PDB Chemical Component DBS

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DBS

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O4 C4 1.346 1.360
O4 HO4 0.950 0.967
C4 C7 1.386 1.384
C4 C1 1.425 1.392
C7 C10 1.395 1.386
C7 HC7 1.103 1.080
C1 O1 1.322 1.358
C1 C16 1.410 1.399
O1 HO1 0.950 0.967
C16 C13 1.408 1.398
C16 C19 1.486 1.476
C13 C10 1.390 1.377
C13 HC13 1.103 1.080
C10 HC10 1.103 1.080
C19 O7 1.231 1.217
C19 N1 1.357 1.347
N1 C22 1.450 1.465
N1 HN1 1.020 0.970
C22 C28 1.502 1.530
C22 C25 1.525 1.507
C22 HC22 1.115 1.090
C28 O13 1.455 1.429
C28 H281 1.115 1.090
C28 H282 1.115 1.090
O13 HO13 0.950 0.967
C25 O10 1.200 1.342
C25 O15 1.336 1.209
O15 HO15 0.950  

Bond Angles for DBS

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C4 O4 HO4 128.9 106.9
O4 C4 C7 129.0 120.0
O4 C4 C1 112.2 120.0
C7 C4 C1 118.9 120.0
C4 C7 C10 120.4 120.3
C4 C7 HC7 119.5 119.8
C4 C1 O1 114.3 120.1
C4 C1 C16 120.2 119.7
C10 C7 HC7 120.1 119.8
C7 C10 C13 121.8 120.3
C7 C10 HC10 119.3 119.8
O1 C1 C16 125.5 120.2
C1 O1 HO1 114.3 106.8
C1 C16 C13 119.9 119.7
C1 C16 C19 120.3 120.2
C13 C16 C19 119.8 120.1
C16 C13 C10 118.8 120.0
C16 C13 HC13 121.3 120.0
C16 C19 O7 120.4 119.9
C16 C19 N1 117.6 120.0
C10 C13 HC13 120.0 120.0
C13 C10 HC10 118.9 119.9
O7 C19 N1 122.0 120.0
C19 N1 C22 123.5 120.0
C19 N1 HN1 114.7 120.0
C22 N1 HN1 121.8 120.0
N1 C22 C28 111.5 109.5
N1 C22 C25 111.3 109.5
N1 C22 HC22 108.5 109.5
C28 C22 C25 114.0 109.5
C28 C22 HC22 105.5 109.5
C22 C28 O13 113.2 109.5
C22 C28 H281 110.9 109.5
C22 C28 H282 110.8 109.4
C25 C22 HC22 105.7 109.4
C22 C25 O10 122.1 120.0
C22 C25 O15 113.2 120.0
O13 C28 H281 110.8 109.5
O13 C28 H282 110.9 109.5
C28 O13 HO13 113.2 106.8
H281 C28 H282 99.5 109.5
O10 C25 O15 124.7 120.0
C25 O15 HO15 113.2  

Torsion Angles for DBS

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C7 C4 O4 C1 180.9 179.7
O4 C4 C7 C10 180.0 180.1
O4 C4 C7 HC7 360.0 0.1
O4 C4 C1 O1 0.2 359.7
O4 C4 C1 C16 180.3 180.2
HO4 O4 C4 C7 180.0 89.9
HO4 O4 C4 C1 359.1 270.2
C7 C4 O4 HO4 180.0 89.9
O4 C4 C7 C1 179.1 180.3
C7 C4 C1 O1 179.4 180.0
C7 C4 C1 C16 359.5 0.5
C10 C7 C4 HC7 180.0 180.0
C4 C7 C10 C13 359.1 360.0
C4 C7 C10 HC10 179.1 180.0
C1 C4 O4 HO4 359.1 270.2
O4 C4 C1 C7 180.8 179.7
C1 C4 C7 C10 0.9 359.8
C1 C4 C7 HC7 180.9 179.8
O1 C1 C4 C16 179.9 179.5
C4 C1 O1 HO1 180.0 90.0
C4 C1 C16 C13 0.1 359.5
C4 C1 C16 C19 180.1 179.7
C10 C7 C4 C1 0.9 359.8
C4 C7 C10 HC7 180.0 180.0
C16 C13 C10 C7 0.6 0.0
C7 C10 C13 HC13 180.6 180.0
C13 C10 C7 HC10 180.0 179.9
HC7 C7 C4 C1 180.9 179.8
C4 C7 HC7 C10 180.0 180.0
HC7 C7 C10 C13 179.0 180.0
HC7 C7 C10 HC10 359.0 0.0
C4 C1 O1 C16 180.1 180.5
O1 C1 C16 C13 180.2 180.0
O1 C1 C16 C19 0.2 0.2
C4 C1 C16 O1 179.9 179.5
C16 C1 O1 HO1 359.9 269.6
C13 C16 C1 C19 180.1 179.8
C1 C16 C13 C10 359.9 0.2
C1 C16 C13 HC13 179.8 180.2
C1 C16 C19 O7 180.0 359.8
C1 C16 C19 N1 0.0 179.7
HO1 O1 C1 C16 359.9 269.6
C7 C10 C13 C16 0.6 0.0
C1 C16 C13 C19 179.9 180.2
C13 C16 C19 O7 359.9 180.0
C13 C16 C19 N1 179.9 359.9
C10 C13 C16 HC13 180.0 180.0
C16 C13 C10 HC10 180.6 180.0
C1 C16 C19 C13 180.1 179.8
C19 C16 C13 C10 179.9 180.0
C19 C16 C13 HC13 359.9 0.0
O7 C19 C16 N1 180.0 180.1
C16 C19 N1 C22 181.0 180.0
C16 C19 N1 HN1 1.0 0.1
C13 C10 C7 HC7 179.0 180.0
C7 C10 C13 HC10 180.0 180.1
C10 C13 C16 C19 179.9 180.0
C16 C13 C10 HC13 180.0 180.0
HC13 C13 C16 C19 359.9 0.0
C16 C13 HC13 C10 180.0 180.0
HC13 C13 C10 HC10 0.6 360.0
HC10 C10 C7 HC7 359.0 0.0
C7 C10 HC10 C13 180.0 179.9
HC10 C10 C13 HC13 0.6 360.0
C16 C19 O7 N1 180.0 179.9
O7 C19 N1 C22 1.0 359.9
O7 C19 N1 HN1 181.0 180.0
C16 C19 N1 O7 180.0 180.1
C22 N1 C19 HN1 180.0 179.9
C19 N1 C22 C28 90.2 85.1
C19 N1 C22 C25 218.7 205.1
C19 N1 C22 HC22 334.5 325.0
C19 N1 C22 HN1 180.0 180.1
C28 C22 N1 C25 231.5 240.0
C28 C22 N1 HC22 115.7 120.0
N1 C22 C28 O13 115.7 65.0
N1 C22 C28 H281 350.4 305.0
N1 C22 C28 H282 241.0 185.0
C25 C22 N1 HC22 244.2 240.0
N1 C22 C25 O10 146.0 180.0
N1 C22 C25 O15 326.1 360.0
C19 N1 HN1 C22 180.0 179.9
HN1 N1 C22 C28 270.2 265.0
HN1 N1 C22 C25 38.7 25.0
HN1 N1 C22 HC22 154.5 145.0
C28 C22 N1 HN1 270.2 265.0
N1 C22 C28 C25 127.0 120.0
N1 C22 C28 HC22 242.5 240.0
C25 C22 C28 HC22 115.5 120.0
C28 C22 C25 O10 273.1 300.0
C28 C22 C25 O15 93.2 120.0
O13 C28 C22 H281 125.3 120.0
O13 C28 C22 H282 234.7 240.0
C22 C28 O13 HO13 180.0 180.0
H281 C28 C22 H282 109.5 120.0
C25 C22 N1 HN1 38.7 25.0
N1 C22 C25 C28 232.9 240.0
N1 C22 C25 HC22 117.5 120.0
C28 C22 C25 HC22 244.7 240.0
C25 C22 C28 O13 348.7 305.0
C25 C22 C28 H281 223.4 185.0
C25 C22 C28 H282 113.9 65.0
O10 C25 C22 O15 179.8 180.0
C22 C25 O15 HO15 180.0  
HC22 C22 N1 HN1 154.5 145.0
N1 C22 HC22 C28 119.5 120.0
N1 C22 HC22 C25 240.6 240.0
C28 C22 HC22 C25 121.0 120.0
HC22 C22 C28 O13 233.2 185.0
HC22 C22 C28 H281 107.9 65.0
HC22 C22 C28 H282 358.5 305.0
HC22 C22 C25 O10 28.4 60.0
HC22 C22 C25 O15 208.6 240.0
O13 C28 C22 C25 348.7 305.0
O13 C28 C22 HC22 233.2 185.0
C22 C28 O13 H281 234.7 240.0
C22 C28 O13 H282 125.2 120.0
H281 C28 O13 H282 250.5 239.9
H281 C28 C22 C25 223.4 185.0
H281 C28 C22 HC22 107.9 65.0
C22 C28 H281 O13 126.6 120.0
C22 C28 H281 H282 243.3 240.1
O13 C28 H281 H282 116.7 120.1
H281 C28 O13 HO13 305.3 300.0
H282 C28 C22 C25 113.9 65.0
H282 C28 C22 HC22 358.5 305.0
C22 C28 H282 O13 233.5 240.0
C22 C28 H282 H281 116.7 120.0
O13 C28 H282 H281 243.3 239.9
H282 C28 O13 HO13 54.8 60.0
HO13 O13 C28 H281 305.3 300.0
HO13 O13 C28 H282 54.8 60.0
O10 C25 C22 HC22 28.4 60.0
C22 C25 O10 O15 180.2 180.0
O10 C25 O15 HO15 0.2  
O15 C25 C22 HC22 208.6 240.0
C22 C25 O15 O10 179.8 180.0