PDB Chemical Component DAF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DAF
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O5 |
C1 |
1.452 |
1.433 |
| C2 |
C1 |
1.520 |
1.531 |
| C1 |
O1 |
1.434 |
1.429 |
| C1 |
H1 |
1.100 |
1.090 |
| O1 |
HO1 |
0.950 |
0.968 |
| C3 |
C2 |
1.539 |
1.532 |
| C2 |
O2 |
1.425 |
1.430 |
| C2 |
H2 |
1.100 |
1.091 |
| O2 |
HO2 |
0.950 |
0.967 |
| C4 |
C3 |
1.549 |
1.534 |
| O3 |
C3 |
1.429 |
1.429 |
| C3 |
H3 |
1.100 |
1.090 |
| O3 |
HO3 |
0.950 |
0.966 |
| N4 |
C4 |
1.445 |
1.469 |
| C4 |
C5 |
1.575 |
1.513 |
| C4 |
H4 |
1.100 |
1.090 |
| C1H |
N4 |
1.454 |
1.469 |
| N4 |
HN4 |
1.000 |
1.009 |
| C6 |
C5 |
1.518 |
1.318 |
| C5 |
O5 |
1.442 |
1.364 |
| C6 |
H6 |
1.080 |
1.080 |
| C6 |
H6A |
1.080 |
1.080 |
| C2H |
C1H |
1.516 |
1.527 |
| C1H |
C6H |
1.467 |
1.499 |
| C1H |
H1H |
1.100 |
1.090 |
| O2H |
C2H |
1.429 |
1.429 |
| C2H |
C3H |
1.533 |
1.535 |
| C2H |
H2H |
1.100 |
1.090 |
| O2H |
HO2H |
0.951 |
0.967 |
| O3H |
C3H |
1.427 |
1.429 |
| C3H |
C4H |
1.570 |
1.515 |
| C3H |
H3H |
1.100 |
1.090 |
| O3H |
HO3H |
0.950 |
0.967 |
| O4H |
C4H |
1.426 |
1.213 |
| C4H |
C5H |
1.537 |
1.475 |
| C5H |
C6H |
1.393 |
1.348 |
| C5H |
C7H |
1.545 |
1.471 |
| C6H |
H6H |
1.080 |
1.080 |
| O7H |
C7H |
1.429 |
1.212 |
| C7H |
H7H |
1.079 |
1.080 |
Bond Angles for DAF
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O5 |
C1 |
H1 |
106.4 |
109.5 |
| C2 |
C1 |
H1 |
105.6 |
109.5 |
| O1 |
C1 |
H1 |
106.6 |
109.5 |
| C1 |
O1 |
HO1 |
109.5 |
114.0 |
| C3 |
C2 |
H2 |
107.8 |
109.5 |
| O2 |
C2 |
H2 |
109.3 |
109.5 |
| C2 |
O2 |
HO2 |
109.5 |
114.0 |
| C4 |
C3 |
H3 |
108.9 |
109.6 |
| O3 |
C3 |
H3 |
110.5 |
109.6 |
| N4 |
C4 |
C5 |
112.0 |
109.7 |
| N4 |
C4 |
H4 |
109.3 |
109.8 |
| C5 |
C4 |
H4 |
107.7 |
109.7 |
| C4 |
C5 |
O5 |
116.7 |
118.1 |
| C1H |
N4 |
HN4 |
107.1 |
111.0 |
| H6 |
C6 |
H6A |
120.0 |
120.1 |
| C2H |
C1H |
C6H |
111.1 |
111.2 |
| C2H |
C1H |
H1H |
99.2 |
109.1 |
| C6H |
C1H |
H1H |
99.5 |
109.2 |
| C1H |
C6H |
C5H |
120.2 |
122.9 |
| C1H |
C6H |
H6H |
119.9 |
118.6 |
| O2H |
C2H |
C3H |
113.8 |
109.5 |
| O2H |
C2H |
H2H |
108.6 |
109.5 |
| C3H |
C2H |
H2H |
107.3 |
109.5 |
| C2H |
C3H |
C4H |
110.5 |
107.3 |
| C2H |
C3H |
H3H |
107.9 |
109.9 |
| O3H |
C3H |
C4H |
110.3 |
109.8 |
| O3H |
C3H |
H3H |
109.3 |
109.9 |
| C4H |
C3H |
H3H |
107.5 |
109.9 |
| C3H |
C4H |
C5H |
118.0 |
117.7 |
| O4H |
C4H |
C5H |
122.1 |
121.2 |
| C4H |
C5H |
C6H |
116.9 |
120.3 |
| C4H |
C5H |
C7H |
121.3 |
119.8 |
| C6H |
C5H |
C7H |
121.8 |
119.9 |
| C5H |
C6H |
H6H |
119.9 |
118.5 |
| C5H |
C7H |
H7H |
121.9 |
119.9 |
| O7H |
C7H |
H7H |
121.9 |
120.1 |
Torsion Angles for DAF
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
O5 |
H1 |
116.3 |
120.0 |
| O1 |
C1 |
O5 |
H1 |
244.9 |
239.9 |
| O5 |
C1 |
O1 |
HO1 |
180.0 |
60.1 |
| O5 |
C1 |
C2 |
H1 |
243.3 |
240.0 |
| O1 |
C1 |
C2 |
H1 |
116.0 |
120.1 |
| C2 |
C1 |
O1 |
HO1 |
309.5 |
179.9 |
| O5 |
C1 |
O1 |
H1 |
115.0 |
120.1 |
| C2 |
C1 |
O1 |
H1 |
244.5 |
239.9 |
| H1 |
C1 |
O1 |
HO1 |
65.0 |
300.1 |
| HO1 |
O1 |
C1 |
H1 |
65.0 |
300.1 |
| C3 |
C2 |
C1 |
H1 |
168.6 |
61.3 |
| O2 |
C2 |
C3 |
H2 |
118.6 |
120.0 |
| C3 |
C2 |
O2 |
HO2 |
302.1 |
179.9 |
| O2 |
C2 |
C1 |
H1 |
290.3 |
181.3 |
| C3 |
C2 |
O2 |
H2 |
242.3 |
240.0 |
| H2 |
C2 |
C1 |
H1 |
51.3 |
301.3 |
| H2 |
C2 |
O2 |
HO2 |
59.8 |
300.0 |
| HO2 |
O2 |
C2 |
H2 |
59.8 |
300.0 |
| C4 |
C3 |
C2 |
H2 |
52.9 |
179.9 |
| O3 |
C3 |
C4 |
H3 |
237.0 |
239.7 |
| O3 |
C3 |
C2 |
H2 |
290.9 |
60.0 |
| C4 |
C3 |
O3 |
H3 |
122.1 |
120.3 |
| H3 |
C3 |
C2 |
H2 |
170.8 |
299.7 |
| HO3 |
O3 |
C3 |
H3 |
299.1 |
60.2 |
| N4 |
C4 |
C3 |
H3 |
64.9 |
307.7 |
| C5 |
C4 |
N4 |
H4 |
240.8 |
239.4 |
| N4 |
C4 |
C5 |
O5 |
193.0 |
289.0 |
| C5 |
C4 |
C3 |
H3 |
301.3 |
188.0 |
| N4 |
C4 |
C5 |
H4 |
120.2 |
120.6 |
| H4 |
C4 |
C3 |
H3 |
184.8 |
68.3 |
| N4 |
C4 |
H4 |
C5 |
238.1 |
239.4 |
| H4 |
C4 |
C5 |
O5 |
72.8 |
168.4 |
| C1H |
N4 |
C4 |
H4 |
357.6 |
34.4 |
| HN4 |
N4 |
C4 |
C5 |
359.7 |
37.8 |
| HN4 |
N4 |
C4 |
H4 |
119.0 |
158.3 |
| C6 |
C5 |
C4 |
H4 |
274.9 |
348.3 |
| C5 |
O5 |
C1 |
H1 |
207.8 |
293.6 |
| O5 |
C5 |
C4 |
H4 |
72.8 |
168.4 |
| C2H |
C1H |
N4 |
HN4 |
23.0 |
82.8 |
| C6H |
C1H |
C2H |
H1H |
256.0 |
239.5 |
| C2H |
C1H |
C6H |
C5H |
318.7 |
22.2 |
| C2H |
C1H |
C6H |
H6H |
138.7 |
202.3 |
| C6H |
C1H |
N4 |
HN4 |
236.9 |
321.0 |
| C2H |
C1H |
C6H |
H1H |
103.8 |
120.4 |
| C4H |
C5H |
C6H |
C1H |
358.9 |
359.4 |
| C1H |
C6H |
C5H |
C7H |
179.4 |
179.3 |
| C5H |
C6H |
C1H |
H6H |
180.0 |
179.9 |
| H1H |
C1H |
N4 |
HN4 |
128.9 |
201.9 |
| C2H |
C1H |
H1H |
C6H |
246.6 |
238.3 |
| H1H |
C1H |
C6H |
C5H |
214.9 |
261.8 |
| H1H |
C1H |
C6H |
H6H |
34.9 |
81.9 |
| O2H |
C2H |
C1H |
C6H |
195.9 |
66.6 |
| O2H |
C2H |
C1H |
H1H |
299.9 |
187.1 |
| C3H |
C2H |
O2H |
H2H |
240.6 |
239.9 |
| O2H |
C2H |
C3H |
C4H |
175.2 |
302.7 |
| O2H |
C2H |
C3H |
H3H |
292.4 |
62.2 |
| C3H |
C2H |
C1H |
C6H |
70.7 |
306.7 |
| C3H |
C2H |
C1H |
H1H |
174.7 |
67.1 |
| O2H |
C2H |
C3H |
H2H |
120.1 |
120.1 |
| O3H |
C3H |
C2H |
C4H |
237.1 |
240.6 |
| O3H |
C3H |
C2H |
H3H |
119.9 |
121.1 |
| C4H |
C3H |
C2H |
H3H |
242.8 |
240.5 |
| C2H |
C3H |
C4H |
C5H |
20.9 |
317.9 |
| H2H |
C2H |
C1H |
C6H |
317.4 |
186.8 |
| H2H |
C2H |
C1H |
H1H |
61.4 |
307.2 |
| O2H |
C2H |
H2H |
C3H |
236.6 |
239.9 |
| H2H |
C2H |
C3H |
C4H |
55.1 |
182.5 |
| H2H |
C2H |
C3H |
H3H |
172.2 |
302.1 |
| HO2H |
O2H |
C2H |
C3H |
299.7 |
299.8 |
| HO2H |
O2H |
C2H |
H2H |
59.1 |
59.9 |
| O3H |
C3H |
C2H |
H2H |
292.1 |
63.1 |
| C2H |
C3H |
O3H |
C4H |
123.0 |
117.9 |
| C2H |
C3H |
O3H |
H3H |
240.9 |
238.9 |
| C4H |
C3H |
O3H |
H3H |
117.9 |
121.0 |
| O3H |
C3H |
C4H |
C5H |
144.4 |
77.3 |
| C4H |
C3H |
C2H |
H2H |
55.1 |
182.5 |
| C2H |
C3H |
C4H |
H3H |
117.4 |
119.5 |
| O3H |
C3H |
C4H |
H3H |
241.0 |
239.0 |
| O4H |
C4H |
C3H |
C5H |
177.5 |
180.0 |
| C3H |
C4H |
C5H |
C6H |
11.0 |
11.5 |
| C3H |
C4H |
C5H |
C7H |
190.5 |
191.6 |
| H3H |
C3H |
C2H |
H2H |
172.2 |
302.1 |
| C2H |
C3H |
H3H |
C4H |
240.9 |
242.1 |
| O3H |
C3H |
H3H |
C4H |
119.7 |
121.0 |
| H3H |
C3H |
C4H |
C5H |
263.4 |
198.4 |
| HO3H |
O3H |
C3H |
C4H |
17.1 |
62.1 |
| HO3H |
O3H |
C3H |
H3H |
259.2 |
301.1 |
| O4H |
C4H |
C3H |
H3H |
80.9 |
18.3 |
| C3H |
C4H |
O4H |
C5H |
182.6 |
180.0 |
| O4H |
C4H |
C5H |
C6H |
193.5 |
191.5 |
| O4H |
C4H |
C5H |
C7H |
13.1 |
11.6 |
| C1H |
C6H |
C5H |
C4H |
358.9 |
359.4 |
| C5H |
C4H |
C3H |
H3H |
263.4 |
198.4 |
| C6H |
C5H |
C4H |
C7H |
180.5 |
179.9 |
| C4H |
C5H |
C6H |
H6H |
178.9 |
179.4 |
| C4H |
C5H |
C7H |
H7H |
295.5 |
180.0 |
| C5H |
C6H |
C1H |
H1H |
214.9 |
261.8 |
| C1H |
C6H |
C5H |
H6H |
180.0 |
180.1 |
| C4H |
C5H |
C6H |
C7H |
179.5 |
180.1 |
| C6H |
C5H |
C7H |
H7H |
115.0 |
0.0 |
| C4H |
C5H |
C7H |
C6H |
180.5 |
179.9 |
| C7H |
C5H |
C6H |
H6H |
359.4 |
359.3 |
| O7H |
C7H |
C5H |
H7H |
180.0 |
180.0 |
| H6H |
C6H |
C1H |
H1H |
34.9 |
81.9 |
| C1H |
C6H |
H6H |
C5H |
180.0 |
179.9 |
| H6H |
C6H |
C5H |
C7H |
359.4 |
359.3 |
| C5H |
C7H |
O7H |
H7H |
180.0 |
180.0 |