PDB Chemical Component DB8

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DB8

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CAA OAV 1.380 1.429
CAA HAA 1.100 1.089
CAA HAAA 1.100 1.090
CAA HAAB 1.100 1.090
CAX O02 1.386 1.359
C01 O02 1.455 1.429
NBH CAC 1.468 1.469
CAM CAC 1.531 1.530
CAC HAC 1.100 1.091
CAC HACA 1.100 1.089
CAG NAD 1.054 1.136
CL1 CAY 1.730 1.736
CL2 CAZ 1.711 1.737
CBA CAG 1.564 1.433
CBA CAH 1.391 1.404
NAT CAH 1.393 1.308
CAH HAH 1.080 1.080
CAI CAZ 1.409 1.381
CAI CAY 1.402 1.383
CAI HAI 1.080 1.080
CBB CAJ 1.375 1.388
CAX CAJ 1.481 1.386
CAJ HAJ 1.080 1.080
CBD CAK 1.420 1.376
CAK CBF 1.463 1.403
CAK HAK 1.080 1.081
CBC CAL 1.398 1.365
CAL CBG 1.457 1.403
CAL HAL 1.080 1.080
CAM CAN 1.528 1.530
CAM HAM 1.100 1.090
CAM HAMA 1.100 1.090
OAW CAN 1.380 1.429
CAN HAN 1.100 1.090
CAN HANA 1.100 1.090
CAO NBI 1.465 1.470
CAO HAO 1.100 1.090
CAO HAOA 1.100 1.090
CAO HAOB 1.100 1.090
NBH CAP 1.465 1.470
CAR CAP 1.517 1.531
CAP HAP 1.100 1.090
CAP HAPA 1.100 1.089
CAS CAQ 1.512 1.530
CAQ NBH 1.428 1.470
CAQ HAQ 1.101 1.091
CAQ HAQA 1.100 1.090
NBI CAR 1.441 1.470
CAR HAR 1.100 1.091
CAR HARA 1.100 1.090
CAS NBI 1.434 1.469
CAS HAS 1.100 1.091
CAS HASA 1.100 1.090
CBF NAT 1.374 1.341
CBB NAU 1.473 1.398
NAU CBE 1.512 1.381
NAU HNAU 1.000 0.970
OAV CBC 1.420 1.360
OAW CBD 1.492 1.358
CAY CAX 1.388 1.388
CAZ CBB 1.440 1.391
CBE CBA 1.408 1.404
CBC CBD 1.429 1.402
CBG CBE 1.491 1.413
CBG CBF 1.407 1.416
C01 H01 1.100 1.091
C01 H01A 1.100 1.089
C01 H01B 1.100 1.090

Bond Angles for DB8

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OAV CAA HAA 109.5 109.5
OAV CAA HAAA 109.5 109.4
OAV CAA HAAB 109.5 109.5
CAA OAV CBC 119.2 117.0
HAA CAA HAAA 109.4 109.4
HAA CAA HAAB 109.4 109.5
HAAA CAA HAAB 109.5 109.5
NBH CAC HAC 110.3 109.5
NBH CAC HACA 110.3 109.5
CAM CAC HAC 110.2 109.5
CAM CAC HACA 110.2 109.5
HAC CAC HACA 108.7 109.4
CL1 CAY CAI 119.3 120.0
CL1 CAY CAX 122.5 120.0
CL2 CAZ CAI 117.1 120.0
CL2 CAZ CBB 121.8 119.9
CBA CAH HAH 117.8 119.2
NAT CAH HAH 117.8 119.2
CAY CAI CAZ 122.8 120.1
CAZ CAI HAI 118.6 119.9
CAI CAZ CBB 121.1 120.0
CAY CAI HAI 118.7 119.9
CAI CAY CAX 118.2 120.1
CBB CAJ HAJ 118.2 120.0
CAX CAJ HAJ 118.1 120.1
CBD CAK CBF 119.4 119.8
CBD CAK HAK 120.3 120.1
CBF CAK HAK 120.3 120.1
CAK CBF NAT 118.6 120.6
CBC CAL CBG 124.0 119.8
CBC CAL HAL 118.0 120.0
CBG CAL HAL 118.0 120.1
CAL CBG CBE 125.5 121.0
CAL CBG CBF 114.1 120.0
CAN CAM HAM 109.3 109.4
CAN CAM HAMA 109.2 109.4
CAM CAN HAN 110.3 109.4
CAM CAN HANA 110.3 109.4
HAM CAM HAMA 109.7 109.5
OAW CAN HAN 110.3 109.5
OAW CAN HANA 110.3 109.5
HAN CAN HANA 108.6 109.5
NBI CAO HAO 109.5 109.5
NBI CAO HAOA 109.4 109.5
NBI CAO HAOB 109.5 109.5
CAO NBI CAR 111.2 111.0
CAO NBI CAS 112.5 111.0
HAO CAO HAOA 109.4 109.4
HAO CAO HAOB 109.4 109.5
HAOA CAO HAOB 109.5 109.5
NBH CAP HAP 108.3 109.5
NBH CAP HAPA 108.4 109.5
CAR CAP HAP 108.4 109.5
CAR CAP HAPA 108.3 109.5
HAP CAP HAPA 110.6 109.5
CAS CAQ NBH 109.6 109.4
CAS CAQ HAQ 109.4 109.4
CAS CAQ HAQA 109.4 109.5
NBH CAQ HAQ 109.4 109.5
NBH CAQ HAQA 109.5 109.5
HAQ CAQ HAQA 109.5 109.4
NBI CAR HAR 108.6 109.5
NBI CAR HARA 108.6 109.5
HAR CAR HARA 110.3 109.5
NBI CAS HAS 107.9 109.4
NBI CAS HASA 107.9 109.5
HAS CAS HASA 111.0 109.4
CBB NAU CBE 133.7 120.0
CBB NAU HNAU 113.2 120.0
CBE NAU HNAU 113.2 120.0
NAU CBE CBA 119.5 121.1
OAV CBC CBD 124.5 119.7
OAW CBD CBC 120.4 119.7
H01 C01 H01A 109.4 109.5
H01 C01 H01B 109.4 109.5
H01A C01 H01B 109.5 109.5

Torsion Angles for DB8

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
HAA CAA OAV HAAA 240.0 240.0
HAA CAA OAV HAAB 120.0 120.0
HAAA CAA OAV HAAB 240.0 240.0
CAA OAV CBC CBD 93.3 179.5
OAV CAA HAA HAAA 120.0 120.0
OAV CAA HAA HAAB 240.0 240.0
HAA CAA OAV CBC 180.0 180.0
HAAA CAA HAA HAAB 119.9 120.0
OAV CAA HAAA HAA 240.0 240.0
OAV CAA HAAA HAAB 120.0 120.0
HAAA CAA OAV CBC 300.0 300.0
HAA CAA HAAA HAAB 240.1 240.0
OAV CAA HAAB HAA 120.0 120.0
OAV CAA HAAB HAAA 240.0 240.0
HAAB CAA OAV CBC 60.0 60.0
HAA CAA HAAB HAAA 119.9 120.0
CAM CAC NBH HAC 240.0 120.0
CAM CAC NBH HACA 120.0 240.0
HAC CAC NBH HACA 240.0 120.0
NBH CAC CAM HAC 120.0 240.0
NBH CAC CAM HACA 240.0 120.1
HAC CAC CAM HACA 120.0 240.1
NBH CAC HAC HACA 121.0 240.0
CAM CAC HAC HACA 239.1 120.0
NBH CAC HACA HAC 239.0 120.0
CAM CAC HACA HAC 120.9 240.0
CL1 CAY CAI CAZ 179.2 179.9
CL1 CAY CAI HAI 359.2 359.7
CAI CAY CL1 CAX 180.9 180.1
CAY CAI CAZ CL2 179.8 180.0
CL2 CAZ CAI HAI 359.8 0.2
CAI CAZ CL2 CBB 181.1 180.1
NAT CAH CBA HAH 180.0 179.8
CBA CAH NAT HAH 180.0 180.2
CL2 CAZ CAI CBB 179.0 179.9
CAY CAI CAZ HAI 180.0 179.8
CAZ CAI CAY CAX 0.0 360.0
CL1 CAY CAI CAX 179.1 179.9
CL2 CAZ CAI CAY 179.8 180.0
CAZ CAI CAY HAI 180.0 180.2
CAY CAI CAZ CBB 0.8 0.0
CAY CAI HAI CAZ 180.0 180.2
HAI CAI CAZ CBB 180.8 180.3
HAI CAI CAY CAX 180.0 179.8
CL2 CAZ CBB CAJ 179.1 180.0
CAI CAZ CBB CAJ 358.0 359.9
CAX CAJ CBB HAJ 180.0 180.0
CL1 CAY CAX CAJ 181.2 180.1
CAI CAY CAX CAJ 0.3 360.0
CBB CAJ CAX HAJ 180.0 180.0
CBF CAK CBD HAK 180.0 180.0
CBD CAK CBF NAT 180.4 180.0
CBD CAK CBF HAK 180.0 180.0
CAL CBG CBF CAK 359.9 359.9
CBD CAK HAK CBF 180.0 180.0
HAK CAK CBF NAT 0.4 360.0
CAA OAV CBC CAL 275.3 0.0
CBG CAL CBC HAL 180.0 180.1
CBC CAL CBG CBE 180.7 180.0
CBC CAL CBG CBF 360.0 359.7
CBC CAL CBG HAL 180.0 179.9
CBC CAL HAL CBG 180.0 180.1
HAL CAL CBG CBE 0.7 0.1
HAL CAL CBG CBF 180.0 179.8
CAN CAM CAC HAC 351.9 300.0
CAN CAM CAC HACA 232.0 60.0
HAM CAM CAN HAMA 120.0 120.0
OAW CAN CAM HAN 240.0 240.0
OAW CAN CAM HANA 120.0 120.0
HAN CAN CAM HANA 240.0 240.0
HAM CAM CAC HAC 111.9 60.0
HAM CAM CAC HACA 352.0 179.9
CAN CAM HAM HAMA 240.3 240.0
HAM CAM CAN HAN 185.6 180.0
HAM CAM CAN HANA 305.6 300.0
HAMA CAM CAC HAC 231.9 180.1
HAMA CAM CAC HACA 112.0 300.0
CAN CAM HAMA HAM 119.7 120.0
HAMA CAM CAN HAN 65.7 60.0
HAMA CAM CAN HANA 185.6 180.0
OAW CAN CAM HAM 65.6 60.0
OAW CAN CAM HAMA 305.6 300.0
CAM CAN OAW HAN 120.0 120.0
CAM CAN OAW HANA 240.0 240.0
HAN CAN OAW HANA 120.0 120.1
HAN CAN CAM HAM 185.6 180.0
HAN CAN CAM HAMA 65.7 60.0
CAM CAN HAN HANA 121.0 120.0
OAW CAN HAN HANA 238.9 240.0
HANA CAN CAM HAM 305.6 300.0
HANA CAN CAM HAMA 185.6 180.0
CAM CAN HANA HAN 239.0 240.0
OAW CAN HANA HAN 121.1 120.1
HAO CAO NBI HAOA 240.0 240.1
HAO CAO NBI HAOB 120.0 120.0
HAOA CAO NBI HAOB 240.0 240.0
CAO NBI CAR HAR 62.6 56.8
CAO NBI CAR HARA 302.6 296.8
CAO NBI CAS HAS 60.8 63.2
CAO NBI CAS HASA 300.7 303.2
NBI CAO HAO HAOA 120.0 120.0
NBI CAO HAO HAOB 240.0 240.0
HAO CAO NBI CAR 180.0 183.8
HAO CAO NBI CAS 56.9 60.0
HAOA CAO HAO HAOB 120.0 120.0
NBI CAO HAOA HAO 240.0 240.0
NBI CAO HAOA HAOB 120.0 120.0
HAOA CAO NBI CAR 300.0 303.8
HAOA CAO NBI CAS 176.9 179.9
HAO CAO HAOA HAOB 240.0 240.0
NBI CAO HAOB HAO 120.1 120.0
NBI CAO HAOB HAOA 240.0 240.0
HAOB CAO NBI CAR 60.0 63.8
HAOB CAO NBI CAS 296.9 300.0
HAO CAO HAOB HAOA 120.0 120.0
CAP NBH CAC HAC 314.7 173.7
CAP NBH CAC HACA 74.7 53.8
CAR CAP NBH HAP 240.0 119.9
CAR CAP NBH HAPA 120.0 240.0
HAP CAP NBH HAPA 240.0 120.1
CAO NBI CAR CAP 182.6 176.8
NBH CAP CAR HAP 120.0 240.1
NBH CAP CAR HAPA 240.0 120.0
HAP CAP CAR HAPA 120.0 239.9
NBH CAP HAP HAPA 118.6 239.9
CAR CAP HAP HAPA 241.4 120.0
NBH CAP HAPA HAP 241.4 120.1
CAR CAP HAPA HAP 118.6 240.0
CAO NBI CAS CAQ 180.7 183.2
NBH CAQ CAS HAQ 240.0 240.0
NBH CAQ CAS HAQA 120.0 120.0
HAQ CAQ CAS HAQA 240.0 240.0
CAQ NBH CAC HAC 189.9 50.0
CAQ NBH CAC HACA 309.9 290.0
CAQ NBH CAP HAP 66.8 180.7
CAQ NBH CAP HAPA 186.8 60.6
CAS CAQ NBH HAQ 120.0 119.9
CAS CAQ NBH HAQA 240.0 239.9
HAQ CAQ NBH HAQA 120.0 120.0
CAS CAQ HAQ NBH 239.9 240.1
CAS CAQ HAQ HAQA 119.9 120.0
NBH CAQ HAQ HAQA 240.0 239.9
CAS CAQ HAQA NBH 120.1 120.0
CAS CAQ HAQA HAQ 240.1 240.0
NBH CAQ HAQA HAQ 120.0 120.1
CAR NBI CAO HAO 180.0 183.8
CAR NBI CAO HAOA 300.0 303.8
CAR NBI CAO HAOB 60.0 63.8
CAO NBI CAR CAS 235.1 236.1
NBI CAR CAP HAP 292.3 178.4
NBI CAR CAP HAPA 172.3 298.4
HAR CAR NBI HARA 120.0 120.0
HAR CAR CAP HAP 52.3 298.3
HAR CAR CAP HAPA 292.2 58.4
NBI CAR HAR HARA 241.1 239.9
HARA CAR CAP HAP 172.3 58.3
HARA CAR CAP HAPA 52.2 178.4
NBI CAR HARA HAR 118.9 120.0
CAS NBI CAO HAO 56.9 60.0
CAS NBI CAO HAOA 176.9 179.9
CAS NBI CAO HAOB 296.9 300.0
CAO NBI CAS CAR 124.1 123.9
NBI CAS CAQ NBH 301.8 301.6
NBI CAS CAQ HAQ 61.8 61.6
NBI CAS CAQ HAQA 181.8 181.6
CAS NBI CAR HAR 187.5 180.7
CAS NBI CAR HARA 67.5 60.7
HAS CAS NBI HASA 120.0 120.0
HAS CAS CAQ NBH 61.8 61.6
HAS CAS CAQ HAQ 181.8 181.6
HAS CAS CAQ HAQA 301.7 301.5
NBI CAS HAS HASA 241.9 240.0
HASA CAS CAQ NBH 181.8 181.6
HASA CAS CAQ HAQ 301.8 301.6
HASA CAS CAQ HAQA 61.8 61.6
NBI CAS HASA HAS 118.1 120.0
CBF NAT CAH HAH 179.6 180.1
NAT CBF CAK HAK 0.4 360.0
CAL CBG CBF NAT 179.8 180.0
CL2 CAZ CBB NAU 3.2 0.1
CAI CAZ CBB NAU 182.1 180.0
NAU CBB CAJ HAJ 357.8 360.0
CBE NAU CBB HNAU 180.0 180.0
CBB NAU CBE CBA 321.3 26.1
CAL CBG CBE NAU 357.8 0.0
CBB NAU CBE HNAU 180.0 180.0
CBB NAU HNAU CBE 180.0 180.0
HNAU NAU CBE CBA 141.3 206.1
CBC OAV CAA HAA 180.0 180.0
CBC OAV CAA HAAA 300.0 300.0
CBC OAV CAA HAAB 60.0 60.0
OAV CBC CAL CBG 177.9 180.0
OAV CBC CAL HAL 357.9 360.0
OAW CBD CBC OAV 356.2 359.9
OAW CBD CAK CBF 185.9 180.3
OAW CBD CAK HAK 5.9 0.3
CBD OAW CAN HAN 131.7 60.0
CBD OAW CAN HANA 11.6 300.0
OAV CBC CBD OAW 356.2 359.9
CL1 CAY CAX CAI 180.9 180.1
CAX CAY CAI CAZ 0.0 360.0
CAX CAY CAI HAI 180.0 179.8
CAY CAX CAJ HAJ 178.4 180.0
CL2 CAZ CBB CAI 181.1 180.1
CBB CAZ CAI HAI 180.8 180.3
CAZ CBB CAJ HAJ 182.3 180.0
CAZ CBB NAU CBE 238.8 67.3
CAZ CBB NAU HNAU 58.8 247.3
CBE CBA CAH HAH 181.0 180.0
CAL CBG CBE CBA 180.7 180.0
CBA CBE NAU HNAU 141.3 206.1
CBC CBD CAK CBF 359.5 0.3
CBC CBD CAK HAK 179.5 180.3
CBD CBC CAL CBG 359.8 0.6
CBD CBC CAL HAL 179.8 180.5
CBE CBG CAL HAL 0.7 0.1
CAL CBG CBE CBF 179.3 179.7
CBG CBE NAU HNAU 324.2 26.1
CBG CBF CAK HAK 180.4 180.0
CBF CBG CAL HAL 180.0 179.8
CAL CBG CBF CBE 180.7 180.3
H01A C01 H01 H01B 120.0 120.0
H01 C01 H01A H01B 240.1 240.0
H01 C01 H01B H01A 120.0 120.0