PDB Chemical Component DAN

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DAN

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.403 1.473
C1 O1A 1.231 1.215
C1 O1B 1.238 1.349
C2 C3 1.403 1.318
C2 O6 1.383 1.345
C3 C4 1.524 1.508
C3 H3 1.104 1.080
C4 C5 1.536 1.535
C4 O4 1.425 1.429
C4 H4 1.116 1.089
C5 C6 1.540 1.533
C5 N5 1.453 1.465
C5 H5 1.114 1.090
C6 C7 1.513 1.530
C6 O6 1.429 1.422
C6 H6 1.115 1.089
C7 C8 1.546 1.530
C7 O7 1.420 1.429
C7 H7 1.114 1.089
C8 C9 1.561 1.529
C8 O8 1.446 1.430
C8 H8 1.115 1.090
C9 O9 1.417 1.429
C9 H91 1.115 1.090
C9 H92 1.115 1.089
C10 C11 1.528 1.507
C10 N5 1.331 1.348
C10 O10 1.242 1.213
C11 H111 1.114 1.090
C11 H112 1.116 1.090
C11 H113 1.116 1.089
N5 HN5 1.021 0.970
O1B HO1B 0.950 0.967
O4 HO4 0.950 0.967
O7 HO7 0.950 0.967
O8 HO8 0.951 0.968
O9 HO9 0.949 0.967

Bond Angles for DAN

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 O1A 124.2 120.0
C2 C1 O1B 118.9 120.0
C1 C2 C3 119.3 116.7
C1 C2 O6 119.1 116.8
O1A C1 O1B 116.8 120.0
C1 O1B HO1B 118.9 120.0
C3 C2 O6 120.3 126.5
C2 C3 C4 120.6 122.3
C2 C3 H3 115.6 118.9
C2 O6 C6 120.7 110.2
C4 C3 H3 123.9 118.8
C3 C4 C5 110.0 108.1
C3 C4 O4 113.4 109.8
C3 C4 H4 105.8 109.7
C5 C4 O4 107.8 109.8
C5 C4 H4 111.7 109.7
C4 C5 C6 107.6 107.5
C4 C5 N5 107.2 109.9
C4 C5 H5 113.8 109.8
O4 C4 H4 108.1 109.8
C4 O4 HO4 113.4 106.8
C6 C5 N5 114.2 109.9
C6 C5 H5 106.8 109.9
C5 C6 C7 112.8 109.6
C5 C6 O6 108.7 109.3
C5 C6 H6 106.8 109.4
N5 C5 H5 107.3 109.8
C5 N5 C10 122.9 120.0
C5 N5 HN5 123.1 120.0
C7 C6 O6 106.3 109.5
C7 C6 H6 109.2 109.4
C6 C7 C8 108.2 109.5
C6 C7 O7 106.6 109.4
C6 C7 H7 113.1 109.5
O6 C6 H6 113.2 109.6
C8 C7 O7 112.5 109.4
C8 C7 H7 107.4 109.6
C7 C8 C9 109.7 109.5
C7 C8 O8 109.1 109.4
C7 C8 H8 110.1 109.5
O7 C7 H7 109.0 109.5
C7 O7 HO7 106.6 106.8
C9 C8 O8 111.0 109.4
C9 C8 H8 108.2 109.5
C8 C9 O9 110.7 109.5
C8 C9 H91 111.8 109.4
C8 C9 H92 111.8 109.6
O8 C8 H8 108.7 109.4
C8 O8 HO8 109.2 106.8
O9 C9 H91 111.8 109.4
O9 C9 H92 111.8 109.5
C9 O9 HO9 110.7 106.9
H91 C9 H92 98.7 109.4
C11 C10 N5 116.6 120.0
C11 C10 O10 121.8 120.0
C10 C11 H111 116.7 109.5
C10 C11 H112 109.6 109.4
C10 C11 H113 109.6 109.5
N5 C10 O10 121.4 120.0
C10 N5 HN5 114.0 120.0
H111 C11 H112 109.6 109.4
H111 C11 H113 109.7 109.5
H112 C11 H113 100.5 109.5

Torsion Angles for DAN

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O1A C1 C2 O1B 177.6 180.0
C2 C1 O1B HO1B 179.9 180.0
C3 C2 C1 O6 193.1 179.9
C1 C2 C3 C4 167.0 179.2
C1 C2 C3 H3 347.1 359.3
C1 C2 O6 C6 204.7 203.8
C2 C1 O1A O1B 182.3 180.0
O1A C1 C2 C3 23.4 359.9
O1A C1 C2 O6 190.4 180.0
O1A C1 O1B HO1B 2.1 360.0
C2 C1 O1B O1A 177.8 180.0
O1B C1 C2 C3 205.8 179.9
O1B C1 C2 O6 12.7 0.0
C3 C2 C1 O1A 23.4 359.9
C3 C2 C1 O1B 205.8 179.9
C1 C2 C3 O6 166.8 180.1
C3 C2 O6 C6 11.4 23.9
C4 C3 C2 H3 179.9 179.9
C2 C3 C4 C5 22.1 12.0
C2 C3 C4 O4 142.9 131.7
C2 C3 C4 H4 261.3 252.4
O6 C2 C1 O1A 190.4 180.0
O6 C2 C1 O1B 12.7 0.0
C1 C2 O6 C3 193.2 179.9
O6 C2 C3 C4 0.3 359.1
O6 C2 C3 H3 180.3 179.2
C5 C6 O6 C2 316.3 303.1
C7 C6 O6 C2 194.6 183.0
C2 O6 C6 H6 74.7 63.0
C4 C3 C2 O6 0.3 359.1
C2 C3 C4 H3 180.1 180.1
C5 C4 C3 O4 239.1 240.3
C5 C4 C3 H4 120.8 119.6
C3 C4 C5 C6 307.6 317.4
C3 C4 C5 N5 184.3 197.8
C3 C4 C5 H5 65.8 76.9
O4 C4 C3 H4 241.7 239.3
C3 C4 O4 HO4 179.9 61.4
H3 C3 C2 O6 180.3 179.2
C2 C3 H3 C4 179.9 179.9
H3 C3 C4 C5 202.0 191.9
H3 C3 C4 O4 322.9 311.6
H3 C3 C4 H4 81.2 72.3
C5 C4 C3 H3 202.0 191.9
C3 C4 C5 O4 124.2 119.7
C3 C4 C5 H4 242.8 240.4
O4 C4 C5 H4 118.6 120.7
C5 C4 O4 HO4 302.0 180.0
C6 C5 C4 N5 123.3 119.6
C6 C5 C4 H5 241.8 240.5
C4 C5 C6 C7 181.2 188.6
C4 C5 C6 O6 63.6 68.6
C4 C5 C6 H6 301.1 308.6
N5 C5 C4 H5 118.5 120.9
C4 C5 N5 C10 217.2 269.1
C4 C5 N5 HN5 37.1 89.0
O4 C4 C3 H3 322.9 311.6
C3 C4 O4 C5 237.9 241.3
C3 C4 O4 H4 117.0 120.7
C5 C4 O4 H4 239.1 239.4
O4 C4 C5 C6 183.5 197.7
O4 C4 C5 N5 60.2 78.1
O4 C4 C5 H5 301.7 317.2
H4 C4 C3 H3 81.2 72.3
C3 C4 H4 C5 119.7 118.6
C3 C4 H4 O4 238.2 239.3
C5 C4 H4 O4 118.5 120.7
H4 C4 C5 C6 64.8 77.0
H4 C4 C5 N5 301.5 317.4
H4 C4 C5 H5 183.0 196.5
H4 C4 O4 HO4 62.9 300.7
C2 O6 C6 C5 316.3 303.1
C6 C5 C4 O4 183.5 197.7
C6 C5 C4 H4 64.8 77.0
C4 C5 C6 N5 241.1 240.4
C4 C5 C6 H5 122.6 119.5
N5 C5 C6 H5 241.5 239.1
C6 C5 N5 C10 98.0 151.0
C6 C5 N5 HN5 278.0 330.9
C7 C6 C5 O6 117.6 120.1
C7 C6 C5 H6 240.0 240.0
C5 C6 C7 C8 183.0 180.2
C5 C6 C7 O7 304.2 300.1
C5 C6 C7 H7 64.0 60.1
O6 C6 C5 H6 122.4 120.0
N5 C5 C4 O4 60.2 78.1
N5 C5 C4 H4 301.5 317.4
C4 C5 N5 C6 119.2 118.1
C4 C5 N5 H5 237.3 239.1
C6 C5 N5 H5 118.2 121.0
N5 C5 C6 C7 300.1 308.2
N5 C5 C6 O6 182.5 188.1
N5 C5 C6 H6 60.0 68.2
C11 C10 N5 C5 172.9 180.0
C5 N5 C10 O10 347.4 359.9
C10 N5 C5 HN5 180.0 180.1
H5 C5 C4 O4 301.7 317.2
H5 C5 C4 H4 183.0 196.5
C4 C5 H5 C6 241.3 241.9
C4 C5 H5 N5 118.5 121.0
C6 C5 H5 N5 237.1 239.0
H5 C5 C6 C7 58.5 69.1
H5 C5 C6 O6 300.9 309.1
H5 C5 C6 H6 178.5 189.1
H5 C5 N5 C10 339.8 30.0
H5 C5 N5 HN5 159.8 210.0
C2 O6 C6 C7 194.6 183.0
C7 C6 C5 N5 300.1 308.2
C7 C6 C5 H5 58.5 69.1
C5 C6 C7 O6 241.0 240.1
C5 C6 C7 H6 118.6 120.0
O6 C6 C7 H6 237.5 239.9
C8 C7 C6 O7 238.8 240.1
C8 C7 C6 H7 118.9 120.1
C6 C7 C8 C9 178.6 180.0
C6 C7 C8 O8 300.4 299.9
C6 C7 C8 H8 59.7 59.9
O7 C7 C6 H7 240.2 240.0
C6 C7 O7 HO7 180.0 300.0
O6 C6 C5 N5 182.5 188.1
O6 C6 C5 H5 300.9 309.1
C5 C6 O6 C7 121.6 120.1
C5 C6 O6 H6 241.5 240.2
C7 C6 O6 H6 119.9 120.0
O6 C6 C7 C8 302.0 300.1
O6 C6 C7 O7 63.2 60.0
O6 C6 C7 H7 183.0 180.0
H6 C6 C5 N5 60.0 68.2
H6 C6 C5 H5 178.5 189.1
C5 C6 H6 C7 237.8 239.9
C5 C6 H6 O6 119.5 119.8
C7 C6 H6 O6 241.8 239.9
H6 C6 C7 C8 64.4 60.2
H6 C6 C7 O7 185.7 180.1
H6 C6 C7 H7 305.5 300.1
C8 C7 C6 O6 302.0 300.1
C8 C7 C6 H6 64.4 60.2
C6 C7 C8 O7 117.5 119.9
C6 C7 C8 H7 237.5 239.9
O7 C7 C8 H7 120.0 120.0
C8 C7 O7 HO7 298.5 59.9
C9 C8 C7 O8 238.2 240.1
C9 C8 C7 H8 118.9 120.1
C7 C8 C9 O9 63.3 180.0
C7 C8 C9 H91 188.6 299.9
C7 C8 C9 H92 298.1 59.9
O8 C8 C7 H8 240.8 240.1
C7 C8 O8 HO8 180.0 300.0
O7 C7 C6 O6 63.2 60.0
O7 C7 C6 H6 185.7 180.1
C6 C7 O7 C8 241.5 240.1
C6 C7 O7 H7 122.5 120.0
C8 C7 O7 H7 240.9 239.9
O7 C7 C8 C9 61.1 60.1
O7 C7 C8 O8 182.9 180.0
O7 C7 C8 H8 302.1 300.0
H7 C7 C6 O6 183.0 180.0
H7 C7 C6 H6 305.5 300.1
C6 C7 H7 C8 119.4 120.1
C6 C7 H7 O7 241.5 240.0
C8 C7 H7 O7 122.2 120.0
H7 C7 C8 C9 301.1 300.1
H7 C7 C8 O8 62.9 60.0
H7 C7 C8 H8 182.1 180.0
H7 C7 O7 HO7 57.5 180.0
C9 C8 C7 O7 61.1 60.1
C9 C8 C7 H7 301.1 300.1
C7 C8 C9 O8 120.7 119.9
C7 C8 C9 H8 239.9 239.9
O8 C8 C9 H8 119.2 119.9
C9 C8 O8 HO8 301.0 60.0
O9 C9 C8 H91 234.7 240.1
O9 C9 C8 H92 125.3 120.1
C8 C9 O9 HO9 180.0 180.0
H91 C9 C8 H92 250.5 240.0
O8 C8 C7 O7 182.9 180.0
O8 C8 C7 H7 62.9 60.0
C7 C8 O8 C9 239.0 240.0
C7 C8 O8 H8 120.1 120.0
C9 C8 O8 H8 241.1 240.0
O8 C8 C9 O9 302.7 60.1
O8 C8 C9 H91 67.9 180.0
O8 C8 C9 H92 177.4 300.0
H8 C8 C7 O7 302.1 300.0
H8 C8 C7 H7 182.1 180.0
C7 C8 H8 C9 119.8 120.1
C7 C8 H8 O8 240.5 240.1
C9 C8 H8 O8 120.7 120.0
H8 C8 C9 O9 183.4 300.1
H8 C8 C9 H91 308.7 60.1
H8 C8 C9 H92 58.2 180.0
H8 C8 O8 HO8 59.9 180.0
O9 C9 C8 O8 302.7 60.1
O9 C9 C8 H8 183.4 300.1
C8 C9 O9 H91 125.2 120.0
C8 C9 O9 H92 234.7 239.8
H91 C9 O9 H92 109.5 119.9
H91 C9 C8 O8 67.9 180.0
H91 C9 C8 H8 308.7 60.1
C8 C9 H91 O9 235.3 240.0
C8 C9 H91 H92 117.7 120.1
O9 C9 H91 H92 242.3 240.1
H91 C9 O9 HO9 54.7 60.1
H92 C9 C8 O8 177.4 300.0
H92 C9 C8 H8 58.2 180.0
C8 C9 H92 O9 124.7 120.1
C8 C9 H92 H91 242.3 240.0
O9 C9 H92 H91 117.7 119.9
H92 C9 O9 HO9 305.2 300.2
C5 N5 C10 C11 172.9 180.0
N5 C10 C11 O10 174.5 179.9
C11 C10 N5 HN5 352.9 0.1
H111 C11 C10 H112 234.7 240.1
H111 C11 C10 H113 125.3 120.0
H112 C11 C10 H113 250.6 240.0
C10 N5 C5 H5 339.8 30.0
C5 N5 C10 HN5 180.0 179.9
C11 C10 N5 O10 185.5 180.1
N5 C10 C11 H111 180.0 180.0
N5 C10 C11 H112 305.3 299.9
N5 C10 C11 H113 54.7 59.9
C11 C10 O10 N5 174.2 179.9
O10 C10 C11 H111 5.5 0.1
O10 C10 C11 H112 130.8 120.0
O10 C10 C11 H113 240.2 240.0
O10 C10 N5 HN5 167.4 180.0
H111 C11 C10 N5 180.0 180.0
H111 C11 C10 O10 5.5 0.1
C10 C11 H111 H112 125.3 119.9
C10 C11 H111 H113 234.7 240.0
H112 C11 H111 H113 109.4 120.1
H112 C11 C10 N5 305.3 299.9
H112 C11 C10 O10 130.8 120.0
C10 C11 H112 H111 230.8 240.0
C10 C11 H112 H113 115.3 120.0
H111 C11 H112 H113 244.6 240.0
H113 C11 C10 N5 54.7 59.9
H113 C11 C10 O10 240.2 240.0
C10 C11 H113 H111 129.3 120.1
C10 C11 H113 H112 244.7 240.0
H111 C11 H113 H112 115.4 120.0
HN5 N5 C5 H5 159.8 210.0
C5 N5 HN5 C10 180.0 180.1
HN5 N5 C10 O10 167.4 180.0
HO4 O4 C4 H4 62.9 300.7
HO7 O7 C7 H7 57.5 180.0
HO8 O8 C8 H8 59.9 180.0
HO9 O9 C9 H91 54.7 60.1
HO9 O9 C9 H92 305.2 300.2