PDB Chemical Component DAY

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DAY

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C10 C1 1.526 1.504
C2 C1 1.343 1.498
C1 H1 1.100 1.090
O1 C11 1.427 1.429
O1 HO1 0.950 0.966
C3 C2 1.498 1.389
C2 C22 1.608 1.388
C4 C3 1.556 1.463
N1 C3 1.463 1.356
C4 C5 1.378 1.351
C4 H4 1.080 1.080
C6 C5 1.585 1.475
C5 C10 1.554 1.491
C1 H1A 1.101 1.090
C28 C6 1.429 1.508
C6 C7 1.510 1.328
C7 C8 1.569 1.494
C7 H7 1.080 1.080
C8 C14 1.557 1.514
C8 C9 1.619 1.535
C8 H8 1.100 1.091
C10 C9 1.587 1.527
C9 C11 1.593 1.523
C9 H9 1.099 1.090
C19 C10 1.592 1.530
C11 C12 1.517 1.541
C11 H11 1.100 1.090
C13 C12 1.593 1.515
C12 H12 1.100 1.090
C12 H12A 1.100 1.090
C14 C13 1.608 1.555
C18 C13 1.628 1.529
C13 C17 1.525 1.525
C15 C14 1.592 1.532
C14 H14 1.100 1.090
C15 C16 1.513 1.553
C15 H15 1.100 1.090
C15 H15A 1.100 1.090
C30 C16 1.522 1.530
C16 C17 1.595 1.549
C16 H16 1.101 1.091
C17 O2 1.474 1.429
C17 C20 1.592 1.507
C18 H18 1.100 1.091
C18 H18A 1.100 1.090
C18 H18B 1.100 1.089
C19 H19 1.100 1.090
C19 H19A 1.100 1.089
C19 H19B 1.100 1.090
O3 C20 1.224 1.207
C20 C21 1.553 1.507
C21 O4 1.419 1.429
C21 H21 1.100 1.090
C21 H21A 1.100 1.090
C24 N1 1.260 1.400
N1 N2 1.312 1.404
O2 HO2 0.950 0.967
O4 HO4 0.950 0.966
N2 C22 1.574 1.313
C22 H22 1.080 1.079
C25 C23 1.363 1.381
C23 C24 1.406 1.389
C23 H23 1.080 1.079
C27 C24 1.452 1.388
C26 C25 1.489 1.383
C25 H25 1.080 1.080
C26 C29 1.455 1.383
C26 H26 1.079 1.080
C29 C27 1.566 1.381
C27 H27 1.079 1.080
C29 H29 1.080 1.080
C28 H28 1.100 1.090
C28 H28A 1.100 1.090
C28 H28B 1.100 1.090
C30 H30 1.100 1.090
C30 H30A 1.101 1.090
C30 H30B 1.100 1.091

Bond Angles for DAY

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C10 C1 H1 103.7 108.6
C10 C1 H1A 99.3 108.6
C2 C1 H1 103.7 108.6
C2 C1 H1A 99.3 108.7
H1 C1 H1A 125.6 108.6
C11 O1 HO1 109.5 114.0
O1 C11 C9 112.7 109.2
O1 C11 C12 106.4 109.2
O1 C11 H11 110.8 109.2
C3 C2 C22 107.8 107.3
C2 C22 H22 133.8 125.6
C5 C4 H4 119.3 121.0
C4 C5 C10 122.5 124.3
C6 C5 C10 121.7 118.0
C5 C10 C9 111.3 108.7
C6 C7 C8 120.7 123.0
C6 C7 H7 119.7 118.5
C8 C7 H7 119.6 118.6
C7 C8 C14 113.6 112.5
C7 C8 C9 111.5 110.9
C7 C8 H8 104.1 109.0
C9 C8 C14 105.9 107.0
C14 C8 H8 109.8 108.9
C8 C14 C13 113.6 106.5
C8 C14 H14 96.3 110.5
C9 C8 H8 112.1 108.4
C8 C9 C11 113.2 111.4
C8 C9 H9 105.8 108.7
C10 C9 C11 109.7 111.6
C10 C9 H9 109.5 107.7
C11 C9 H9 107.3 108.6
C9 C11 C12 113.1 110.7
C9 C11 H11 103.7 109.3
C12 C11 H11 110.2 109.2
C11 C12 H12 108.3 109.8
C11 C12 H12A 107.5 109.8
C13 C12 H12 108.3 109.8
C13 C12 H12A 107.5 109.9
H12 C12 H12A 112.3 109.8
C14 C13 C17 98.6 103.3
C13 C17 C16 102.1 105.3
C13 C17 O2 112.1 110.3
C13 C17 C20 111.1 110.3
C15 C14 H14 109.4 111.1
C16 C15 H15 111.3 110.7
C16 C15 H15A 112.4 110.7
C15 C16 C17 107.1 106.4
C15 C16 H16 113.7 110.1
H15 C15 H15A 105.5 110.8
C30 C16 H16 108.8 110.1
C17 C16 H16 108.4 110.0
C16 C17 O2 108.8 110.3
C16 C17 C20 111.4 110.3
C20 C17 O2 110.9 110.3
C17 O2 HO2 109.5 114.0
C17 C20 C21 123.7 120.0
H18 C18 H18A 109.4 109.4
H18 C18 H18B 109.5 109.5
H18A C18 H18B 109.5 109.5
H19 C19 H19A 109.5 109.5
H19 C19 H19B 109.5 109.5
H19A C19 H19B 109.5 109.5
C20 C21 O4 113.5 109.5
C20 C21 H21 108.1 109.5
C20 C21 H21A 107.2 109.5
O4 C21 H21 108.2 109.5
O4 C21 H21A 107.2 109.4
C21 O4 HO4 109.5 114.1
H21 C21 H21A 112.7 109.5
N1 N2 C22 124.1 109.0
N2 C22 H22 133.8 125.7
C25 C23 H23 117.2 120.1
C24 C23 H23 117.2 120.0
C26 C25 H25 115.7 120.0
C29 C26 H26 124.7 119.9
C26 C29 C27 118.6 120.1
C26 C29 H29 120.7 119.9
C29 C27 H27 117.2 120.0
H28 C28 H28A 109.5 109.5
H28 C28 H28B 109.4 109.5
H28A C28 H28B 109.5 109.5
H30 C30 H30A 109.5 109.5
H30 C30 H30B 109.4 109.4
H30A C30 H30B 109.5 109.5

Torsion Angles for DAY

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C10 H1 240.0 121.0
C2 C1 C10 H1A 109.7 238.9
H1 C1 C10 H1A 229.7 118.0
C10 C1 C2 H1 120.0 239.0
C10 C1 C2 H1A 250.3 121.0
H1 C1 C2 H1A 130.3 242.0
C10 C1 H1 H1A 112.3 242.0
C2 C1 H1 H1A 247.7 118.0
C8 C9 C11 O1 292.5 295.7
C10 C9 C11 O1 57.3 57.4
O1 C11 C9 H9 176.1 176.0
C9 C11 O1 C12 124.5 121.2
C9 C11 O1 H11 244.3 240.6
C12 C11 O1 H11 119.8 119.3
O1 C11 C12 H12 193.2 182.7
O1 C11 C12 H12A 314.8 303.6
HO1 O1 C11 C9 185.6 180.0
HO1 O1 C11 C12 61.1 58.7
HO1 O1 C11 H11 301.2 299.4
C3 C2 C1 H1 239.9 115.8
C3 C2 C1 H1A 109.6 233.8
C3 C2 C22 H22 182.1 180.3
C22 C2 C1 H1 60.1 295.7
C22 C2 C1 H1A 289.8 53.7
N1 N2 C22 C2 11.1 360.0
N2 C22 C2 H22 180.0 180.0
C4 C3 C2 C22 177.6 179.2
N1 C3 C2 C22 347.5 359.5
C6 C5 C4 C10 196.2 181.6
C4 C5 C10 C9 223.1 221.0
H4 C4 C5 C10 182.4 183.4
C6 C5 C4 H4 18.6 5.0
C4 C5 C6 C10 163.9 178.5
C6 C5 C10 C9 25.6 39.4
C5 C10 C1 H1 123.2 248.9
C5 C10 C1 H1A 253.5 130.9
C10 C5 C4 H4 182.4 183.4
C5 C10 C9 C11 180.4 175.8
C5 C10 C9 H9 62.9 56.6
C10 C1 H1A H1 245.7 118.0
C2 C1 H1A H1 114.3 242.0
C28 C6 C7 H7 1.1 1.0
C7 C6 C5 C10 0.5 350.9
C8 C7 C6 H7 180.0 180.0
C6 C7 C8 C14 209.9 216.2
C6 C7 C8 C9 329.4 336.0
C6 C7 C8 H8 90.4 95.3
C6 C7 C8 H7 180.0 180.0
C9 C8 C7 C14 119.6 119.8
C14 C8 C7 H8 119.4 120.9
C7 C8 C14 C13 182.0 187.2
C7 C8 C14 H14 59.3 67.1
C9 C8 C7 H8 239.0 240.8
C7 C8 C9 C11 180.7 177.0
C7 C8 C9 H9 297.9 296.6
C6 C7 H7 C8 180.0 180.0
H7 C7 C8 C14 29.9 36.2
H7 C7 C8 C9 149.5 156.0
H7 C7 C8 H8 270.4 275.3
C14 C8 C7 H7 29.9 36.2
C7 C8 C14 C9 122.7 122.0
C7 C8 C14 H8 243.9 239.0
C9 C8 C14 H8 121.2 117.0
C14 C8 C9 C11 304.8 300.0
C14 C8 C9 H9 62.0 59.6
C8 C14 C13 C17 179.2 166.4
C15 C14 C8 H14 243.3 232.3
O1 C11 C9 C8 292.5 295.7
C5 C10 C9 C8 306.4 299.0
C9 C8 C7 H7 149.5 156.0
C7 C8 C9 C14 235.9 237.0
C7 C8 C9 H8 116.2 119.6
C14 C8 C9 H8 240.3 242.6
C9 C8 C14 C13 59.3 65.1
C9 C8 C14 H14 296.6 305.1
C10 C9 C8 C11 236.0 236.6
C10 C9 C8 H9 118.8 117.0
C11 C9 C8 H9 242.8 240.4
C8 C9 C11 C12 53.2 56.0
C8 C9 C11 H11 172.6 176.2
H8 C8 C7 H7 270.4 275.3
C7 C8 H8 C14 122.0 123.1
C7 C8 H8 C9 239.4 239.2
C9 C8 H8 C14 242.6 243.9
H8 C8 C14 C13 298.1 308.2
H8 C8 C14 H14 175.5 188.1
H8 C8 C9 C11 64.5 57.4
H8 C8 C9 H9 181.7 177.0
C9 C10 C1 H1 253.0 16.6
C9 C10 C1 H1A 23.3 258.6
O1 C11 C9 C10 57.3 57.4
C10 C9 C8 C14 180.8 176.6
C10 C9 C8 H8 300.5 294.0
C8 C9 C10 C11 125.9 123.2
C8 C9 C10 H9 243.5 242.4
C11 C9 C10 H9 117.5 119.2
C10 C9 C11 C12 178.0 177.7
C10 C9 C11 H11 297.4 298.0
C9 C11 O1 HO1 185.6 180.0
O1 C11 C9 C12 239.3 239.7
O1 C11 C9 H11 119.8 119.4
C11 C9 C8 C14 304.8 300.0
C11 C9 C8 H8 64.5 57.4
C8 C9 C11 H9 116.3 119.6
C10 C9 C11 H9 241.1 241.4
C12 C11 C9 H11 240.6 239.7
C9 C11 C12 H12 69.0 62.4
C9 C11 C12 H12A 190.5 183.3
H9 C9 C8 C14 62.0 59.6
H9 C9 C8 H8 181.7 177.0
C8 C9 H9 C11 238.9 238.7
C10 C9 H9 C11 119.0 121.1
H9 C9 C11 C12 296.9 296.3
H9 C9 C11 H11 56.3 56.6
C19 C10 C1 H1 19.3 130.3
C19 C10 C1 H1A 149.6 12.3
C19 C10 C9 H9 176.3 169.5
C12 C11 O1 HO1 61.1 58.7
O1 C11 C12 C9 124.2 120.3
O1 C11 C12 H11 239.8 240.6
C12 C11 C9 H9 296.9 296.3
C9 C11 C12 H11 115.6 120.3
C13 C12 C11 H12 240.0 240.5
C13 C12 C11 H12A 118.5 119.6
H12 C12 C11 H12A 238.5 239.1
H11 C11 O1 HO1 301.2 299.4
O1 C11 H11 C9 238.9 240.6
O1 C11 H11 C12 117.5 119.4
H11 C11 C9 H9 56.3 56.6
C9 C11 H11 C12 238.6 238.8
H11 C11 C12 H12 313.4 302.1
H11 C11 C12 H12A 74.9 62.9
C8 C14 C13 C12 301.0 290.7
C13 C12 C11 H11 193.4 182.6
C11 C12 C13 H12 120.0 119.5
C11 C12 C13 H12A 241.6 240.4
H12 C12 C13 H12A 121.5 120.9
H12 C12 C11 H11 313.4 302.1
C11 C12 H12 H12A 118.5 120.9
C13 C12 H12 H12A 241.4 239.0
H12A C12 C11 H11 74.9 62.9
C11 C12 H12A H12 241.0 239.2
C13 C12 H12A H12 119.0 120.9
C13 C14 C8 H8 298.1 308.2
C8 C14 C13 H14 249.4 240.0
C14 C13 C12 H12 292.4 304.1
C14 C13 C12 H12A 170.9 183.2
C14 C13 C17 C16 312.6 330.7
C14 C13 C17 O2 68.9 89.6
C14 C13 C17 C20 193.7 211.7
C18 C13 C12 H12 173.4 185.3
C18 C13 C12 H12A 51.8 64.4
C18 C13 C17 O2 182.2 205.8
C18 C13 C17 C20 307.0 327.9
C17 C13 C12 H12 42.7 59.9
C17 C13 C12 H12A 281.2 299.0
C15 C16 C17 C13 30.1 3.5
C13 C17 C16 H16 267.0 244.2
C16 C17 C13 O2 243.7 241.1
C16 C17 C13 C20 118.9 119.0
C20 C17 C13 O2 124.8 122.1
C13 C17 O2 HO2 118.5 179.9
C13 C17 C20 C21 292.9 270.7
C15 C14 C8 H8 58.7 60.4
C8 C14 C15 H14 109.8 127.4
C15 C14 C13 C17 48.7 44.4
H14 C14 C8 H8 175.5 188.1
C8 C14 H14 C13 120.3 117.6
H14 C14 C13 C17 289.9 286.4
C13 C17 C16 C15 30.1 3.5
C16 C15 C14 H14 93.5 75.9
H15 C15 C16 H15A 118.1 123.2
C30 C16 C15 H16 120.0 121.6
C17 C16 C15 H16 240.2 240.8
C15 C16 C17 O2 271.4 244.5
C15 C16 C17 C20 148.8 122.4
H15 C15 C14 H14 213.5 194.2
C16 C15 H15 H15A 237.9 236.8
H15 C15 C16 C17 241.3 265.7
H15 C15 C16 H16 1.0 24.9
H15A C15 C14 H14 331.6 317.6
C16 C15 H15A H15 121.4 123.1
H15A C15 C16 C17 123.2 142.5
H15A C15 C16 H16 242.9 261.6
C30 C16 C15 H15 121.0 146.5
C30 C16 C15 H15A 2.9 23.2
C15 C16 C30 H16 237.0 238.4
C17 C16 C30 H16 120.0 121.5
C13 C17 C16 O2 118.7 118.9
C13 C17 C16 C20 241.3 241.0
C17 C16 C15 H15 241.3 265.7
C17 C16 C15 H15A 123.2 142.5
C15 C16 C17 H16 123.1 119.2
C30 C16 C17 H16 239.8 238.5
C20 C17 C16 O2 237.4 237.9
C16 C17 O2 HO2 230.7 295.8
C16 C17 C20 C21 179.7 154.8
H16 C16 C15 H15 1.0 24.9
H16 C16 C15 H15A 242.9 261.6
C15 C16 H16 C17 241.0 243.1
H16 C16 C17 O2 148.4 125.3
H16 C16 C17 C20 25.7 3.2
C13 C17 O2 C16 247.8 244.1
C13 C17 O2 C20 124.9 122.0
O2 C17 C16 H16 148.4 125.3
C16 C17 O2 C20 237.1 237.9
O2 C17 C20 C21 58.4 32.7
C13 C17 C20 C16 113.2 115.9
C13 C17 C20 O2 234.6 238.0
C20 C17 C16 H16 25.7 3.2
C16 C17 C20 O2 121.4 122.1
C20 C17 O2 HO2 353.6 57.9
C17 C20 C21 O4 165.1 180.0
C17 C20 C21 H21 285.2 300.0
C17 C20 C21 H21A 46.9 60.0
H18A C18 H18 H18B 120.0 120.0
H18 C18 H18A H18B 240.0 240.0
H18 C18 H18B H18A 120.0 119.9
H19A C19 H19 H19B 120.0 120.0
H19 C19 H19A H19B 240.0 239.9
H19 C19 H19B H19A 120.0 120.1
O3 C20 C21 O4 345.0 0.0
O3 C20 C21 H21 105.0 120.0
O3 C20 C21 H21A 226.8 240.1
C21 C20 C17 O2 58.4 32.7
O4 C21 C20 H21 240.0 240.0
O4 C21 C20 H21A 118.3 120.0
C20 C21 O4 HO4 346.2 179.9
H21 C21 C20 H21A 238.3 240.0
C20 C21 O4 H21 120.0 120.0
C20 C21 O4 H21A 241.7 240.0
H21 C21 O4 H21A 121.8 120.0
C20 C21 H21 O4 236.7 240.0
C20 C21 H21 H21A 118.3 120.0
O4 C21 H21 H21A 241.7 240.0
H21 C21 O4 HO4 226.2 59.9
C20 C21 H21A O4 122.3 120.0
C20 C21 H21A H21 241.1 240.0
O4 C21 H21A H21 118.9 120.0
H21A C21 O4 HO4 104.5 299.9
N1 N2 C22 H22 191.1 180.0
HO4 O4 C21 H21 226.2 59.9
HO4 O4 C21 H21A 104.5 299.9
C2 C22 N2 H22 180.0 180.0
C24 C23 C25 H23 180.0 179.7
C25 C23 C24 H23 180.0 180.3
C27 C24 C23 H23 181.0 179.9
C26 C25 C23 H23 180.5 180.3
H25 C25 C23 H23 0.5 0.3
C29 C26 C25 H25 178.9 180.1
C26 C29 C27 H27 181.2 180.1
H26 C26 C25 H25 358.8 360.0
H26 C26 C29 C27 180.3 179.8
H26 C26 C29 H29 0.3 0.1
C27 C29 C26 H26 180.3 179.8
C26 C29 C27 H29 180.0 180.3
H29 C29 C26 H26 0.3 0.1
C26 C29 H29 C27 180.0 179.7
H29 C29 C27 H27 1.2 359.7
H28A C28 H28 H28B 120.0 120.0
H28 C28 H28A H28B 240.0 240.0
H28 C28 H28B H28A 120.0 120.0
H30 C30 C16 H16 93.6 180.1
H30A C30 H30 H30B 120.0 120.0
H30A C30 C16 H16 213.6 300.1
H30 C30 H30A H30B 240.1 240.0
H30B C30 C16 H16 333.6 60.1
H30 C30 H30B H30A 120.0 120.0