PDB Chemical Component DAV
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DAV
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OXT |
C |
1.237 |
1.342 |
| OXT |
HXT |
0.950 |
0.967 |
| O |
C |
1.251 |
1.208 |
| CB |
CG |
1.508 |
1.531 |
| CB |
C1 |
1.477 |
1.530 |
| CB |
HCB1 |
1.115 |
1.090 |
| CB |
HCB2 |
1.115 |
1.089 |
| CG |
CD |
1.497 |
1.530 |
| CG |
HCG1 |
1.116 |
1.090 |
| CG |
HCG2 |
1.114 |
1.089 |
| CD |
N |
1.475 |
1.470 |
| CD |
HCD1 |
1.114 |
1.090 |
| CD |
HCD2 |
1.115 |
1.089 |
| N |
H |
1.040 |
1.009 |
| N |
H2 |
1.040 |
1.009 |
| N |
H3 |
1.040 |
1.009 |
| C |
C1 |
1.502 |
1.507 |
| C1 |
HCA1 |
1.114 |
1.090 |
| C1 |
HCA2 |
1.115 |
1.090 |
Bond Angles for DAV
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C |
OXT |
HXT |
123.8 |
120.0 |
| OXT |
C |
O |
123.8 |
120.0 |
| OXT |
C |
C1 |
117.3 |
120.0 |
| O |
C |
C1 |
118.9 |
120.0 |
| CG |
CB |
C1 |
108.1 |
109.4 |
| CG |
CB |
HCB1 |
112.7 |
109.4 |
| CG |
CB |
HCB2 |
112.7 |
109.5 |
| CB |
CG |
CD |
110.1 |
109.4 |
| CB |
CG |
HCG1 |
111.9 |
109.4 |
| CB |
CG |
HCG2 |
112.0 |
109.5 |
| C1 |
CB |
HCB1 |
112.7 |
109.4 |
| C1 |
CB |
HCB2 |
112.8 |
109.5 |
| CB |
C1 |
C |
114.0 |
109.5 |
| CB |
C1 |
HCA1 |
110.5 |
109.4 |
| CB |
C1 |
HCA2 |
110.5 |
109.5 |
| HCB1 |
CB |
HCB2 |
97.7 |
109.5 |
| CD |
CG |
HCG1 |
112.0 |
109.4 |
| CD |
CG |
HCG2 |
112.0 |
109.5 |
| CG |
CD |
N |
114.1 |
109.4 |
| CG |
CD |
HCD1 |
110.6 |
109.4 |
| CG |
CD |
HCD2 |
110.5 |
109.5 |
| HCG1 |
CG |
HCG2 |
98.4 |
109.5 |
| N |
CD |
HCD1 |
110.5 |
109.4 |
| N |
CD |
HCD2 |
110.5 |
109.5 |
| CD |
N |
H |
109.5 |
109.5 |
| CD |
N |
H2 |
109.5 |
109.4 |
| CD |
N |
H3 |
109.5 |
109.4 |
| HCD1 |
CD |
HCD2 |
99.8 |
109.5 |
| H |
N |
H2 |
109.4 |
109.5 |
| H |
N |
H3 |
109.5 |
109.5 |
| H2 |
N |
H3 |
109.5 |
109.5 |
| C |
C1 |
HCA1 |
110.6 |
109.4 |
| C |
C1 |
HCA2 |
110.5 |
109.5 |
| HCA1 |
C1 |
HCA2 |
99.8 |
109.5 |
Torsion Angles for DAV
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
OXT |
C1 |
180.7 |
180.1 |
| CB |
C1 |
C |
OXT |
139.6 |
180.0 |
| OXT |
C |
C1 |
HCA1 |
14.4 |
60.1 |
| OXT |
C |
C1 |
HCA2 |
264.8 |
300.1 |
| HXT |
OXT |
C |
O |
180.0 |
0.1 |
| HXT |
OXT |
C |
C1 |
359.3 |
180.0 |
| O |
C |
OXT |
HXT |
180.0 |
0.1 |
| OXT |
C |
O |
C1 |
179.3 |
179.9 |
| CB |
C1 |
C |
O |
318.9 |
359.9 |
| O |
C |
C1 |
HCA1 |
193.7 |
240.0 |
| O |
C |
C1 |
HCA2 |
84.2 |
120.0 |
| C1 |
CB |
CG |
HCB1 |
234.8 |
240.1 |
| C1 |
CB |
CG |
HCB2 |
125.3 |
120.0 |
| CG |
CB |
C1 |
C |
172.5 |
180.0 |
| CG |
CB |
C1 |
HCA1 |
297.8 |
299.9 |
| CG |
CB |
C1 |
HCA2 |
47.3 |
60.0 |
| HCB1 |
CB |
CG |
HCB2 |
250.6 |
239.9 |
| CD |
CG |
CB |
HCG1 |
234.7 |
119.9 |
| CD |
CG |
CB |
HCG2 |
125.3 |
240.0 |
| CB |
CG |
CD |
N |
120.8 |
180.0 |
| CB |
CG |
CD |
HCD1 |
246.0 |
60.1 |
| CB |
CG |
CD |
HCD2 |
355.6 |
300.0 |
| HCG1 |
CG |
CB |
HCG2 |
250.5 |
120.1 |
| OXT |
C |
C1 |
CB |
139.6 |
180.0 |
| O |
C |
C1 |
CB |
318.9 |
359.9 |
| CG |
CB |
C1 |
HCB1 |
125.2 |
119.9 |
| CG |
CB |
C1 |
HCB2 |
234.7 |
240.0 |
| C1 |
CB |
CG |
CD |
154.2 |
180.0 |
| C1 |
CB |
CG |
HCG1 |
279.5 |
60.1 |
| C1 |
CB |
CG |
HCG2 |
29.0 |
300.0 |
| HCB1 |
CB |
C1 |
HCB2 |
109.5 |
120.1 |
| C |
C1 |
CB |
HCA1 |
234.7 |
240.1 |
| C |
C1 |
CB |
HCA2 |
125.2 |
120.0 |
| HCA1 |
C1 |
CB |
HCA2 |
250.5 |
240.0 |
| CG |
CB |
HCB1 |
C1 |
237.3 |
240.1 |
| CG |
CB |
HCB1 |
HCB2 |
118.6 |
120.0 |
| HCB1 |
CB |
CG |
CD |
279.5 |
299.9 |
| HCB1 |
CB |
CG |
HCG1 |
44.7 |
180.0 |
| HCB1 |
CB |
CG |
HCG2 |
154.2 |
59.9 |
| C1 |
CB |
HCB1 |
HCB2 |
241.3 |
239.9 |
| HCB1 |
CB |
C1 |
C |
47.3 |
60.1 |
| HCB1 |
CB |
C1 |
HCA1 |
172.6 |
180.0 |
| HCB1 |
CB |
C1 |
HCA2 |
282.1 |
300.0 |
| CG |
CB |
HCB2 |
C1 |
122.8 |
120.0 |
| CG |
CB |
HCB2 |
HCB1 |
241.4 |
240.0 |
| HCB2 |
CB |
CG |
CD |
28.9 |
60.0 |
| HCB2 |
CB |
CG |
HCG1 |
154.2 |
300.1 |
| HCB2 |
CB |
CG |
HCG2 |
263.6 |
180.0 |
| C1 |
CB |
HCB2 |
HCB1 |
118.6 |
120.0 |
| HCB2 |
CB |
C1 |
C |
297.8 |
300.0 |
| HCB2 |
CB |
C1 |
HCA1 |
63.1 |
59.9 |
| HCB2 |
CB |
C1 |
HCA2 |
172.6 |
180.0 |
| CD |
CG |
CB |
C1 |
154.2 |
180.0 |
| CD |
CG |
CB |
HCB1 |
279.5 |
299.9 |
| CD |
CG |
CB |
HCB2 |
28.9 |
60.0 |
| CB |
CG |
CD |
HCG1 |
125.2 |
240.1 |
| CB |
CG |
CD |
HCG2 |
234.7 |
120.0 |
| HCG1 |
CG |
CD |
HCG2 |
109.5 |
239.9 |
| N |
CD |
CG |
HCD1 |
234.8 |
119.9 |
| N |
CD |
CG |
HCD2 |
125.2 |
240.0 |
| CG |
CD |
N |
H |
60.0 |
300.1 |
| CG |
CD |
N |
H2 |
300.0 |
180.0 |
| CG |
CD |
N |
H3 |
180.0 |
60.0 |
| HCD1 |
CD |
CG |
HCD2 |
250.5 |
120.1 |
| HCG1 |
CG |
CB |
C1 |
279.5 |
60.1 |
| HCG1 |
CG |
CB |
HCB1 |
44.7 |
180.0 |
| HCG1 |
CG |
CB |
HCB2 |
154.2 |
300.1 |
| CB |
CG |
HCG1 |
CD |
235.8 |
119.9 |
| CB |
CG |
HCG1 |
HCG2 |
117.9 |
240.0 |
| CD |
CG |
HCG1 |
HCG2 |
242.1 |
120.1 |
| HCG1 |
CG |
CD |
N |
355.6 |
299.9 |
| HCG1 |
CG |
CD |
HCD1 |
120.8 |
180.0 |
| HCG1 |
CG |
CD |
HCD2 |
230.4 |
59.9 |
| HCG2 |
CG |
CB |
C1 |
29.0 |
300.0 |
| HCG2 |
CG |
CB |
HCB1 |
154.2 |
59.9 |
| HCG2 |
CG |
CB |
HCB2 |
263.6 |
180.0 |
| CB |
CG |
HCG2 |
CD |
124.2 |
240.0 |
| CB |
CG |
HCG2 |
HCG1 |
242.1 |
120.0 |
| CD |
CG |
HCG2 |
HCG1 |
117.9 |
240.0 |
| HCG2 |
CG |
CD |
N |
246.1 |
60.0 |
| HCG2 |
CG |
CD |
HCD1 |
11.3 |
300.1 |
| HCG2 |
CG |
CD |
HCD2 |
120.9 |
180.0 |
| N |
CD |
CG |
HCG1 |
355.6 |
299.9 |
| N |
CD |
CG |
HCG2 |
246.1 |
60.0 |
| CG |
CD |
N |
HCD1 |
125.3 |
240.1 |
| CG |
CD |
N |
HCD2 |
234.8 |
120.0 |
| HCD1 |
CD |
N |
HCD2 |
109.5 |
239.9 |
| H |
N |
CD |
H2 |
120.0 |
120.1 |
| H |
N |
CD |
H3 |
240.0 |
240.0 |
| H2 |
N |
CD |
H3 |
120.0 |
120.0 |
| HCD1 |
CD |
CG |
HCG1 |
120.8 |
180.0 |
| HCD1 |
CD |
CG |
HCG2 |
11.3 |
300.1 |
| CG |
CD |
HCD1 |
N |
232.8 |
119.9 |
| CG |
CD |
HCD1 |
HCD2 |
116.4 |
239.9 |
| N |
CD |
HCD1 |
HCD2 |
243.6 |
120.0 |
| HCD1 |
CD |
N |
H |
294.7 |
60.0 |
| HCD1 |
CD |
N |
H2 |
174.7 |
299.9 |
| HCD1 |
CD |
N |
H3 |
54.7 |
179.9 |
| HCD2 |
CD |
CG |
HCG1 |
230.4 |
59.9 |
| HCD2 |
CD |
CG |
HCG2 |
120.9 |
180.0 |
| CG |
CD |
HCD2 |
N |
127.2 |
240.0 |
| CG |
CD |
HCD2 |
HCD1 |
243.6 |
120.0 |
| N |
CD |
HCD2 |
HCD1 |
116.3 |
240.0 |
| HCD2 |
CD |
N |
H |
185.2 |
180.0 |
| HCD2 |
CD |
N |
H2 |
65.2 |
60.0 |
| HCD2 |
CD |
N |
H3 |
305.2 |
300.0 |
| H |
N |
CD |
HCD1 |
294.7 |
60.0 |
| H |
N |
CD |
HCD2 |
185.2 |
180.0 |
| CD |
N |
H |
H2 |
240.0 |
240.0 |
| CD |
N |
H |
H3 |
120.0 |
120.0 |
| H2 |
N |
H |
H3 |
240.0 |
239.9 |
| H2 |
N |
CD |
HCD1 |
174.7 |
299.9 |
| H2 |
N |
CD |
HCD2 |
65.2 |
60.0 |
| CD |
N |
H2 |
H |
120.0 |
120.0 |
| CD |
N |
H2 |
H3 |
240.0 |
240.1 |
| H |
N |
H2 |
H3 |
120.0 |
120.0 |
| H3 |
N |
CD |
HCD1 |
54.7 |
179.9 |
| H3 |
N |
CD |
HCD2 |
305.2 |
300.0 |
| CD |
N |
H3 |
H |
240.0 |
240.0 |
| CD |
N |
H3 |
H2 |
120.0 |
119.9 |
| H |
N |
H3 |
H2 |
240.0 |
239.9 |
| C1 |
C |
OXT |
HXT |
359.3 |
180.0 |
| OXT |
C |
C1 |
O |
180.7 |
180.1 |
| C |
C1 |
CB |
HCB1 |
47.3 |
60.1 |
| C |
C1 |
CB |
HCB2 |
297.8 |
300.0 |
| CB |
C1 |
C |
HCA1 |
125.3 |
119.9 |
| CB |
C1 |
C |
HCA2 |
234.8 |
239.9 |
| HCA1 |
C1 |
C |
HCA2 |
109.5 |
120.0 |
| HCA1 |
C1 |
CB |
HCB1 |
172.6 |
180.0 |
| HCA1 |
C1 |
CB |
HCB2 |
63.1 |
59.9 |
| CB |
C1 |
HCA1 |
C |
232.8 |
240.1 |
| CB |
C1 |
HCA1 |
HCA2 |
116.4 |
120.1 |
| C |
C1 |
HCA1 |
HCA2 |
243.6 |
240.0 |
| HCA2 |
C1 |
CB |
HCB1 |
282.1 |
300.0 |
| HCA2 |
C1 |
CB |
HCB2 |
172.6 |
180.0 |
| CB |
C1 |
HCA2 |
C |
127.2 |
120.0 |
| CB |
C1 |
HCA2 |
HCA1 |
243.6 |
240.0 |
| C |
C1 |
HCA2 |
HCA1 |
116.4 |
120.0 |