PDB Chemical Component DAR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DAR
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N |
CA |
1.458 |
1.469 |
N |
H |
1.020 |
1.009 |
N |
H2 |
1.020 |
1.009 |
CA |
CB |
1.532 |
1.531 |
CA |
C |
1.521 |
1.507 |
CA |
HA |
1.115 |
1.090 |
CB |
CG |
1.500 |
1.530 |
CB |
HB2 |
1.114 |
1.090 |
CB |
HB3 |
1.115 |
1.090 |
CG |
CD |
1.524 |
1.531 |
CG |
HG2 |
1.115 |
1.090 |
CG |
HG3 |
1.116 |
1.090 |
CD |
NE |
1.466 |
1.465 |
CD |
HD2 |
1.114 |
1.089 |
CD |
HD3 |
1.116 |
1.090 |
NE |
CZ |
1.330 |
1.368 |
NE |
HE |
1.020 |
0.970 |
CZ |
NH1 |
1.332 |
1.331 |
CZ |
NH2 |
1.324 |
1.332 |
NH1 |
HH11 |
1.021 |
0.969 |
NH1 |
HH12 |
1.020 |
0.971 |
NH2 |
HH21 |
1.020 |
0.970 |
NH2 |
HH22 |
1.021 |
0.970 |
C |
O |
1.232 |
1.342 |
C |
OXT |
1.324 |
1.208 |
OXT |
HXT |
0.949 |
|
Bond Angles for DAR
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
CA |
N |
H |
110.3 |
106.7 |
CA |
N |
H2 |
112.0 |
106.7 |
N |
CA |
CB |
110.2 |
109.5 |
N |
CA |
C |
115.5 |
109.5 |
N |
CA |
HA |
104.5 |
109.5 |
H |
N |
H2 |
111.9 |
106.7 |
CB |
CA |
C |
108.9 |
109.5 |
CB |
CA |
HA |
111.7 |
109.4 |
CA |
CB |
CG |
112.9 |
109.4 |
CA |
CB |
HB2 |
110.9 |
109.5 |
CA |
CB |
HB3 |
110.9 |
109.5 |
C |
CA |
HA |
105.9 |
109.5 |
CA |
C |
O |
121.0 |
120.0 |
CA |
C |
OXT |
117.3 |
120.0 |
CG |
CB |
HB2 |
111.0 |
109.5 |
CG |
CB |
HB3 |
111.0 |
109.5 |
CB |
CG |
CD |
111.5 |
109.4 |
CB |
CG |
HG2 |
111.5 |
109.5 |
CB |
CG |
HG3 |
111.5 |
109.5 |
HB2 |
CB |
HB3 |
99.4 |
109.5 |
CD |
CG |
HG2 |
111.4 |
109.5 |
CD |
CG |
HG3 |
111.5 |
109.4 |
CG |
CD |
NE |
114.4 |
109.4 |
CG |
CD |
HD2 |
110.4 |
109.4 |
CG |
CD |
HD3 |
110.4 |
109.5 |
HG2 |
CG |
HG3 |
98.9 |
109.5 |
NE |
CD |
HD2 |
110.4 |
109.5 |
NE |
CD |
HD3 |
110.4 |
109.4 |
CD |
NE |
CZ |
123.4 |
120.0 |
CD |
NE |
HE |
107.3 |
120.0 |
HD2 |
CD |
HD3 |
99.9 |
109.5 |
CZ |
NE |
HE |
107.3 |
120.0 |
NE |
CZ |
NH1 |
119.8 |
120.0 |
NE |
CZ |
NH2 |
120.6 |
119.9 |
NH1 |
CZ |
NH2 |
119.6 |
120.0 |
CZ |
NH1 |
HH11 |
119.8 |
120.0 |
CZ |
NH1 |
HH12 |
108.5 |
120.0 |
CZ |
NH2 |
HH21 |
119.6 |
120.0 |
CZ |
NH2 |
HH22 |
120.6 |
120.0 |
HH11 |
NH1 |
HH12 |
108.4 |
120.0 |
HH21 |
NH2 |
HH22 |
119.8 |
120.0 |
O |
C |
OXT |
121.7 |
120.0 |
C |
OXT |
HXT |
117.3 |
|
Torsion Angles for DAR
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
H |
N |
CA |
H2 |
125.3 |
246.2 |
CB |
CA |
N |
C |
124.0 |
120.0 |
CB |
CA |
N |
HA |
239.9 |
240.0 |
N |
CA |
CB |
CG |
66.2 |
65.0 |
N |
CA |
CB |
HB2 |
191.5 |
185.0 |
N |
CA |
CB |
HB3 |
301.0 |
305.0 |
C |
CA |
N |
HA |
115.9 |
120.0 |
N |
CA |
C |
O |
149.6 |
199.9 |
N |
CA |
C |
OXT |
329.9 |
20.0 |
CA |
N |
H |
H2 |
234.7 |
113.7 |
H |
N |
CA |
CB |
180.0 |
60.0 |
H |
N |
CA |
C |
56.1 |
300.0 |
H |
N |
CA |
HA |
300.1 |
180.0 |
CA |
N |
H2 |
H |
124.4 |
246.2 |
H2 |
N |
CA |
CB |
54.8 |
173.8 |
H2 |
N |
CA |
C |
290.8 |
53.8 |
H2 |
N |
CA |
HA |
174.9 |
293.7 |
CB |
CA |
N |
H |
180.0 |
60.0 |
CB |
CA |
N |
H2 |
54.8 |
173.8 |
N |
CA |
CB |
C |
232.3 |
240.0 |
N |
CA |
CB |
HA |
115.6 |
120.0 |
C |
CA |
CB |
HA |
243.3 |
240.0 |
CB |
CA |
C |
O |
24.9 |
80.0 |
CB |
CA |
C |
OXT |
205.3 |
260.0 |
CG |
CB |
CA |
HB2 |
234.8 |
240.0 |
CG |
CB |
CA |
HB3 |
125.2 |
120.0 |
CA |
CB |
CG |
CD |
72.8 |
180.0 |
CA |
CB |
CG |
HG2 |
198.1 |
300.0 |
CA |
CB |
CG |
HG3 |
307.5 |
60.0 |
HB2 |
CB |
CA |
HB3 |
250.5 |
240.0 |
C |
CA |
N |
H |
56.1 |
300.0 |
C |
CA |
N |
H2 |
290.8 |
53.8 |
N |
CA |
C |
CB |
124.6 |
120.0 |
N |
CA |
C |
HA |
244.9 |
240.0 |
CB |
CA |
C |
HA |
120.3 |
120.0 |
C |
CA |
CB |
CG |
193.9 |
185.0 |
C |
CA |
CB |
HB2 |
319.2 |
305.0 |
C |
CA |
CB |
HB3 |
68.7 |
65.0 |
O |
C |
CA |
OXT |
179.6 |
179.9 |
CA |
C |
OXT |
HXT |
180.0 |
|
HA |
CA |
N |
H |
300.1 |
180.0 |
HA |
CA |
N |
H2 |
174.9 |
293.7 |
N |
CA |
HA |
CB |
240.9 |
240.0 |
N |
CA |
HA |
C |
122.4 |
120.0 |
CB |
CA |
HA |
C |
241.5 |
240.0 |
HA |
CA |
CB |
CG |
310.6 |
305.0 |
HA |
CA |
CB |
HB2 |
75.8 |
65.0 |
HA |
CA |
CB |
HB3 |
185.3 |
185.0 |
HA |
CA |
C |
O |
264.6 |
320.0 |
HA |
CA |
C |
OXT |
85.0 |
140.0 |
CG |
CB |
CA |
C |
193.9 |
185.0 |
CG |
CB |
CA |
HA |
310.6 |
305.0 |
CA |
CB |
CG |
HB2 |
125.2 |
120.0 |
CA |
CB |
CG |
HB3 |
234.8 |
240.0 |
HB2 |
CB |
CG |
HB3 |
109.5 |
120.0 |
CD |
CG |
CB |
HG2 |
234.7 |
240.0 |
CD |
CG |
CB |
HG3 |
125.3 |
120.0 |
CB |
CG |
CD |
NE |
281.7 |
180.0 |
CB |
CG |
CD |
HD2 |
47.0 |
300.0 |
CB |
CG |
CD |
HD3 |
156.5 |
60.0 |
HG2 |
CG |
CB |
HG3 |
250.6 |
240.0 |
HB2 |
CB |
CA |
C |
319.2 |
305.0 |
HB2 |
CB |
CA |
HA |
75.8 |
65.0 |
CA |
CB |
HB2 |
CG |
233.7 |
240.0 |
CA |
CB |
HB2 |
HB3 |
116.8 |
120.0 |
CG |
CB |
HB2 |
HB3 |
243.1 |
240.0 |
HB2 |
CB |
CG |
CD |
307.6 |
60.0 |
HB2 |
CB |
CG |
HG2 |
72.8 |
180.0 |
HB2 |
CB |
CG |
HG3 |
182.3 |
300.0 |
HB3 |
CB |
CA |
C |
68.7 |
65.0 |
HB3 |
CB |
CA |
HA |
185.3 |
185.0 |
CA |
CB |
HB3 |
CG |
126.3 |
120.0 |
CA |
CB |
HB3 |
HB2 |
243.2 |
240.0 |
CG |
CB |
HB3 |
HB2 |
116.9 |
120.0 |
HB3 |
CB |
CG |
CD |
198.0 |
300.0 |
HB3 |
CB |
CG |
HG2 |
323.3 |
60.0 |
HB3 |
CB |
CG |
HG3 |
72.7 |
180.0 |
CD |
CG |
CB |
HB2 |
307.6 |
60.0 |
CD |
CG |
CB |
HB3 |
198.0 |
300.0 |
CB |
CG |
CD |
HG2 |
125.3 |
120.0 |
CB |
CG |
CD |
HG3 |
234.7 |
240.0 |
HG2 |
CG |
CD |
HG3 |
109.4 |
120.0 |
NE |
CD |
CG |
HD2 |
234.7 |
240.0 |
NE |
CD |
CG |
HD3 |
125.2 |
119.9 |
CG |
CD |
NE |
CZ |
220.5 |
180.0 |
CG |
CD |
NE |
HE |
95.2 |
0.1 |
HD2 |
CD |
CG |
HD3 |
250.5 |
239.9 |
HG2 |
CG |
CB |
HB2 |
72.8 |
180.0 |
HG2 |
CG |
CB |
HB3 |
323.3 |
60.0 |
CB |
CG |
HG2 |
CD |
234.7 |
240.0 |
CB |
CG |
HG2 |
HG3 |
117.3 |
120.1 |
CD |
CG |
HG2 |
HG3 |
242.7 |
240.1 |
HG2 |
CG |
CD |
NE |
156.4 |
60.0 |
HG2 |
CG |
CD |
HD2 |
281.7 |
180.0 |
HG2 |
CG |
CD |
HD3 |
31.2 |
300.0 |
HG3 |
CG |
CB |
HB2 |
182.3 |
300.0 |
HG3 |
CG |
CB |
HB3 |
72.7 |
180.0 |
CB |
CG |
HG3 |
CD |
125.3 |
120.0 |
CB |
CG |
HG3 |
HG2 |
242.6 |
239.9 |
CD |
CG |
HG3 |
HG2 |
117.3 |
120.0 |
HG3 |
CG |
CD |
NE |
47.0 |
300.0 |
HG3 |
CG |
CD |
HD2 |
172.3 |
60.0 |
HG3 |
CG |
CD |
HD3 |
281.8 |
180.1 |
NE |
CD |
CG |
HG2 |
156.4 |
60.0 |
NE |
CD |
CG |
HG3 |
47.0 |
300.0 |
CG |
CD |
NE |
HD2 |
125.3 |
120.0 |
CG |
CD |
NE |
HD3 |
234.7 |
240.1 |
HD2 |
CD |
NE |
HD3 |
109.5 |
120.1 |
CZ |
NE |
CD |
HE |
125.3 |
179.9 |
CD |
NE |
CZ |
NH1 |
0.4 |
0.0 |
CD |
NE |
CZ |
NH2 |
180.8 |
180.0 |
HD2 |
CD |
CG |
HG2 |
281.7 |
180.0 |
HD2 |
CD |
CG |
HG3 |
172.3 |
60.0 |
CG |
CD |
HD2 |
NE |
232.5 |
240.0 |
CG |
CD |
HD2 |
HD3 |
116.3 |
120.0 |
NE |
CD |
HD2 |
HD3 |
243.8 |
240.0 |
HD2 |
CD |
NE |
CZ |
95.2 |
60.0 |
HD2 |
CD |
NE |
HE |
329.9 |
240.1 |
HD3 |
CD |
CG |
HG2 |
31.2 |
300.0 |
HD3 |
CD |
CG |
HG3 |
281.8 |
180.1 |
CG |
CD |
HD3 |
NE |
127.5 |
119.9 |
CG |
CD |
HD3 |
HD2 |
243.7 |
240.0 |
NE |
CD |
HD3 |
HD2 |
116.3 |
120.1 |
HD3 |
CD |
NE |
CZ |
345.7 |
299.9 |
HD3 |
CD |
NE |
HE |
220.4 |
120.0 |
CZ |
NE |
CD |
HD2 |
95.2 |
60.0 |
CZ |
NE |
CD |
HD3 |
345.7 |
299.9 |
CD |
NE |
CZ |
HE |
234.7 |
180.1 |
NH1 |
CZ |
NE |
NH2 |
179.6 |
180.0 |
NE |
CZ |
NH1 |
HH11 |
180.0 |
0.0 |
NE |
CZ |
NH1 |
HH12 |
54.8 |
179.9 |
NE |
CZ |
NH2 |
HH21 |
359.5 |
180.0 |
NE |
CZ |
NH2 |
HH22 |
180.0 |
0.0 |
HE |
NE |
CD |
HD2 |
329.9 |
240.1 |
HE |
NE |
CD |
HD3 |
220.4 |
120.0 |
CD |
NE |
HE |
CZ |
134.4 |
179.9 |
HE |
NE |
CZ |
NH1 |
125.7 |
179.9 |
HE |
NE |
CZ |
NH2 |
306.1 |
359.9 |
NH1 |
CZ |
NE |
HE |
125.7 |
179.9 |
NE |
CZ |
NH1 |
NH2 |
180.4 |
180.0 |
NH1 |
CZ |
NH2 |
HH21 |
179.9 |
360.0 |
NH1 |
CZ |
NH2 |
HH22 |
0.5 |
180.0 |
HH11 |
NH1 |
CZ |
HH12 |
125.2 |
180.1 |
NH2 |
CZ |
NE |
HE |
306.1 |
359.9 |
NE |
CZ |
NH2 |
NH1 |
179.6 |
180.0 |
NH2 |
CZ |
NH1 |
HH11 |
359.5 |
180.0 |
NH2 |
CZ |
NH1 |
HH12 |
234.4 |
360.0 |
HH21 |
NH2 |
CZ |
HH22 |
179.5 |
180.0 |
HH11 |
NH1 |
CZ |
NH2 |
359.5 |
180.0 |
CZ |
NH1 |
HH11 |
HH12 |
234.8 |
179.9 |
HH12 |
NH1 |
CZ |
NH2 |
234.4 |
360.0 |
CZ |
NH1 |
HH12 |
HH11 |
131.6 |
180.1 |
CZ |
NH2 |
HH21 |
HH22 |
180.5 |
180.0 |
CZ |
NH2 |
HH22 |
HH21 |
179.5 |
180.0 |
O |
C |
CA |
HA |
264.6 |
320.0 |
CA |
C |
O |
OXT |
180.4 |
180.1 |
O |
C |
OXT |
HXT |
0.4 |
|
OXT |
C |
CA |
HA |
85.0 |
140.0 |
CA |
C |
OXT |
O |
179.6 |
179.9 |