PDB Chemical Component DAE
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DAE
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
BE |
F1 |
1.530 |
|
BE |
F2 |
1.510 |
|
BE |
F3 |
1.520 |
|
BE |
OB3 |
1.607 |
|
PB |
OB1 |
1.490 |
|
PB |
OB2 |
1.517 |
|
PB |
OB3 |
1.606 |
|
PB |
OA3 |
1.589 |
|
OB2 |
HOB2 |
0.949 |
|
OA3 |
PA |
1.600 |
|
PA |
OA1 |
1.533 |
|
PA |
OA2 |
1.486 |
|
PA |
OE2 |
1.617 |
|
OA1 |
HOA2 |
0.950 |
|
OE2 |
CA1 |
1.434 |
|
NA3 |
CA2 |
1.470 |
|
NA3 |
C1 |
1.447 |
|
NA3 |
HNA1 |
1.021 |
|
CA2 |
CA1 |
1.518 |
|
CA2 |
HA21 |
1.115 |
|
CA2 |
HA22 |
1.114 |
|
CA1 |
HA11 |
1.115 |
|
CA1 |
HA12 |
1.115 |
|
C1 |
C6 |
1.400 |
|
C1 |
C2 |
1.408 |
|
C6 |
C5 |
1.396 |
|
C6 |
H6 |
1.103 |
|
C5 |
C4 |
1.401 |
|
C5 |
H5 |
1.102 |
|
C4 |
C3 |
1.392 |
|
C4 |
N4 |
1.492 |
|
C3 |
C2 |
1.395 |
|
C3 |
H3 |
1.103 |
|
C2 |
N2 |
1.499 |
|
N4 |
O4A |
1.224 |
|
N4 |
O4B |
1.238 |
|
N2 |
O2A |
1.250 |
|
N2 |
O2B |
1.249 |
|
Bond Angles for DAE
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
F1 |
BE |
F2 |
111.2 |
|
F1 |
BE |
F3 |
112.6 |
|
F1 |
BE |
OB3 |
108.1 |
|
F2 |
BE |
F3 |
109.1 |
|
F2 |
BE |
OB3 |
108.6 |
|
F3 |
BE |
OB3 |
107.1 |
|
BE |
OB3 |
PB |
130.7 |
|
OB1 |
PB |
OB2 |
113.4 |
|
OB1 |
PB |
OB3 |
113.8 |
|
OB1 |
PB |
OA3 |
107.8 |
|
OB2 |
PB |
OB3 |
103.9 |
|
OB2 |
PB |
OA3 |
111.5 |
|
PB |
OB2 |
HOB2 |
113.4 |
|
OB3 |
PB |
OA3 |
106.1 |
|
PB |
OA3 |
PA |
132.2 |
|
OA3 |
PA |
OA1 |
109.7 |
|
OA3 |
PA |
OA2 |
111.4 |
|
OA3 |
PA |
OE2 |
103.0 |
|
OA1 |
PA |
OA2 |
107.6 |
|
OA1 |
PA |
OE2 |
113.8 |
|
PA |
OA1 |
HOA2 |
109.7 |
|
OA2 |
PA |
OE2 |
111.5 |
|
PA |
OE2 |
CA1 |
118.0 |
|
OE2 |
CA1 |
CA2 |
111.5 |
|
OE2 |
CA1 |
HA11 |
111.4 |
|
OE2 |
CA1 |
HA12 |
111.4 |
|
CA2 |
NA3 |
C1 |
113.9 |
|
CA2 |
NA3 |
HNA1 |
110.6 |
|
NA3 |
CA2 |
CA1 |
113.8 |
|
NA3 |
CA2 |
HA21 |
110.6 |
|
NA3 |
CA2 |
HA22 |
110.6 |
|
C1 |
NA3 |
HNA1 |
110.6 |
|
NA3 |
C1 |
C6 |
120.3 |
|
NA3 |
C1 |
C2 |
120.4 |
|
CA1 |
CA2 |
HA21 |
110.6 |
|
CA1 |
CA2 |
HA22 |
110.6 |
|
CA2 |
CA1 |
HA11 |
111.4 |
|
CA2 |
CA1 |
HA12 |
111.5 |
|
HA21 |
CA2 |
HA22 |
99.7 |
|
HA11 |
CA1 |
HA12 |
99.0 |
|
C6 |
C1 |
C2 |
119.3 |
|
C1 |
C6 |
C5 |
120.6 |
|
C1 |
C6 |
H6 |
119.8 |
|
C1 |
C2 |
C3 |
119.8 |
|
C1 |
C2 |
N2 |
120.8 |
|
C5 |
C6 |
H6 |
119.6 |
|
C6 |
C5 |
C4 |
119.8 |
|
C6 |
C5 |
H5 |
119.9 |
|
C4 |
C5 |
H5 |
120.3 |
|
C5 |
C4 |
C3 |
119.8 |
|
C5 |
C4 |
N4 |
121.3 |
|
C3 |
C4 |
N4 |
118.9 |
|
C4 |
C3 |
C2 |
120.7 |
|
C4 |
C3 |
H3 |
119.6 |
|
C4 |
N4 |
O4A |
120.3 |
|
C4 |
N4 |
O4B |
122.2 |
|
C2 |
C3 |
H3 |
119.7 |
|
C3 |
C2 |
N2 |
119.4 |
|
C2 |
N2 |
O2A |
120.3 |
|
C2 |
N2 |
O2B |
120.0 |
|
O4A |
N4 |
O4B |
117.5 |
|
O2A |
N2 |
O2B |
119.7 |
|
Torsion Angles for DAE
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
F2 |
BE |
F1 |
F3 |
237.2 |
|
F2 |
BE |
F1 |
OB3 |
119.1 |
|
F3 |
BE |
F1 |
OB3 |
241.9 |
|
F1 |
BE |
OB3 |
PB |
77.7 |
|
F1 |
BE |
F2 |
F3 |
124.8 |
|
F1 |
BE |
F2 |
OB3 |
241.2 |
|
F3 |
BE |
F2 |
OB3 |
116.4 |
|
F2 |
BE |
OB3 |
PB |
317.0 |
|
F1 |
BE |
F3 |
F2 |
236.1 |
|
F1 |
BE |
F3 |
OB3 |
118.6 |
|
F2 |
BE |
F3 |
OB3 |
242.6 |
|
F3 |
BE |
OB3 |
PB |
199.2 |
|
F1 |
BE |
OB3 |
F2 |
120.7 |
|
F1 |
BE |
OB3 |
F3 |
238.4 |
|
F2 |
BE |
OB3 |
F3 |
117.7 |
|
OB1 |
PB |
OB3 |
BE |
266.0 |
|
OB2 |
PB |
OB3 |
BE |
29.9 |
|
BE |
OB3 |
PB |
OA3 |
147.6 |
|
BE |
OB3 |
PB |
OB1 |
266.0 |
|
OB2 |
PB |
OB1 |
OB3 |
241.4 |
|
OB2 |
PB |
OB1 |
OA3 |
124.0 |
|
OB1 |
PB |
OB2 |
HOB2 |
180.0 |
|
OB3 |
PB |
OB1 |
OA3 |
242.6 |
|
OB1 |
PB |
OA3 |
PA |
129.1 |
|
BE |
OB3 |
PB |
OB2 |
29.9 |
|
OB1 |
PB |
OB2 |
OB3 |
124.1 |
|
OB1 |
PB |
OB2 |
OA3 |
238.0 |
|
OB3 |
PB |
OB2 |
OA3 |
113.9 |
|
OB2 |
PB |
OA3 |
PA |
4.0 |
|
OB1 |
PB |
OB3 |
OB2 |
236.1 |
|
OB1 |
PB |
OB3 |
OA3 |
118.4 |
|
OB2 |
PB |
OB3 |
OA3 |
242.3 |
|
OB3 |
PB |
OB2 |
HOB2 |
55.9 |
|
OB3 |
PB |
OA3 |
PA |
251.4 |
|
OB1 |
PB |
OA3 |
OB2 |
125.1 |
|
OB1 |
PB |
OA3 |
OB3 |
237.7 |
|
OB2 |
PB |
OA3 |
OB3 |
112.6 |
|
OA3 |
PB |
OB2 |
HOB2 |
302.0 |
|
PB |
OA3 |
PA |
OA1 |
299.6 |
|
PB |
OA3 |
PA |
OA2 |
58.6 |
|
PB |
OA3 |
PA |
OE2 |
178.1 |
|
HOB2 |
OB2 |
PB |
OB3 |
55.9 |
|
HOB2 |
OB2 |
PB |
OA3 |
302.0 |
|
OA1 |
PA |
OA3 |
OA2 |
241.0 |
|
OA1 |
PA |
OA3 |
OE2 |
121.4 |
|
OA3 |
PA |
OA1 |
HOA2 |
180.0 |
|
OA2 |
PA |
OA3 |
OE2 |
240.4 |
|
OA3 |
PA |
OE2 |
CA1 |
215.8 |
|
OA3 |
PA |
OA1 |
OA2 |
121.3 |
|
OA3 |
PA |
OA1 |
OE2 |
245.3 |
|
OA2 |
PA |
OA1 |
OE2 |
124.0 |
|
OA1 |
PA |
OE2 |
CA1 |
97.2 |
|
OA3 |
PA |
OA2 |
OA1 |
239.8 |
|
OA3 |
PA |
OA2 |
OE2 |
114.4 |
|
OA1 |
PA |
OA2 |
OE2 |
234.6 |
|
OA2 |
PA |
OA1 |
HOA2 |
58.7 |
|
OA2 |
PA |
OE2 |
CA1 |
335.3 |
|
OA3 |
PA |
OE2 |
OA1 |
118.6 |
|
OA3 |
PA |
OE2 |
OA2 |
240.5 |
|
OA1 |
PA |
OE2 |
OA2 |
121.9 |
|
OE2 |
PA |
OA1 |
HOA2 |
294.7 |
|
PA |
OE2 |
CA1 |
CA2 |
162.9 |
|
PA |
OE2 |
CA1 |
HA11 |
288.1 |
|
PA |
OE2 |
CA1 |
HA12 |
37.6 |
|
HOA2 |
OA1 |
PA |
OA2 |
58.7 |
|
HOA2 |
OA1 |
PA |
OE2 |
294.7 |
|
NA3 |
CA2 |
CA1 |
OE2 |
79.6 |
|
OE2 |
CA1 |
CA2 |
HA21 |
314.3 |
|
OE2 |
CA1 |
CA2 |
HA22 |
204.8 |
|
CA2 |
CA1 |
OE2 |
HA11 |
234.8 |
|
CA2 |
CA1 |
OE2 |
HA12 |
125.3 |
|
HA11 |
CA1 |
OE2 |
HA12 |
250.5 |
|
OE2 |
CA1 |
CA2 |
NA3 |
79.6 |
|
C1 |
NA3 |
CA2 |
HNA1 |
125.3 |
|
CA2 |
NA3 |
C1 |
C6 |
5.4 |
|
CA2 |
NA3 |
C1 |
C2 |
185.1 |
|
CA1 |
CA2 |
NA3 |
HA21 |
234.7 |
|
CA1 |
CA2 |
NA3 |
HA22 |
125.2 |
|
NA3 |
CA2 |
CA1 |
HA11 |
314.4 |
|
NA3 |
CA2 |
CA1 |
HA12 |
204.8 |
|
HA21 |
CA2 |
NA3 |
HA22 |
250.5 |
|
CA2 |
NA3 |
C1 |
HNA1 |
234.7 |
|
C1 |
NA3 |
CA2 |
CA1 |
134.2 |
|
C1 |
NA3 |
CA2 |
HA21 |
259.5 |
|
C1 |
NA3 |
CA2 |
HA22 |
9.0 |
|
C6 |
C1 |
NA3 |
C2 |
180.3 |
|
NA3 |
C1 |
C6 |
C5 |
180.6 |
|
NA3 |
C1 |
C6 |
H6 |
0.6 |
|
NA3 |
C1 |
C2 |
C3 |
180.1 |
|
NA3 |
C1 |
C2 |
N2 |
359.9 |
|
CA2 |
NA3 |
HNA1 |
C1 |
127.1 |
|
HNA1 |
NA3 |
CA2 |
CA1 |
8.9 |
|
HNA1 |
NA3 |
CA2 |
HA21 |
134.2 |
|
HNA1 |
NA3 |
CA2 |
HA22 |
243.7 |
|
HNA1 |
NA3 |
C1 |
C6 |
130.7 |
|
HNA1 |
NA3 |
C1 |
C2 |
310.4 |
|
OE2 |
CA1 |
CA2 |
HA11 |
125.2 |
|
OE2 |
CA1 |
CA2 |
HA12 |
234.8 |
|
CA1 |
CA2 |
NA3 |
C1 |
134.2 |
|
CA1 |
CA2 |
NA3 |
HNA1 |
8.9 |
|
NA3 |
CA2 |
CA1 |
HA21 |
125.3 |
|
NA3 |
CA2 |
CA1 |
HA22 |
234.8 |
|
HA21 |
CA2 |
CA1 |
HA22 |
109.5 |
|
HA11 |
CA1 |
CA2 |
HA12 |
109.6 |
|
HA21 |
CA2 |
NA3 |
C1 |
259.5 |
|
HA21 |
CA2 |
NA3 |
HNA1 |
134.2 |
|
NA3 |
CA2 |
HA21 |
CA1 |
233.0 |
|
NA3 |
CA2 |
HA21 |
HA22 |
116.5 |
|
CA1 |
CA2 |
HA21 |
HA22 |
243.5 |
|
HA21 |
CA2 |
CA1 |
HA11 |
189.1 |
|
HA21 |
CA2 |
CA1 |
HA12 |
79.6 |
|
HA22 |
CA2 |
NA3 |
C1 |
9.0 |
|
HA22 |
CA2 |
NA3 |
HNA1 |
243.7 |
|
NA3 |
CA2 |
HA22 |
CA1 |
127.0 |
|
NA3 |
CA2 |
HA22 |
HA21 |
243.5 |
|
CA1 |
CA2 |
HA22 |
HA21 |
116.5 |
|
HA22 |
CA2 |
CA1 |
HA11 |
79.6 |
|
HA22 |
CA2 |
CA1 |
HA12 |
330.1 |
|
OE2 |
CA1 |
HA11 |
CA2 |
234.7 |
|
OE2 |
CA1 |
HA11 |
HA12 |
117.3 |
|
HA11 |
CA1 |
CA2 |
HA21 |
189.1 |
|
HA11 |
CA1 |
CA2 |
HA22 |
79.6 |
|
CA2 |
CA1 |
HA11 |
HA12 |
242.6 |
|
OE2 |
CA1 |
HA12 |
CA2 |
125.3 |
|
OE2 |
CA1 |
HA12 |
HA11 |
242.7 |
|
HA12 |
CA1 |
CA2 |
HA21 |
79.6 |
|
HA12 |
CA1 |
CA2 |
HA22 |
330.1 |
|
CA2 |
CA1 |
HA12 |
HA11 |
117.4 |
|
C6 |
C1 |
NA3 |
HNA1 |
130.7 |
|
NA3 |
C1 |
C6 |
C2 |
179.7 |
|
C6 |
C1 |
C2 |
C3 |
359.8 |
|
C6 |
C1 |
C2 |
N2 |
179.6 |
|
C5 |
C6 |
C1 |
H6 |
180.0 |
|
C1 |
C6 |
C5 |
C4 |
359.0 |
|
C1 |
C6 |
C5 |
H5 |
178.9 |
|
C2 |
C1 |
NA3 |
HNA1 |
310.4 |
|
NA3 |
C1 |
C2 |
C6 |
180.3 |
|
C2 |
C1 |
C6 |
C5 |
0.9 |
|
C2 |
C1 |
C6 |
H6 |
180.9 |
|
C4 |
C3 |
C2 |
C1 |
359.6 |
|
C1 |
C2 |
C3 |
H3 |
179.6 |
|
C3 |
C2 |
C1 |
N2 |
180.2 |
|
C1 |
C2 |
N2 |
O2A |
0.8 |
|
C1 |
C2 |
N2 |
O2B |
180.6 |
|
C5 |
C6 |
C1 |
C2 |
0.9 |
|
C1 |
C6 |
C5 |
H6 |
180.0 |
|
C4 |
C5 |
C6 |
H5 |
180.0 |
|
C6 |
C5 |
C4 |
C3 |
0.4 |
|
C6 |
C5 |
C4 |
N4 |
180.1 |
|
H6 |
C6 |
C1 |
C2 |
180.9 |
|
C1 |
C6 |
H6 |
C5 |
180.0 |
|
H6 |
C6 |
C5 |
C4 |
179.0 |
|
H6 |
C6 |
C5 |
H5 |
358.9 |
|
C4 |
C5 |
C6 |
H6 |
179.0 |
|
C6 |
C5 |
C4 |
H5 |
180.0 |
|
C3 |
C4 |
C5 |
N4 |
180.4 |
|
C5 |
C4 |
C3 |
C2 |
0.3 |
|
C5 |
C4 |
C3 |
H3 |
180.3 |
|
C5 |
C4 |
N4 |
O4A |
180.3 |
|
C5 |
C4 |
N4 |
O4B |
0.6 |
|
H5 |
C5 |
C6 |
H6 |
358.9 |
|
C6 |
C5 |
H5 |
C4 |
180.0 |
|
H5 |
C5 |
C4 |
C3 |
180.5 |
|
H5 |
C5 |
C4 |
N4 |
0.1 |
|
C1 |
C2 |
C3 |
C4 |
359.6 |
|
C3 |
C4 |
C5 |
H5 |
180.5 |
|
C5 |
C4 |
C3 |
N4 |
179.6 |
|
C3 |
C4 |
N4 |
O4A |
360.0 |
|
C3 |
C4 |
N4 |
O4B |
180.3 |
|
C2 |
C3 |
C4 |
H3 |
180.0 |
|
C4 |
C3 |
C2 |
N2 |
179.8 |
|
N4 |
C4 |
C5 |
H5 |
0.1 |
|
C5 |
C4 |
N4 |
C3 |
180.4 |
|
N4 |
C4 |
C3 |
C2 |
180.6 |
|
N4 |
C4 |
C3 |
H3 |
0.6 |
|
O4A |
N4 |
C4 |
O4B |
179.7 |
|
C1 |
C2 |
C3 |
N2 |
179.8 |
|
C2 |
C3 |
C4 |
N4 |
180.6 |
|
C4 |
C3 |
C2 |
H3 |
180.0 |
|
C3 |
C2 |
N2 |
O2A |
180.6 |
|
C3 |
C2 |
N2 |
O2B |
0.4 |
|
H3 |
C3 |
C4 |
N4 |
0.6 |
|
C4 |
C3 |
H3 |
C2 |
180.0 |
|
H3 |
C3 |
C2 |
N2 |
359.8 |
|
C1 |
C2 |
N2 |
C3 |
180.2 |
|
N2 |
C2 |
C3 |
H3 |
359.8 |
|
O2A |
N2 |
C2 |
O2B |
180.2 |
|
C4 |
N4 |
O4A |
O4B |
180.3 |
|
C4 |
N4 |
O4B |
O4A |
179.7 |
|
C2 |
N2 |
O2A |
O2B |
179.8 |
|
C2 |
N2 |
O2B |
O2A |
180.2 |
|