PDB Chemical Component DBC

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DBC

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O4	C5	1.473	1.430
O4	HO4	0.951	0.966
C5	O3	1.478	1.433
C5	O2	1.449	1.438
C5	H5	1.100	1.090
O3	C3	1.425	1.443
O2	C2	1.420	1.448
C2	C1	1.528	1.530
C2	C3	1.527	1.548
C2	H2	1.100	1.091
C1	S1	1.812	1.813
C1	H11	1.100	1.091
C1	H12	1.100	1.090
S1	HS1	1.300	1.345
C3	C4	1.527	1.531
C3	H3	1.100	1.089
C4	S4	1.829	1.814
C4	H41	1.100	1.090
C4	H42	1.100	1.090
S4	HS4	1.301	1.345

Bond Angles for DBC

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C5	O4	HO4	109.5	114.0
O4	C5	O3	115.8	109.6
O4	C5	O2	111.0	109.6
O4	C5	H5	103.4	109.6
O3	C5	O2	108.1	108.8
O3	C5	H5	106.7	109.6
C5	O3	C3	107.3	107.2
O2	C5	H5	111.8	109.5
C5	O2	C2	106.8	104.8
O3	C3	C2	105.4	103.1
O3	C3	C4	106.7	110.7
O3	C3	H3	116.2	110.7
O2	C2	C1	108.0	111.0
O2	C2	C3	105.9	101.7
O2	C2	H2	114.9	111.0
C1	C2	C3	115.1	111.0
C1	C2	H2	105.6	110.8
C2	C1	S1	112.9	109.5
C2	C1	H11	108.3	109.5
C2	C1	H12	107.6	109.5
C3	C2	H2	107.7	111.0
C2	C3	C4	115.7	110.7
C2	C3	H3	107.3	110.7
S1	C1	H11	108.4	109.5
S1	C1	H12	107.6	109.5
C1	S1	HS1	109.5	103.0
H11	C1	H12	112.2	109.5
C4	C3	H3	106.0	110.8
C3	C4	S4	112.4	109.5
C3	C4	H41	108.5	109.4
C3	C4	H42	107.8	109.5
S4	C4	H41	108.5	109.5
S4	C4	H42	107.8	109.5
C4	S4	HS4	109.5	103.0
H41	C4	H42	111.8	109.5

Torsion Angles for DBC

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O3	C5	O4	O2	236.3	240.6
O3	C5	O4	H5	116.3	120.4
O4	C5	O3	C3	125.0	120.6
O2	C5	O4	H5	240.0	239.8
O4	C5	O2	C2	216.1	215.8
HO4	O4	C5	O3	241.0	180.0
HO4	O4	C5	O2	4.7	299.4
HO4	O4	C5	H5	124.8	59.6
O3	C5	O4	HO4	241.0	180.0
O4	C5	O3	O2	125.2	119.8
O4	C5	O3	H5	245.6	239.6
O2	C5	O3	H5	120.3	119.8
O3	C5	O2	C2	344.1	335.7
C5	O3	C3	C2	14.9	21.4
C5	O3	C3	C4	138.5	139.8
C5	O3	C3	H3	256.3	263.0
O2	C5	O4	HO4	4.7	299.4
O4	C5	O2	O3	232.0	240.1
O4	C5	O2	H5	114.9	120.3
O3	C5	O2	H5	242.9	240.1
O2	C5	O3	C3	359.8	0.7
C5	O2	C2	C1	148.5	154.3
C5	O2	C2	C3	24.7	36.1
C5	O2	C2	H2	266.0	278.0
H5	C5	O4	HO4	124.8	59.6
O4	C5	H5	O3	122.5	120.4
O4	C5	H5	O2	240.5	239.8
O3	C5	H5	O2	117.9	119.4
H5	C5	O3	C3	239.4	240.9
H5	C5	O2	C2	101.2	95.5
C3	O3	C5	O2	359.8	0.7
C3	O3	C5	H5	239.4	240.9
O2	C2	C3	O3	335.1	324.4
C1	C2	C3	O3	215.9	206.3
O3	C3	C2	H2	98.5	82.6
C2	C3	O3	C4	236.5	241.6
C2	C3	O3	H3	118.6	118.4
C4	C3	O3	H3	242.1	236.8
O3	C3	C4	S4	174.8	66.4
O3	C3	C4	H41	294.9	186.4
O3	C3	C4	H42	56.1	306.4
C2	O2	C5	H5	101.2	95.5
O3	C3	C2	O2	335.1	324.4
C1	C2	O2	C3	123.7	118.1
C1	C2	O2	H2	242.5	236.3
O2	C2	C1	S1	67.2	66.5
O2	C2	C1	H11	187.2	186.4
O2	C2	C1	H12	308.7	306.4
C3	C2	O2	H2	118.7	118.2
O2	C2	C3	C4	217.5	206.1
O2	C2	C3	H3	99.5	82.8
O3	C3	C2	C1	215.9	206.3
O2	C2	C1	C3	242.0	247.6
O2	C2	C1	H2	123.4	123.8
C3	C2	C1	H2	241.3	236.2
C1	C2	C3	C4	98.3	87.9
C1	C2	C3	H3	340.3	324.7
S1	C1	C2	H11	240.0	240.0
S1	C1	C2	H12	118.5	120.0
C2	C1	S1	HS1	335.6	180.0
H11	C1	C2	H12	238.5	240.0
O3	C3	C2	C4	117.6	118.4
O3	C3	C2	H3	235.6	241.6
O2	C2	C3	C1	119.1	118.1
O2	C2	C3	H2	236.6	241.9
C1	C2	C3	H2	117.5	123.7
C3	C2	C1	S1	185.1	178.8
C3	C2	C1	H11	305.2	298.8
C3	C2	C1	H12	66.6	58.8
C4	C3	C2	H3	118.0	123.3
C2	C3	C4	S4	291.7	180.1
C2	C3	C4	H41	51.8	300.1
C2	C3	C4	H42	173.0	60.1
O2	C2	H2	C1	241.1	236.2
O2	C2	H2	C3	117.7	112.4
C1	C2	H2	C3	236.5	236.2
H2	C2	C1	S1	303.8	302.7
H2	C2	C1	H11	63.8	62.6
H2	C2	C1	H12	185.3	182.6
H2	C2	C3	C4	340.9	324.2
H2	C2	C3	H3	222.9	200.9
S1	C1	C2	C3	185.1	178.8
S1	C1	C2	H2	303.8	302.7
C2	C1	S1	H11	120.0	120.0
C2	C1	S1	H12	241.5	240.0
H11	C1	S1	H12	121.5	120.0
H11	C1	C2	C3	305.2	298.8
H11	C1	C2	H2	63.8	62.6
C2	C1	H11	S1	237.2	240.0
C2	C1	H11	H12	118.6	120.0
S1	C1	H11	H12	241.4	240.0
H11	C1	S1	HS1	215.6	60.0
H12	C1	C2	C3	66.6	58.8
H12	C1	C2	H2	185.3	182.6
C2	C1	H12	S1	121.9	120.0
C2	C1	H12	H11	240.9	240.0
S1	C1	H12	H11	119.1	120.0
H12	C1	S1	HS1	94.1	300.0
HS1	S1	C1	H11	215.6	60.0
HS1	S1	C1	H12	94.1	300.0
O3	C3	C4	C2	243.1	246.3
O3	C3	C4	H3	124.4	123.1
C4	C3	C2	H2	340.9	324.2
C2	C3	C4	H3	241.3	236.8
S4	C4	C3	H41	240.0	240.0
S4	C4	C3	H42	118.7	120.0
C3	C4	S4	HS4	70.7	180.0
H41	C4	C3	H42	238.7	240.0
O3	C3	H3	C2	117.6	113.7
O3	C3	H3	C4	241.7	236.9
H3	C3	C2	H2	222.9	200.9
C2	C3	H3	C4	124.1	123.2
H3	C3	C4	S4	50.4	303.3
H3	C3	C4	H41	170.5	63.3
H3	C3	C4	H42	291.7	183.3
S4	C4	C3	H3	50.4	303.3
C3	C4	S4	H41	120.0	119.9
C3	C4	S4	H42	241.3	240.0
H41	C4	S4	H42	121.3	120.1
H41	C4	C3	H3	170.5	63.3
C3	C4	H41	S4	237.6	240.0
C3	C4	H41	H42	118.8	120.0
S4	C4	H41	H42	241.2	240.0
H41	C4	S4	HS4	310.7	60.0
H42	C4	C3	H3	291.7	183.3
C3	C4	H42	S4	121.6	120.0
C3	C4	H42	H41	240.8	240.1
S4	C4	H42	H41	119.2	120.1
H42	C4	S4	HS4	189.5	300.0
HS4	S4	C4	H41	310.7	60.0
HS4	S4	C4	H42	189.5	300.0