.2 |
359.7 |
O4 |
C4 |
C1 |
C16 |
180.3 |
180.2 |
HO4 |
O4 |
C4 |
C7 |
180.0 |
89.9 |
HO4 |
O4 |
C4 |
C1 |
359.1 |
270.2 |
C7 |
C4 |
O4 |
HO4 |
180.0 |
89.9 |
O4 |
C4 |
C7 |
C1 |
179.1 |
180.3 |
C7 |
C4 |
C1 |
O1 |
179.4 |
180.0 |
C7 |
C4 |
C1 |
C16 |
359.5 |
0.5 |
C10 |
C7 |
C4 |
HC7 |
180.0 |
180.0 |
C4 |
C7 |
C10 |
C13 |
359.1 |
360.0 |
C4 |
C7 |
C10 |
HC10 |
179.1 |
180.0 |
C1 |
C4 |
O4 |
HO4 |
359.1 |
270.2 |
O4 |
C4 |
C1 |
C7 |
180.8 |
179.7 |
C1 |
C4 |
C7 |
C10 |
0.9 |
359.8 |
C1 |
C4 |
C7 |
HC7 |
180.9 |
179.8 |
O1 |
C1 |
C4 |
C16 |
179.9 |
179.5 |
C4 |
C1 |
O1 |
HO1 |
180.0 |
90.0 |
C4 |
C1 |
C16 |
C13 |
0.1 |
359.5 |
C4 |
C1 |
C16 |
C19 |
180.1 |
179.7 |
C10 |
C7 |
C4 |
C1 |
0.9 |
359.8 |
C4 |
C7 |
C10 |
HC7 |
180.0 |
180.0 |
C16 |
C13 |
C10 |
C7 |
0.6 |
0.0 |
C7 |
C10 |
C13 |
HC13 |
180.6 |
180.0 |
C13 |
C10 |
C7 |
HC10 |
180.0 |
179.9 |
HC7 |
C7 |
C4 |
C1 |
180.9 |
179.8 |
C4 |
C7 |
HC7 |
C10 |
180.0 |
180.0 |
HC7 |
C7 |
C10 |
C13 |
179.0 |
180.0 |
HC7 |
C7 |
C10 |
HC10 |
359.0 |
0.0 |
C4 |
C1 |
O1 |
C16 |
180.1 |
180.5 |
O1 |
C1 |
C16 |
C13 |
180.2 |
180.0 |
O1 |
C1 |
C16 |
C19 |
0.2 |
0.2 |
C4 |
C1 |
C16 |
O1 |
179.9 |
179.5 |
C16 |
C1 |
O1 |
HO1 |
359.9 |
269.6 |
C13 |
C16 |
C1 |
C19 |
180.1 |
179.8 |
C1 |
C16 |
C13 |
C10 |
359.9 |
0.2 |
C1 |
C16 |
C13 |
HC13 |
179.8 |
180.2 |
C1 |
C16 |
C19 |
O7 |
180.0 |
359.8 |
C1 |
C16 |
C19 |
N1 |
0.0 |
179.7 |
HO1 |
O1 |
C1 |
C16 |
359.9 |
269.6 |
C7 |
C10 |
C13 |
C16 |
0.6 |
0.0 |
C1 |
C16 |
C13 |
C19 |
179.9 |
180.2 |
C13 |
C16 |
C19 |
O7 |
359.9 |
180.0 |
C13 |
C16 |
C19 |
N1 |
179.9 |
359.9 |
C10 |
C13 |
C16 |
HC13 |
180.0 |
180.0 |
C16 |
C13 |
C10 |
HC10 |
180.6 |
180.0 |
C1 |
C16 |
C19 |
C13 |
180.1 |
179.8 |
C19 |
C16 |
C13 |
C10 |
179.9 |
180.0 |
C19 |
C16 |
C13 |
HC13 |
359.9 |
0.0 |
O7 |
C19 |
C16 |
N1 |
180.0 |
180.1 |
C16 |
C19 |
N1 |
C22 |
181.0 |
180.0 |
C16 |
C19 |
N1 |
HN1 |
1.0 |
0.1 |
C13 |
C10 |
C7 |
HC7 |
179.0 |
180.0 |
C7 |
C10 |
C13 |
HC10 |
180.0 |
180.1 |
C10 |
C13 |
C16 |
C19 |
179.9 |
180.0 |
C16 |
C13 |
C10 |
HC13 |
180.0 |
180.0 |
HC13 |
C13 |
C16 |
C19 |
359.9 |
0.0 |
C16 |
C13 |
HC13 |
C10 |
180.0 |
180.0 |
HC13 |
C13 |
C10 |
HC10 |
0.6 |
360.0 |
HC10 |
C10 |
C7 |
HC7 |
359.0 |
0.0 |
C7 |
C10 |
HC10 |
C13 |
180.0 |
179.9 |
HC10 |
C10 |
C13 |
HC13 |
0.6 |
360.0 |
C16 |
C19 |
O7 |
N1 |
180.0 |
179.9 |
O7 |
C19 |
N1 |
C22 |
1.0 |
359.9 |
O7 |
C19 |
N1 |
HN1 |
181.0 |
180.0 |
C16 |
C19 |
N1 |
O7 |
180.0 |
180.1 |
C22 |
N1 |
C19 |
HN1 |
180.0 |
179.9 |
C19 |
N1 |
C22 |
C28 |
90.2 |
85.1 |
C19 |
N1 |
C22 |
C25 |
218.7 |
205.1 |
C19 |
N1 |
C22 |
HC22 |
334.5 |
325.0 |
C19 |
N1 |
C22 |
HN1 |
180.0 |
180.1 |
C28 |
C22 |
N1 |
C25 |
231.5 |
240.0 |
C28 |
C22 |
N1 |
HC22 |
115.7 |
120.0 |
N1 |
C22 |
C28 |
O13 |
115.7 |
65.0 |
N1 |
C22 |
C28 |
H281 |
350.4 |
305.0 |
N1 |
C22 |
C28 |
H282 |
241.0 |
185.0 |
C25 |
C22 |
N1 |
HC22 |
244.2 |
240.0 |
N1 |
C22 |
C25 |
O10 |
146.0 |
180.0 |
N1 |
C22 |
C25 |
O15 |
326.1 |
360.0 |
C19 |
N1 |
HN1 |
C22 |
180.0 |
179.9 |
HN1 |
N1 |
C22 |
C28 |
270.2 |
265.0 |
HN1 |
N1 |
C22 |
C25 |
38.7 |
25.0 |
HN1 |
N1 |
C22 |
HC22 |
154.5 |
145.0 |
C28 |
C22 |
N1 |
HN1 |
270.2 |
265.0 |
N1 |
C22 |
C28 |
C25 |
127.0 |
120.0 |
N1 |
C22 |
C28 |
HC22 |
242.5 |
240.0 |
C25 |
C22 |
C28 |
HC22 |
115.5 |
120.0 |
C28 |
C22 |
C25 |
O10 |
273.1 |
300.0 |
C28 |
C22 |
C25 |
O15 |
93.2 |
120.0 |
O13 |
C28 |
C22 |
H281 |
125.3 |
120.0 |
O13 |
C28 |
C22 |
H282 |
234.7 |
240.0 |
C22 |
C28 |
O13 |
HO13 |
180.0 |
180.0 |
H281 |
C28 |
C22 |
H282 |
109.5 |
120.0 |
C25 |
C22 |
N1 |
HN1 |
38.7 |
25.0 |
N1 |
C22 |
C25 |
C28 |
232.9 |
240.0 |
N1 |
C22 |
C25 |
HC22 |
117.5 |
120.0 |
C28 |
C22 |
C25 |
HC22 |
244.7 |
240.0 |
C25 |
C22 |
C28 |
O13 |
348.7 |
305.0 |
C25 |
C22 |
C28 |
H281 |
223.4 |
185.0 |
C25 |
C22 |
C28 |
H282 |
113.9 |
65.0 |
O10 |
C25 |
C22 |
O15 |
179.8 |
180.0 |
C22 |
C25 |
O15 |
HO15 |
180.0 |
|
HC22 |
C22 |
N1 |
HN1 |
154.5 |
145.0 |
N1 |
C22 |
HC22 |
C28 |
119.5 |
120.0 |
N1 |
C22 |
HC22 |
C25 |
240.6 |
240.0 |
C28 |
C22 |
HC22 |
C25 |
121.0 |
120.0 |
HC22 |
C22 |
C28 |
O13 |
233.2 |
185.0 |
HC22 |
C22 |
C28 |
H281 |
107.9 |
65.0 |
HC22 |
C22 |
C28 |
H282 |
358.5 |
305.0 |
HC22 |
C22 |
C25 |
O10 |
28.4 |
60.0 |
HC22 |
C22 |
C25 |
O15 |
208.6 |
240.0 |
O13 |
C28 |
C22 |
C25 |
348.7 |
305.0 |
O13 |
C28 |
C22 |
HC22 |
233.2 |
185.0 |
C22 |
C28 |
O13 |
H281 |
234.7 |
240.0 |
C22 |
C28 |
O13 |
H282 |
125.2 |
120.0 |
H281 |
C28 |
O13 |
H282 |
250.5 |
239.9 |
H281 |
C28 |
C22 |
C25 |
223.4 |
185.0 |
H281 |
C28 |
C22 |
HC22 |
107.9 |
65.0 |
C22 |
C28 |
H281 |
O13 |
126.6 |
120.0 |
C22 |
C28 |
H281 |
H282 |
243.3 |
240.1 |
O13 |
C28 |
H281 |
H282 |
116.7 |
120.1 |
H281 |
C28 |
O13 |
HO13 |
305.3 |
300.0 |
H282 |
C28 |
C22 |
C25 |
113.9 |
65.0 |
H282 |
C28 |
C22 |
HC22 |
358.5 |
305.0 |
C22 |
C28 |
H282 |
O13 |
233.5 |
240.0 |
C22 |
C28 |
H282 |
H281 |
116.7 |
120.0 |
O13 |
C28 |
H282 |
H281 |
243.3 |
239.9 |
H282 |
C28 |
O13 |
HO13 |
54.8 |
60.0 |
HO13 |
O13 |
C28 |
H281 |
305.3 |
300.0 |
HO13 |
O13 |
C28 |
H282 |
54.8 |
60.0 |
O10 |
C25 |
C22 |
HC22 |
28.4 |
60.0 |
C22 |
C25 |
O10 |
O15 |
180.2 |
180.0 |
O10 |
C25 |
O15 |
HO15 |
0.2 |
|
O15 |
C25 |
C22 |
HC22 |
208.6 |
240.0 |
C22 |
C25 |
O15 |
O10 |
179.8 |
180.0 |