PDB Chemical Component DAR

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DAR

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.458 1.469
N H 1.020 1.009
N H2 1.020 1.009
CA CB 1.532 1.531
CA C 1.521 1.507
CA HA 1.115 1.090
CB CG 1.500 1.530
CB HB2 1.114 1.090
CB HB3 1.115 1.090
CG CD 1.524 1.531
CG HG2 1.115 1.090
CG HG3 1.116 1.090
CD NE 1.466 1.465
CD HD2 1.114 1.089
CD HD3 1.116 1.090
NE CZ 1.330 1.368
NE HE 1.020 0.970
CZ NH1 1.332 1.331
CZ NH2 1.324 1.332
NH1 HH11 1.021 0.969
NH1 HH12 1.020 0.971
NH2 HH21 1.020 0.970
NH2 HH22 1.021 0.970
C O 1.232 1.342
C OXT 1.324 1.208
OXT HXT 0.949  

Bond Angles for DAR

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA N H 110.3 106.7
CA N H2 112.0 106.7
N CA CB 110.2 109.5
N CA C 115.5 109.5
N CA HA 104.5 109.5
H N H2 111.9 106.7
CB CA C 108.9 109.5
CB CA HA 111.7 109.4
CA CB CG 112.9 109.4
CA CB HB2 110.9 109.5
CA CB HB3 110.9 109.5
C CA HA 105.9 109.5
CA C O 121.0 120.0
CA C OXT 117.3 120.0
CG CB HB2 111.0 109.5
CG CB HB3 111.0 109.5
CB CG CD 111.5 109.4
CB CG HG2 111.5 109.5
CB CG HG3 111.5 109.5
HB2 CB HB3 99.4 109.5
CD CG HG2 111.4 109.5
CD CG HG3 111.5 109.4
CG CD NE 114.4 109.4
CG CD HD2 110.4 109.4
CG CD HD3 110.4 109.5
HG2 CG HG3 98.9 109.5
NE CD HD2 110.4 109.5
NE CD HD3 110.4 109.4
CD NE CZ 123.4 120.0
CD NE HE 107.3 120.0
HD2 CD HD3 99.9 109.5
CZ NE HE 107.3 120.0
NE CZ NH1 119.8 120.0
NE CZ NH2 120.6 119.9
NH1 CZ NH2 119.6 120.0
CZ NH1 HH11 119.8 120.0
CZ NH1 HH12 108.5 120.0
CZ NH2 HH21 119.6 120.0
CZ NH2 HH22 120.6 120.0
HH11 NH1 HH12 108.4 120.0
HH21 NH2 HH22 119.8 120.0
O C OXT 121.7 120.0
C OXT HXT 117.3  

Torsion Angles for DAR

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
H N CA H2 125.3 246.2
CB CA N C 124.0 120.0
CB CA N HA 239.9 240.0
N CA CB CG 66.2 65.0
N CA CB HB2 191.5 185.0
N CA CB HB3 301.0 305.0
C CA N HA 115.9 120.0
N CA C O 149.6 199.9
N CA C OXT 329.9 20.0
CA N H H2 234.7 113.7
H N CA CB 180.0 60.0
H N CA C 56.1 300.0
H N CA HA 300.1 180.0
CA N H2 H 124.4 246.2
H2 N CA CB 54.8 173.8
H2 N CA C 290.8 53.8
H2 N CA HA 174.9 293.7
CB CA N H 180.0 60.0
CB CA N H2 54.8 173.8
N CA CB C 232.3 240.0
N CA CB HA 115.6 120.0
C CA CB HA 243.3 240.0
CB CA C O 24.9 80.0
CB CA C OXT 205.3 260.0
CG CB CA HB2 234.8 240.0
CG CB CA HB3 125.2 120.0
CA CB CG CD 72.8 180.0
CA CB CG HG2 198.1 300.0
CA CB CG HG3 307.5 60.0
HB2 CB CA HB3 250.5 240.0
C CA N H 56.1 300.0
C CA N H2 290.8 53.8
N CA C CB 124.6 120.0
N CA C HA 244.9 240.0
CB CA C HA 120.3 120.0
C CA CB CG 193.9 185.0
C CA CB HB2 319.2 305.0
C CA CB HB3 68.7 65.0
O C CA OXT 179.6 179.9
CA C OXT HXT 180.0  
HA CA N H 300.1 180.0
HA CA N H2 174.9 293.7
N CA HA CB 240.9 240.0
N CA HA C 122.4 120.0
CB CA HA C 241.5 240.0
HA CA CB CG 310.6 305.0
HA CA CB HB2 75.8 65.0
HA CA CB HB3 185.3 185.0
HA CA C O 264.6 320.0
HA CA C OXT 85.0 140.0
CG CB CA C 193.9 185.0
CG CB CA HA 310.6 305.0
CA CB CG HB2 125.2 120.0
CA CB CG HB3 234.8 240.0
HB2 CB CG HB3 109.5 120.0
CD CG CB HG2 234.7 240.0
CD CG CB HG3 125.3 120.0
CB CG CD NE 281.7 180.0
CB CG CD HD2 47.0 300.0
CB CG CD HD3 156.5 60.0
HG2 CG CB HG3 250.6 240.0
HB2 CB CA C 319.2 305.0
HB2 CB CA HA 75.8 65.0
CA CB HB2 CG 233.7 240.0
CA CB HB2 HB3 116.8 120.0
CG CB HB2 HB3 243.1 240.0
HB2 CB CG CD 307.6 60.0
HB2 CB CG HG2 72.8 180.0
HB2 CB CG HG3 182.3 300.0
HB3 CB CA C 68.7 65.0
HB3 CB CA HA 185.3 185.0
CA CB HB3 CG 126.3 120.0
CA CB HB3 HB2 243.2 240.0
CG CB HB3 HB2 116.9 120.0
HB3 CB CG CD 198.0 300.0
HB3 CB CG HG2 323.3 60.0
HB3 CB CG HG3 72.7 180.0
CD CG CB HB2 307.6 60.0
CD CG CB HB3 198.0 300.0
CB CG CD HG2 125.3 120.0
CB CG CD HG3 234.7 240.0
HG2 CG CD HG3 109.4 120.0
NE CD CG HD2 234.7 240.0
NE CD CG HD3 125.2 119.9
CG CD NE CZ 220.5 180.0
CG CD NE HE 95.2 0.1
HD2 CD CG HD3 250.5 239.9
HG2 CG CB HB2 72.8 180.0
HG2 CG CB HB3 323.3 60.0
CB CG HG2 CD 234.7 240.0
CB CG HG2 HG3 117.3 120.1
CD CG HG2 HG3 242.7 240.1
HG2 CG CD NE 156.4 60.0
HG2 CG CD HD2 281.7 180.0
HG2 CG CD HD3 31.2 300.0
HG3 CG CB HB2 182.3 300.0
HG3 CG CB HB3 72.7 180.0
CB CG HG3 CD 125.3 120.0
CB CG HG3 HG2 242.6 239.9
CD CG HG3 HG2 117.3 120.0
HG3 CG CD NE 47.0 300.0
HG3 CG CD HD2 172.3 60.0
HG3 CG CD HD3 281.8 180.1
NE CD CG HG2 156.4 60.0
NE CD CG HG3 47.0 300.0
CG CD NE HD2 125.3 120.0
CG CD NE HD3 234.7 240.1
HD2 CD NE HD3 109.5 120.1
CZ NE CD HE 125.3 179.9
CD NE CZ NH1 0.4 0.0
CD NE CZ NH2 180.8 180.0
HD2 CD CG HG2 281.7 180.0
HD2 CD CG HG3 172.3 60.0
CG CD HD2 NE 232.5 240.0
CG CD HD2 HD3 116.3 120.0
NE CD HD2 HD3 243.8 240.0
HD2 CD NE CZ 95.2 60.0
HD2 CD NE HE 329.9 240.1
HD3 CD CG HG2 31.2 300.0
HD3 CD CG HG3 281.8 180.1
CG CD HD3 NE 127.5 119.9
CG CD HD3 HD2 243.7 240.0
NE CD HD3 HD2 116.3 120.1
HD3 CD NE CZ 345.7 299.9
HD3 CD NE HE 220.4 120.0
CZ NE CD HD2 95.2 60.0
CZ NE CD HD3 345.7 299.9
CD NE CZ HE 234.7 180.1
NH1 CZ NE NH2 179.6 180.0
NE CZ NH1 HH11 180.0 0.0
NE CZ NH1 HH12 54.8 179.9
NE CZ NH2 HH21 359.5 180.0
NE CZ NH2 HH22 180.0 0.0
HE NE CD HD2 329.9 240.1
HE NE CD HD3 220.4 120.0
CD NE HE CZ 134.4 179.9
HE NE CZ NH1 125.7 179.9
HE NE CZ NH2 306.1 359.9
NH1 CZ NE HE 125.7 179.9
NE CZ NH1 NH2 180.4 180.0
NH1 CZ NH2 HH21 179.9 360.0
NH1 CZ NH2 HH22 0.5 180.0
HH11 NH1 CZ HH12 125.2 180.1
NH2 CZ NE HE 306.1 359.9
NE CZ NH2 NH1 179.6 180.0
NH2 CZ NH1 HH11 359.5 180.0
NH2 CZ NH1 HH12 234.4 360.0
HH21 NH2 CZ HH22 179.5 180.0
HH11 NH1 CZ NH2 359.5 180.0
CZ NH1 HH11 HH12 234.8 179.9
HH12 NH1 CZ NH2 234.4 360.0
CZ NH1 HH12 HH11 131.6 180.1
CZ NH2 HH21 HH22 180.5 180.0
CZ NH2 HH22 HH21 179.5 180.0
O C CA HA 264.6 320.0
CA C O OXT 180.4 180.1
O C OXT HXT 0.4  
OXT C CA HA 85.0 140.0
CA C OXT O 179.6 179.9