PDB Chemical Component DBB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DBB
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.486 |
1.468 |
| CA |
C |
1.564 |
1.507 |
| CA |
CB |
1.565 |
1.530 |
| C |
O |
1.236 |
1.208 |
| CB |
CG |
1.551 |
1.531 |
| C |
OXT |
1.351 |
1.342 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CA |
HA |
1.100 |
1.090 |
| CB |
HB2 |
1.100 |
1.090 |
| CB |
HB3 |
1.100 |
1.091 |
| CG |
HG1 |
1.099 |
1.090 |
| CG |
HG2 |
1.100 |
1.091 |
| CG |
HG3 |
1.100 |
1.090 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for DBB
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
CA |
C |
117.4 |
109.5 |
| N |
CA |
CB |
101.9 |
109.5 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.0 |
| N |
CA |
HA |
108.7 |
109.5 |
| C |
CA |
CB |
112.7 |
109.5 |
| CA |
C |
O |
118.6 |
120.0 |
| CA |
C |
OXT |
119.9 |
120.0 |
| C |
CA |
HA |
107.8 |
109.4 |
| CA |
CB |
CG |
112.2 |
109.5 |
| CB |
CA |
HA |
107.8 |
109.4 |
| CA |
CB |
HB2 |
108.8 |
109.5 |
| CA |
CB |
HB3 |
108.8 |
109.5 |
| O |
C |
OXT |
121.4 |
120.0 |
| CG |
CB |
HB2 |
108.8 |
109.5 |
| CG |
CB |
HB3 |
108.8 |
109.4 |
| CB |
CG |
HG1 |
109.5 |
109.5 |
| CB |
CG |
HG2 |
109.5 |
109.4 |
| CB |
CG |
HG3 |
109.5 |
109.5 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| H |
N |
H2 |
109.4 |
110.9 |
| HB2 |
CB |
HB3 |
109.5 |
109.5 |
| HG1 |
CG |
HG2 |
109.5 |
109.5 |
| HG1 |
CG |
HG3 |
109.5 |
109.6 |
| HG2 |
CG |
HG3 |
109.4 |
109.5 |
Torsion Angles for DBB
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C |
CA |
N |
CB |
236.4 |
240.0 |
| N |
CA |
C |
O |
156.8 |
20.0 |
| N |
CA |
C |
OXT |
334.5 |
200.0 |
| C |
CA |
N |
HA |
122.7 |
120.0 |
| N |
CA |
CB |
CG |
72.7 |
64.9 |
| CB |
CA |
N |
HA |
246.3 |
240.0 |
| N |
CA |
CB |
HB2 |
193.1 |
185.0 |
| N |
CA |
CB |
HB3 |
312.3 |
305.0 |
| H |
N |
CA |
H2 |
240.1 |
236.1 |
| N |
CA |
C |
CB |
118.0 |
120.0 |
| C |
CA |
N |
H |
180.0 |
300.0 |
| C |
CA |
N |
H2 |
300.0 |
63.9 |
| N |
CA |
C |
HA |
236.8 |
240.0 |
| C |
CA |
CB |
CG |
199.5 |
185.0 |
| CB |
CA |
C |
HA |
118.8 |
120.0 |
| C |
CA |
CB |
HB2 |
319.9 |
305.0 |
| C |
CA |
CB |
HB3 |
79.1 |
65.0 |
| O |
C |
CA |
OXT |
182.3 |
179.9 |
| CA |
C |
OXT |
HXT |
182.4 |
180.0 |
| N |
CA |
CB |
C |
233.2 |
239.9 |
| CB |
CA |
N |
H |
303.7 |
60.1 |
| CB |
CA |
N |
H2 |
63.6 |
184.0 |
| N |
CA |
CB |
HA |
114.4 |
120.0 |
| CB |
CA |
C |
O |
38.8 |
259.9 |
| CB |
CA |
C |
OXT |
216.5 |
80.0 |
| C |
CA |
CB |
HA |
241.2 |
240.0 |
| CG |
CB |
CA |
HB2 |
239.6 |
239.9 |
| CG |
CB |
CA |
HB3 |
120.4 |
119.9 |
| CA |
CB |
CG |
HG1 |
180.0 |
300.1 |
| CA |
CB |
CG |
HG2 |
300.0 |
60.0 |
| CA |
CB |
CG |
HG3 |
60.0 |
180.0 |
| HB2 |
CB |
CA |
HB3 |
240.8 |
240.0 |
| O |
C |
CA |
CB |
38.8 |
259.9 |
| CA |
C |
O |
OXT |
177.6 |
180.1 |
| O |
C |
CA |
HA |
280.0 |
140.0 |
| O |
C |
OXT |
HXT |
0.0 |
0.0 |
| CG |
CB |
CA |
HA |
318.3 |
304.9 |
| CA |
CB |
CG |
HB2 |
120.4 |
120.0 |
| CA |
CB |
CG |
HB3 |
239.6 |
240.0 |
| HB2 |
CB |
CG |
HB3 |
119.2 |
120.0 |
| HG1 |
CG |
CB |
HG2 |
240.0 |
240.0 |
| HG1 |
CG |
CB |
HG3 |
120.0 |
120.1 |
| HG2 |
CG |
CB |
HG3 |
240.0 |
240.1 |
| OXT |
C |
CA |
CB |
216.5 |
80.0 |
| CA |
C |
OXT |
O |
182.4 |
179.9 |
| OXT |
C |
CA |
HA |
97.7 |
320.0 |
| H |
N |
CA |
C |
180.0 |
300.0 |
| H |
N |
CA |
CB |
303.7 |
60.1 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CA |
HA |
57.3 |
180.0 |
| H2 |
N |
CA |
C |
300.0 |
63.9 |
| H2 |
N |
CA |
CB |
63.6 |
184.0 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| H2 |
N |
CA |
HA |
177.3 |
303.9 |
| N |
CA |
HA |
C |
128.3 |
120.0 |
| N |
CA |
HA |
CB |
250.2 |
240.0 |
| HA |
CA |
N |
H |
57.3 |
180.0 |
| HA |
CA |
N |
H2 |
177.3 |
303.9 |
| C |
CA |
HA |
CB |
121.9 |
120.0 |
| HA |
CA |
C |
O |
280.0 |
140.0 |
| HA |
CA |
C |
OXT |
97.7 |
320.0 |
| HA |
CA |
CB |
CG |
318.3 |
304.9 |
| HA |
CA |
CB |
HB2 |
78.7 |
65.0 |
| HA |
CA |
CB |
HB3 |
197.9 |
185.0 |
| CA |
CB |
HB2 |
CG |
237.5 |
240.0 |
| HB2 |
CB |
CA |
HA |
78.7 |
65.0 |
| CA |
CB |
HB2 |
HB3 |
118.7 |
120.0 |
| CG |
CB |
HB2 |
HB3 |
241.2 |
240.0 |
| HB2 |
CB |
CG |
HG1 |
59.6 |
180.0 |
| HB2 |
CB |
CG |
HG2 |
179.6 |
300.0 |
| HB2 |
CB |
CG |
HG3 |
299.6 |
59.9 |
| CA |
CB |
HB3 |
CG |
122.5 |
120.0 |
| HB3 |
CB |
CA |
HA |
197.9 |
185.0 |
| CA |
CB |
HB3 |
HB2 |
241.2 |
240.0 |
| CG |
CB |
HB3 |
HB2 |
118.7 |
120.0 |
| HB3 |
CB |
CG |
HG1 |
300.4 |
60.0 |
| HB3 |
CB |
CG |
HG2 |
60.4 |
180.0 |
| HB3 |
CB |
CG |
HG3 |
180.4 |
299.9 |
| HG1 |
CG |
CB |
HB2 |
59.6 |
180.0 |
| HG1 |
CG |
CB |
HB3 |
300.4 |
60.0 |
| CB |
CG |
HG1 |
HG2 |
120.0 |
119.9 |
| CB |
CG |
HG1 |
HG3 |
240.0 |
240.0 |
| HG2 |
CG |
HG1 |
HG3 |
120.0 |
120.1 |
| HG2 |
CG |
CB |
HB2 |
179.6 |
300.0 |
| HG2 |
CG |
CB |
HB3 |
60.4 |
180.0 |
| CB |
CG |
HG2 |
HG1 |
240.0 |
240.0 |
| CB |
CG |
HG2 |
HG3 |
120.0 |
119.9 |
| HG1 |
CG |
HG2 |
HG3 |
240.0 |
239.9 |
| HG3 |
CG |
CB |
HB2 |
299.6 |
59.9 |
| HG3 |
CG |
CB |
HB3 |
180.4 |
299.9 |
| CB |
CG |
HG3 |
HG1 |
120.0 |
120.0 |
| CB |
CG |
HG3 |
HG2 |
240.0 |
240.1 |
| HG1 |
CG |
HG3 |
HG2 |
120.0 |
120.1 |