PDB Chemical Component DAC

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for DAC

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 O1 1.228 1.217
C1 C2 1.377 1.471
C1 S 1.770 1.762
C2 C3 1.354 1.330
C2 H2 1.104 1.079
C3 C4 1.522 1.507
C3 H3 1.103 1.080
C4 C5 1.516 1.530
C4 H41 1.115 1.090
C4 H42 1.115 1.090
C5 C6 1.515 1.529
C5 H51 1.115 1.089
C5 H52 1.114 1.090
C6 C7 1.532 1.530
C6 H61 1.114 1.090
C6 H62 1.115 1.090
C7 C8 1.511 1.531
C7 H71 1.115 1.089
C7 H72 1.115 1.090
C8 C9 1.505 1.530
C8 H81 1.115 1.089
C8 H82 1.114 1.090
C9 C10 1.484 1.530
C9 H91 1.115 1.090
C9 H92 1.116 1.090
C10 H101 1.115 1.090
C10 H102 1.115 1.089
C10 H103 1.115 1.090
S C1' 1.782 1.810
C1' C2' 1.489 1.530
C1' H1'1 1.114 1.090
C1' H1'2 1.115 1.089
C2' N3' 1.455 1.465
C2' H2'1 1.116 1.090
C2' H2'2 1.115 1.089
N3' C4' 1.326 1.347
N3' HN' 1.020 0.970
C4' O4' 1.237 1.213
C4' C5' 1.494 1.507
C5' H5'1 1.115 1.090
C5' H5'2 1.114 1.090
C5' H5'3 1.116 1.089

Bond Angles for DAC

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1 C1 C2 125.6 120.0
O1 C1 S 122.8 120.0
C2 C1 S 111.5 120.0
C1 C2 C3 126.3 120.0
C1 C2 H2 117.8 120.0
C1 S C1' 99.6 100.0
C3 C2 H2 115.9 120.0
C2 C3 C4 119.6 120.0
C2 C3 H3 114.5 120.0
C4 C3 H3 126.0 120.0
C3 C4 C5 113.5 109.5
C3 C4 H41 110.7 109.5
C3 C4 H42 110.7 109.5
C5 C4 H41 110.8 109.5
C5 C4 H42 110.8 109.4
C4 C5 C6 111.8 109.5
C4 C5 H51 111.3 109.5
C4 C5 H52 111.3 109.5
H41 C4 H42 99.5 109.5
C6 C5 H51 111.3 109.5
C6 C5 H52 111.4 109.4
C5 C6 C7 111.0 109.5
C5 C6 H61 111.6 109.5
C5 C6 H62 111.6 109.5
H51 C5 H52 99.1 109.4
C7 C6 H61 111.7 109.5
C7 C6 H62 111.6 109.4
C6 C7 C8 112.5 109.5
C6 C7 H71 111.1 109.6
C6 C7 H72 111.0 109.5
H61 C6 H62 98.7 109.4
C8 C7 H71 111.1 109.4
C8 C7 H72 111.1 109.4
C7 C8 C9 109.7 109.5
C7 C8 H81 112.1 109.5
C7 C8 H82 112.1 109.4
H71 C7 H72 99.2 109.4
C9 C8 H81 112.2 109.5
C9 C8 H82 112.2 109.5
C8 C9 C10 111.0 109.5
C8 C9 H91 111.6 109.5
C8 C9 H92 111.6 109.4
H81 C8 H82 98.3 109.4
C10 C9 H91 111.7 109.5
C10 C9 H92 111.7 109.5
C9 C10 H101 111.0 109.5
C9 C10 H102 111.6 109.5
C9 C10 H103 111.6 109.4
H91 C9 H92 98.7 109.5
H101 C10 H102 111.7 109.5
H101 C10 H103 111.7 109.5
H102 C10 H103 98.7 109.5
S C1' C2' 109.8 109.4
S C1' H1'1 112.1 109.5
S C1' H1'2 112.1 109.5
C2' C1' H1'1 112.1 109.5
C2' C1' H1'2 112.1 109.5
C1' C2' N3' 111.5 109.4
C1' C2' H2'1 111.4 109.5
C1' C2' H2'2 111.5 109.5
H1'1 C1' H1'2 98.3 109.4
N3' C2' H2'1 111.4 109.5
N3' C2' H2'2 111.5 109.4
C2' N3' C4' 123.1 120.0
C2' N3' HN' 123.4 120.0
H2'1 C2' H2'2 98.9 109.5
C4' N3' HN' 113.6 120.0
N3' C4' O4' 122.0 119.9
N3' C4' C5' 115.9 120.1
O4' C4' C5' 122.1 120.0
C4' C5' H5'1 115.9 109.5
C4' C5' H5'2 109.9 109.5
C4' C5' H5'3 109.9 109.4
H5'1 C5' H5'2 109.9 109.5
H5'1 C5' H5'3 109.9 109.5
H5'2 C5' H5'3 100.3 109.5

Torsion Angles for DAC

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 C1 O1 S 184.2 179.9
O1 C1 C2 C3 327.6 6.5
O1 C1 C2 H2 147.6 186.4
O1 C1 S C1' 5.1 360.0
O1 C1 C2 S 176.2 180.1
C2 C1 S C1' 181.4 180.1
C3 C2 C1 H2 180.0 180.0
C1 C2 C3 C4 358.2 15.0
C1 C2 C3 H3 178.2 195.0
O1 C1 S C2 183.7 179.9
S C1 C2 C3 151.4 186.4
S C1 C2 H2 331.4 6.3
C1 S C1' C2' 219.4 180.0
C1 S C1' H1'1 344.7 300.0
C1 S C1' H1'2 94.2 60.0
C3 C2 C1 S 151.4 186.4
C1 C2 C3 H2 180.0 180.0
C4 C3 C2 H3 179.9 180.0
C2 C3 C4 C5 99.2 141.6
C2 C3 C4 H41 224.6 21.5
C2 C3 C4 H42 333.9 261.5
H2 C2 C1 S 331.4 6.3
C1 C2 H2 C3 180.0 180.0
H2 C2 C3 C4 178.1 195.1
H2 C2 C3 H3 358.2 15.1
C4 C3 C2 H2 178.1 195.1
C2 C3 C4 H3 180.1 180.0
C5 C4 C3 H41 234.7 120.0
C5 C4 C3 H42 125.3 240.1
C3 C4 C5 C6 186.6 180.0
C3 C4 C5 H51 311.8 59.9
C3 C4 C5 H52 61.3 300.0
H41 C4 C3 H42 250.6 120.0
H3 C3 C2 H2 358.2 15.1
C2 C3 H3 C4 179.9 180.0
H3 C3 C4 C5 279.2 321.6
H3 C3 C4 H41 44.5 201.5
H3 C3 C4 H42 153.9 81.5
C5 C4 C3 H3 279.2 321.6
C3 C4 C5 H41 125.3 240.0
C3 C4 C5 H42 234.8 120.0
H41 C4 C5 H42 109.4 240.0
C6 C5 C4 H51 234.8 120.1
C6 C5 C4 H52 125.3 240.0
C4 C5 C6 C7 160.6 180.0
C4 C5 C6 H61 285.9 59.9
C4 C5 C6 H62 35.3 299.9
H51 C5 C4 H52 250.5 120.0
H41 C4 C3 H3 44.5 201.5
C3 C4 H41 C5 233.2 120.0
C3 C4 H41 H42 116.5 240.0
C5 C4 H41 H42 243.4 120.0
H41 C4 C5 C6 61.3 300.0
H41 C4 C5 H51 186.5 180.0
H41 C4 C5 H52 296.0 60.0
H42 C4 C3 H3 153.9 81.5
C3 C4 H42 C5 126.8 240.0
C3 C4 H42 H41 243.4 120.0
C5 C4 H42 H41 116.7 240.0
H42 C4 C5 C6 311.8 60.0
H42 C4 C5 H51 77.1 300.0
H42 C4 C5 H52 186.5 180.0
C6 C5 C4 H41 61.3 300.0
C6 C5 C4 H42 311.8 60.0
C4 C5 C6 H51 125.2 239.9
C4 C5 C6 H52 234.7 120.0
H51 C5 C6 H52 109.5 240.1
C7 C6 C5 H61 234.7 120.1
C7 C6 C5 H62 125.3 240.1
C5 C6 C7 C8 64.9 180.0
C5 C6 C7 H71 190.2 60.0
C5 C6 C7 H72 299.6 300.0
H61 C6 C5 H62 250.6 120.0
H51 C5 C4 H41 186.5 180.0
H51 C5 C4 H42 77.1 300.0
C4 C5 H51 C6 234.5 120.1
C4 C5 H51 H52 117.2 240.0
C6 C5 H51 H52 242.7 119.9
H51 C5 C6 C7 35.4 300.1
H51 C5 C6 H61 160.7 180.0
H51 C5 C6 H62 270.1 60.0
H52 C5 C4 H41 296.0 60.0
H52 C5 C4 H42 186.5 180.0
C4 C5 H52 C6 125.5 240.0
C4 C5 H52 H51 242.8 120.0
C6 C5 H52 H51 117.3 240.1
H52 C5 C6 C7 285.8 60.0
H52 C5 C6 H61 51.2 299.9
H52 C5 C6 H62 160.6 179.9
C7 C6 C5 H51 35.4 300.1
C7 C6 C5 H52 285.8 60.0
C5 C6 C7 H61 125.3 239.9
C5 C6 C7 H62 234.8 120.0
H61 C6 C7 H62 109.5 240.1
C8 C7 C6 H71 234.7 120.0
C8 C7 C6 H72 125.3 240.0
C6 C7 C8 C9 176.1 180.0
C6 C7 C8 H81 301.4 59.9
C6 C7 C8 H82 50.9 300.0
H71 C7 C6 H72 250.6 120.0
H61 C6 C5 H51 160.7 180.0
H61 C6 C5 H52 51.2 299.9
C5 C6 H61 C7 235.1 120.1
C5 C6 H61 H62 117.5 240.0
C7 C6 H61 H62 242.4 119.9
H61 C6 C7 C8 299.6 300.1
H61 C6 C7 H71 64.9 180.1
H61 C6 C7 H72 174.3 60.1
H62 C6 C5 H51 270.1 60.0
H62 C6 C5 H52 160.6 179.9
C5 C6 H62 C7 124.9 240.0
C5 C6 H62 H61 242.5 120.1
C7 C6 H62 H61 117.6 240.0
H62 C6 C7 C8 190.2 60.1
H62 C6 C7 H71 315.5 300.0
H62 C6 C7 H72 64.9 180.0
C8 C7 C6 H61 299.6 300.1
C8 C7 C6 H62 190.2 60.1
C6 C7 C8 H71 125.3 239.9
C6 C7 C8 H72 234.8 120.0
H71 C7 C8 H72 109.5 240.1
C9 C8 C7 H81 234.7 120.1
C9 C8 C7 H82 125.3 240.0
C7 C8 C9 C10 186.5 180.0
C7 C8 C9 H91 311.8 59.9
C7 C8 C9 H92 61.2 299.9
H81 C8 C7 H82 250.5 119.9
H71 C7 C6 H61 64.9 180.1
H71 C7 C6 H62 315.5 300.0
C6 C7 H71 C8 233.9 120.1
C6 C7 H71 H72 116.9 240.0
C8 C7 H71 H72 243.0 119.9
H71 C7 C8 C9 50.9 300.1
H71 C7 C8 H81 176.1 180.0
H71 C7 C8 H82 285.6 60.1
H72 C7 C6 H61 174.3 60.1
H72 C7 C6 H62 64.9 180.0
C6 C7 H72 C8 126.1 240.0
C6 C7 H72 H71 243.1 120.1
C8 C7 H72 H71 117.0 240.1
H72 C7 C8 C9 301.4 60.0
H72 C7 C8 H81 66.6 299.9
H72 C7 C8 H82 176.1 180.0
C9 C8 C7 H71 50.9 300.1
C9 C8 C7 H72 301.4 60.0
C7 C8 C9 H81 125.2 239.9
C7 C8 C9 H82 234.8 120.0
H81 C8 C9 H82 109.6 240.0
C10 C9 C8 H91 234.7 120.1
C10 C9 C8 H92 125.3 240.0
C8 C9 C10 H101 180.0 180.0
C8 C9 C10 H102 305.3 300.0
C8 C9 C10 H103 54.7 60.0
H91 C9 C8 H92 250.6 120.0
H81 C8 C7 H71 176.1 180.0
H81 C8 C7 H72 66.6 299.9
C7 C8 H81 C9 236.1 120.1
C7 C8 H81 H82 118.0 240.1
C9 C8 H81 H82 241.9 120.0
H81 C8 C9 C10 61.3 300.0
H81 C8 C9 H91 186.6 180.0
H81 C8 C9 H92 296.0 60.0
H82 C8 C7 H71 285.6 60.1
H82 C8 C7 H72 176.1 180.0
C7 C8 H82 C9 123.9 240.0
C7 C8 H82 H81 242.0 119.9
C9 C8 H82 H81 118.1 240.0
H82 C8 C9 C10 311.7 60.0
H82 C8 C9 H91 77.0 300.0
H82 C8 C9 H92 186.4 180.0
C10 C9 C8 H81 61.3 300.0
C10 C9 C8 H82 311.7 60.0
C8 C9 C10 H91 125.3 240.0
C8 C9 C10 H92 234.7 119.9
H91 C9 C10 H92 109.5 239.9
H101 C10 C9 H102 234.7 240.0
H101 C10 C9 H103 125.3 120.0
H102 C10 C9 H103 250.6 240.0
H91 C9 C8 H81 186.6 180.0
H91 C9 C8 H82 77.0 300.0
C8 C9 H91 C10 235.1 120.0
C8 C9 H91 H92 117.5 240.1
C10 C9 H91 H92 242.4 120.0
H91 C9 C10 H101 54.7 300.0
H91 C9 C10 H102 180.0 60.0
H91 C9 C10 H103 289.4 180.0
H92 C9 C8 H81 296.0 60.0
H92 C9 C8 H82 186.4 180.0
C8 C9 H92 C10 124.9 240.0
C8 C9 H92 H91 242.5 119.9
C10 C9 H92 H91 117.6 239.9
H92 C9 C10 H101 305.3 60.0
H92 C9 C10 H102 70.5 180.1
H92 C9 C10 H103 180.0 300.0
H101 C10 C9 H91 54.7 300.0
H101 C10 C9 H92 305.3 60.0
C9 C10 H101 H102 125.2 120.0
C9 C10 H101 H103 234.7 240.0
H102 C10 H101 H103 109.5 120.0
H102 C10 C9 H91 180.0 60.0
H102 C10 C9 H92 70.5 180.1
C9 C10 H102 H101 235.1 240.0
C9 C10 H102 H103 117.5 120.0
H101 C10 H102 H103 242.4 240.0
H103 C10 C9 H91 289.4 180.0
H103 C10 C9 H92 180.0 300.0
C9 C10 H103 H101 124.9 120.0
C9 C10 H103 H102 242.5 240.0
H101 C10 H103 H102 117.6 120.0
C2' C1' S H1'1 234.7 240.0
C2' C1' S H1'2 125.2 120.0
S C1' C2' N3' 164.7 180.0
S C1' C2' H2'1 289.9 300.0
S C1' C2' H2'2 39.4 60.1
H1'1 C1' S H1'2 250.5 240.0
S C1' C2' H1'1 125.3 120.0
S C1' C2' H1'2 234.8 240.0
H1'1 C1' C2' H1'2 109.4 120.0
N3' C2' C1' H2'1 234.8 240.0
N3' C2' C1' H2'2 125.3 119.9
C1' C2' N3' C4' 208.9 180.0
C1' C2' N3' HN' 28.9 360.0
H2'1 C2' C1' H2'2 250.5 239.9
S C1' H1'1 C2' 236.0 240.0
S C1' H1'1 H1'2 118.1 120.0
C2' C1' H1'1 H1'2 242.0 240.0
H1'1 C1' C2' N3' 39.4 60.0
H1'1 C1' C2' H2'1 164.6 180.0
H1'1 C1' C2' H2'2 274.1 300.1
S C1' H1'2 C2' 123.9 120.0
S C1' H1'2 H1'1 241.9 240.0
C2' C1' H1'2 H1'1 118.0 120.1
H1'2 C1' C2' N3' 289.9 300.0
H1'2 C1' C2' H2'1 55.2 60.0
H1'2 C1' C2' H2'2 164.7 180.1
N3' C2' C1' H1'1 39.4 60.0
N3' C2' C1' H1'2 289.9 300.0
C1' C2' N3' H2'1 125.2 120.0
C1' C2' N3' H2'2 234.7 240.1
H2'1 C2' N3' H2'2 109.5 120.0
C4' N3' C2' HN' 179.9 180.0
C2' N3' C4' O4' 359.8 0.1
C2' N3' C4' C5' 180.0 180.0
H2'1 C2' C1' H1'1 164.6 180.0
H2'1 C2' C1' H1'2 55.2 60.0
C1' C2' H2'1 N3' 234.7 240.0
C1' C2' H2'1 H2'2 117.4 120.0
N3' C2' H2'1 H2'2 242.6 240.0
H2'1 C2' N3' C4' 83.6 59.9
H2'1 C2' N3' HN' 263.7 240.0
H2'2 C2' C1' H1'1 274.1 300.1
H2'2 C2' C1' H1'2 164.7 180.1
C1' C2' H2'2 N3' 125.3 119.9
C1' C2' H2'2 H2'1 242.7 239.9
N3' C2' H2'2 H2'1 117.3 120.0
H2'2 C2' N3' C4' 334.2 299.9
H2'2 C2' N3' HN' 154.2 119.9
C4' N3' C2' H2'1 83.6 59.9
C4' N3' C2' H2'2 334.2 299.9
C2' N3' C4' HN' 180.1 180.0
O4' C4' N3' C5' 179.8 180.1
N3' C4' C5' H5'1 180.0 180.1
N3' C4' C5' H5'2 305.3 300.1
N3' C4' C5' H5'3 54.7 60.1
HN' N3' C2' H2'1 263.7 240.0
HN' N3' C2' H2'2 154.2 119.9
C2' N3' HN' C4' 179.9 180.0
HN' N3' C4' O4' 179.7 180.0
HN' N3' C4' C5' 359.9 359.9
O4' C4' N3' HN' 179.7 180.0
N3' C4' O4' C5' 180.2 179.9
O4' C4' C5' H5'1 0.1 360.0
O4' C4' C5' H5'2 125.5 120.0
O4' C4' C5' H5'3 234.9 240.0
C5' C4' N3' HN' 359.9 359.9
N3' C4' C5' O4' 179.8 180.1
H5'1 C5' C4' H5'2 234.7 240.0
H5'1 C5' C4' H5'3 125.2 120.0
H5'2 C5' C4' H5'3 250.5 240.0
C4' C5' H5'1 H5'2 125.3 120.0
C4' C5' H5'1 H5'3 234.8 240.1
H5'2 C5' H5'1 H5'3 109.5 120.0
C4' C5' H5'2 H5'1 231.3 240.0
C4' C5' H5'2 H5'3 115.7 119.9
H5'1 C5' H5'2 H5'3 244.3 239.9
C4' C5' H5'3 H5'1 128.6 120.0
C4' C5' H5'3 H5'2 244.3 240.0
H5'1 C5' H5'3 H5'2 115.7 120.0