PDB Chemical Component DBF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DBF
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.435 |
1.395 |
C1 |
C6 |
1.417 |
1.381 |
C1 |
H1 |
1.104 |
1.079 |
C2 |
C3 |
1.480 |
1.404 |
C2 |
C13 |
1.523 |
1.474 |
C3 |
C4 |
1.458 |
1.401 |
C3 |
O |
1.409 |
1.348 |
C4 |
C5 |
1.442 |
1.390 |
C4 |
C9 |
1.360 |
1.476 |
C5 |
C6 |
1.410 |
1.381 |
C5 |
H5 |
1.102 |
1.080 |
C6 |
H6 |
1.103 |
1.080 |
O |
C8 |
1.409 |
1.348 |
C7 |
C8 |
1.480 |
1.404 |
C7 |
C12 |
1.435 |
1.395 |
C7 |
C14 |
1.524 |
1.474 |
C8 |
C9 |
1.458 |
1.401 |
C9 |
C10 |
1.440 |
1.390 |
C10 |
C11 |
1.411 |
1.381 |
C10 |
H10 |
1.102 |
1.080 |
C11 |
C12 |
1.416 |
1.381 |
C11 |
H11 |
1.103 |
1.080 |
C12 |
H12 |
1.103 |
1.079 |
O1 |
C13 |
1.251 |
1.215 |
C13 |
O2 |
1.263 |
1.347 |
O2 |
HO2 |
0.951 |
0.967 |
O3 |
C14 |
1.263 |
1.347 |
O3 |
HO3 |
0.950 |
0.967 |
C14 |
O4 |
1.249 |
1.215 |
Bond Angles for DBF
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C6 |
122.3 |
120.4 |
C2 |
C1 |
H1 |
119.4 |
119.7 |
C1 |
C2 |
C3 |
117.6 |
119.8 |
C1 |
C2 |
C13 |
118.8 |
120.1 |
C6 |
C1 |
H1 |
118.2 |
119.8 |
C1 |
C6 |
C5 |
121.2 |
120.4 |
C1 |
C6 |
H6 |
119.6 |
119.8 |
C3 |
C2 |
C13 |
123.7 |
120.1 |
C2 |
C3 |
C4 |
118.7 |
119.0 |
C2 |
C3 |
O |
132.2 |
132.4 |
C2 |
C13 |
O1 |
120.1 |
120.0 |
C2 |
C13 |
O2 |
120.5 |
120.0 |
C4 |
C3 |
O |
109.1 |
108.6 |
C3 |
C4 |
C5 |
121.2 |
120.4 |
C3 |
C4 |
C9 |
107.8 |
105.6 |
C3 |
O |
C8 |
106.2 |
111.7 |
C5 |
C4 |
C9 |
131.0 |
134.0 |
C4 |
C5 |
C6 |
119.0 |
120.1 |
C4 |
C5 |
H5 |
121.6 |
120.0 |
C4 |
C9 |
C8 |
107.9 |
105.6 |
C4 |
C9 |
C10 |
130.9 |
134.0 |
C6 |
C5 |
H5 |
119.4 |
120.0 |
C5 |
C6 |
H6 |
119.2 |
119.9 |
O |
C8 |
C7 |
132.4 |
132.4 |
O |
C8 |
C9 |
109.0 |
108.6 |
C8 |
C7 |
C12 |
117.7 |
119.8 |
C8 |
C7 |
C14 |
123.7 |
120.1 |
C7 |
C8 |
C9 |
118.6 |
119.0 |
C12 |
C7 |
C14 |
118.7 |
120.1 |
C7 |
C12 |
C11 |
122.3 |
120.4 |
C7 |
C12 |
H12 |
119.5 |
119.7 |
C7 |
C14 |
O3 |
120.6 |
120.0 |
C7 |
C14 |
O4 |
120.0 |
120.0 |
C8 |
C9 |
C10 |
121.2 |
120.4 |
C9 |
C10 |
C11 |
119.1 |
120.1 |
C9 |
C10 |
H10 |
121.4 |
120.0 |
C11 |
C10 |
H10 |
119.5 |
120.0 |
C10 |
C11 |
C12 |
121.2 |
120.4 |
C10 |
C11 |
H11 |
119.2 |
119.9 |
C12 |
C11 |
H11 |
119.6 |
119.8 |
C11 |
C12 |
H12 |
118.2 |
119.8 |
O1 |
C13 |
O2 |
119.4 |
120.0 |
C13 |
O2 |
HO2 |
120.6 |
120.0 |
C14 |
O3 |
HO3 |
120.5 |
120.0 |
O3 |
C14 |
O4 |
119.5 |
120.0 |
Torsion Angles for DBF
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C1 |
C2 |
H1 |
180.0 |
180.1 |
C2 |
C1 |
C6 |
C5 |
359.9 |
360.0 |
C2 |
C1 |
C6 |
H6 |
179.9 |
180.0 |
C3 |
C2 |
C1 |
C13 |
180.0 |
180.2 |
C1 |
C2 |
C3 |
C4 |
360.0 |
359.5 |
C1 |
C2 |
C3 |
O |
180.0 |
180.2 |
C1 |
C2 |
C13 |
O1 |
180.0 |
180.0 |
C1 |
C2 |
C13 |
O2 |
360.0 |
360.0 |
C2 |
C1 |
C6 |
H1 |
180.0 |
179.9 |
C6 |
C1 |
C2 |
C3 |
0.0 |
0.3 |
C6 |
C1 |
C2 |
C13 |
180.1 |
180.1 |
C4 |
C5 |
C6 |
C1 |
0.1 |
0.0 |
C1 |
C6 |
C5 |
H5 |
180.1 |
180.1 |
C5 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
C2 |
C1 |
H1 |
C6 |
180.0 |
180.1 |
H1 |
C1 |
C2 |
C3 |
180.1 |
180.2 |
H1 |
C1 |
C2 |
C13 |
0.1 |
0.0 |
H1 |
C1 |
C6 |
C5 |
179.9 |
180.0 |
H1 |
C1 |
C6 |
H6 |
359.9 |
0.1 |
C3 |
C2 |
C1 |
C6 |
0.0 |
0.3 |
C3 |
C2 |
C1 |
H1 |
180.1 |
180.2 |
C1 |
C2 |
C3 |
C13 |
180.1 |
179.8 |
C3 |
C2 |
C13 |
O1 |
0.0 |
359.8 |
C3 |
C2 |
C13 |
O2 |
180.0 |
179.8 |
C4 |
C3 |
C2 |
O |
180.0 |
179.3 |
C2 |
C3 |
C4 |
C5 |
0.0 |
0.5 |
C2 |
C3 |
C4 |
C9 |
180.0 |
180.3 |
C2 |
C3 |
O |
C8 |
180.1 |
179.4 |
C13 |
C2 |
C1 |
C6 |
180.1 |
180.1 |
C13 |
C2 |
C1 |
H1 |
0.1 |
0.0 |
C1 |
C2 |
C13 |
C3 |
179.9 |
180.2 |
C13 |
C2 |
C3 |
C4 |
179.9 |
179.7 |
C13 |
C2 |
C3 |
O |
359.9 |
0.4 |
O1 |
C13 |
C2 |
O2 |
180.0 |
180.0 |
C2 |
C13 |
O2 |
HO2 |
180.0 |
180.0 |
C4 |
C3 |
C2 |
C13 |
179.9 |
179.7 |
C2 |
C3 |
C4 |
O |
180.0 |
180.6 |
C4 |
C3 |
O |
C8 |
0.0 |
0.1 |
C5 |
C4 |
C3 |
C9 |
180.0 |
180.2 |
C3 |
C4 |
C5 |
C6 |
359.9 |
359.7 |
C3 |
C4 |
C5 |
H5 |
180.0 |
179.7 |
C3 |
C4 |
C9 |
C8 |
360.0 |
0.4 |
C3 |
C4 |
C9 |
C10 |
180.0 |
179.6 |
O |
C3 |
C2 |
C13 |
359.9 |
0.4 |
C2 |
C3 |
O |
C4 |
180.0 |
179.3 |
O |
C3 |
C4 |
C5 |
180.0 |
180.0 |
O |
C3 |
C4 |
C9 |
360.0 |
359.7 |
C3 |
O |
C8 |
C7 |
180.0 |
179.9 |
C3 |
O |
C8 |
C9 |
359.9 |
0.2 |
C1 |
C6 |
C5 |
C4 |
0.1 |
0.0 |
C5 |
C4 |
C3 |
O |
180.0 |
180.0 |
C3 |
C4 |
C5 |
C9 |
179.9 |
179.7 |
C5 |
C4 |
C9 |
C8 |
179.9 |
180.1 |
C5 |
C4 |
C9 |
C10 |
359.9 |
359.3 |
C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
C4 |
C5 |
C6 |
H6 |
180.1 |
180.0 |
C9 |
C4 |
C3 |
O |
360.0 |
359.7 |
C3 |
C4 |
C9 |
C5 |
180.1 |
180.3 |
C9 |
C4 |
C5 |
C6 |
180.0 |
180.0 |
C9 |
C4 |
C5 |
H5 |
0.0 |
360.0 |
O |
C8 |
C9 |
C4 |
0.0 |
359.6 |
C7 |
C8 |
C9 |
C4 |
180.0 |
179.9 |
C8 |
C9 |
C4 |
C10 |
180.0 |
180.8 |
C4 |
C9 |
C10 |
C11 |
179.8 |
180.4 |
C4 |
C9 |
C10 |
H10 |
359.8 |
0.6 |
C5 |
C6 |
C1 |
H1 |
179.9 |
180.0 |
C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
C6 |
C5 |
C4 |
C9 |
180.0 |
180.0 |
C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
H5 |
C5 |
C4 |
C9 |
0.0 |
360.0 |
C4 |
C5 |
H5 |
C6 |
180.0 |
180.0 |
H5 |
C5 |
C6 |
H6 |
0.0 |
0.0 |
H6 |
C6 |
C1 |
H1 |
359.9 |
0.1 |
C1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
H6 |
C6 |
C5 |
H5 |
0.0 |
0.0 |
C4 |
C9 |
C8 |
O |
0.0 |
359.6 |
O |
C8 |
C7 |
C12 |
180.1 |
180.0 |
O |
C8 |
C7 |
C14 |
0.1 |
0.0 |
C7 |
C8 |
O |
C9 |
180.0 |
179.7 |
O |
C8 |
C9 |
C10 |
180.0 |
180.3 |
C4 |
C9 |
C8 |
C7 |
180.0 |
179.9 |
O |
C8 |
C7 |
C9 |
180.0 |
180.3 |
C12 |
C7 |
C8 |
C14 |
180.0 |
180.0 |
C8 |
C7 |
C12 |
C11 |
359.9 |
0.0 |
C8 |
C7 |
C12 |
H12 |
179.9 |
180.0 |
C8 |
C7 |
C14 |
O3 |
180.1 |
180.0 |
C8 |
C7 |
C14 |
O4 |
0.2 |
360.0 |
C7 |
C8 |
C9 |
C10 |
0.0 |
0.5 |
C8 |
C7 |
C12 |
C14 |
180.0 |
180.0 |
C12 |
C7 |
C8 |
C9 |
0.1 |
359.7 |
C12 |
C7 |
C14 |
O3 |
0.1 |
0.1 |
C12 |
C7 |
C14 |
O4 |
180.2 |
180.0 |
C10 |
C11 |
C12 |
C7 |
360.0 |
0.1 |
C7 |
C12 |
C11 |
H11 |
180.0 |
180.1 |
C11 |
C12 |
C7 |
H12 |
180.0 |
180.0 |
C8 |
C7 |
C14 |
C12 |
180.0 |
180.0 |
C14 |
C7 |
C8 |
C9 |
180.1 |
179.7 |
C14 |
C7 |
C12 |
C11 |
179.9 |
180.0 |
C14 |
C7 |
C12 |
H12 |
359.9 |
0.0 |
C7 |
C14 |
O3 |
HO3 |
180.0 |
180.1 |
O3 |
C14 |
C7 |
O4 |
179.9 |
180.1 |
C4 |
C9 |
C8 |
C10 |
180.0 |
179.3 |
O |
C8 |
C9 |
C7 |
180.0 |
179.8 |
C9 |
C8 |
C7 |
C12 |
0.1 |
359.7 |
C9 |
C8 |
C7 |
C14 |
180.1 |
179.7 |
C8 |
C9 |
C10 |
C11 |
359.9 |
359.5 |
C8 |
C9 |
C10 |
H10 |
179.8 |
179.7 |
C4 |
C9 |
C10 |
C8 |
180.0 |
180.9 |
C11 |
C10 |
C9 |
H10 |
180.0 |
179.8 |
C9 |
C10 |
C11 |
C12 |
0.1 |
0.2 |
C9 |
C10 |
C11 |
H11 |
180.2 |
180.2 |
C7 |
C12 |
C11 |
C10 |
360.0 |
0.1 |
C9 |
C10 |
C11 |
H10 |
180.0 |
180.2 |
C12 |
C11 |
C10 |
H11 |
180.0 |
180.0 |
C10 |
C11 |
C12 |
H12 |
180.0 |
180.0 |
C9 |
C10 |
H10 |
C11 |
180.0 |
179.8 |
H10 |
C10 |
C11 |
C12 |
180.2 |
180.0 |
H10 |
C10 |
C11 |
H11 |
0.2 |
360.0 |
C11 |
C12 |
C7 |
C14 |
179.9 |
180.0 |
C7 |
C12 |
C11 |
H12 |
180.0 |
180.0 |
C12 |
C11 |
C10 |
H10 |
180.2 |
180.0 |
C10 |
C11 |
C12 |
H11 |
180.0 |
180.0 |
H11 |
C11 |
C10 |
H10 |
0.2 |
360.0 |
C10 |
C11 |
H11 |
C12 |
180.0 |
180.0 |
H11 |
C11 |
C12 |
H12 |
360.0 |
0.0 |
H12 |
C12 |
C7 |
C14 |
359.9 |
0.0 |
C7 |
C12 |
H12 |
C11 |
180.0 |
180.0 |
H12 |
C12 |
C11 |
H11 |
360.0 |
0.0 |
C2 |
C13 |
O1 |
O2 |
180.0 |
180.0 |
O1 |
C13 |
O2 |
HO2 |
0.0 |
360.0 |
C2 |
C13 |
O2 |
O1 |
180.0 |
180.0 |
C7 |
C14 |
O3 |
O4 |
180.1 |
179.9 |
HO3 |
O3 |
C14 |
O4 |
359.9 |
0.2 |
C7 |
C14 |
O4 |
O3 |
179.9 |
180.1 |
O4 |
C14 |
O3 |
HO3 |
359.9 |
0.2 |