PDB Chemical Component DAB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for DAB
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.465 |
1.469 |
| N |
H |
1.020 |
1.008 |
| N |
H2 |
1.020 |
1.008 |
| CA |
C |
1.516 |
1.507 |
| CA |
CB |
1.545 |
1.528 |
| CA |
HA |
1.115 |
1.091 |
| C |
O |
1.224 |
1.208 |
| C |
OXT |
1.341 |
1.342 |
| CB |
CG |
1.539 |
1.530 |
| CB |
HB2 |
1.115 |
1.089 |
| CB |
HB3 |
1.115 |
1.090 |
| CG |
ND |
1.416 |
1.469 |
| CG |
HG2 |
1.115 |
1.090 |
| CG |
HG3 |
1.114 |
1.090 |
| ND |
HD1 |
1.019 |
1.008 |
| ND |
HD2 |
1.020 |
1.008 |
| OXT |
HXT |
0.951 |
0.967 |
Bond Angles for DAB
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
112.9 |
106.7 |
| CA |
N |
H2 |
111.0 |
106.7 |
| N |
CA |
C |
112.9 |
109.5 |
| N |
CA |
CB |
109.0 |
109.5 |
| N |
CA |
HA |
106.3 |
109.4 |
| H |
N |
H2 |
111.0 |
106.7 |
| C |
CA |
CB |
105.6 |
109.5 |
| C |
CA |
HA |
109.6 |
109.4 |
| CA |
C |
O |
120.8 |
120.0 |
| CA |
C |
OXT |
115.2 |
120.0 |
| CB |
CA |
HA |
113.5 |
109.5 |
| CA |
CB |
CG |
106.0 |
109.5 |
| CA |
CB |
HB2 |
113.5 |
109.5 |
| CA |
CB |
HB3 |
113.5 |
109.5 |
| O |
C |
OXT |
123.9 |
120.0 |
| C |
OXT |
HXT |
115.2 |
120.0 |
| CG |
CB |
HB2 |
113.5 |
109.4 |
| CG |
CB |
HB3 |
113.5 |
109.5 |
| CB |
CG |
ND |
117.3 |
109.5 |
| CB |
CG |
HG2 |
109.3 |
109.5 |
| CB |
CG |
HG3 |
109.4 |
109.5 |
| HB2 |
CB |
HB3 |
97.0 |
109.5 |
| ND |
CG |
HG2 |
109.4 |
109.4 |
| ND |
CG |
HG3 |
109.4 |
109.5 |
| CG |
ND |
HD1 |
117.3 |
106.8 |
| CG |
ND |
HD2 |
109.4 |
106.7 |
| HG2 |
CG |
HG3 |
100.8 |
109.4 |
| HD1 |
ND |
HD2 |
109.4 |
106.7 |
Torsion Angles for DAB
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.3 |
113.8 |
| C |
CA |
N |
CB |
117.1 |
120.1 |
| C |
CA |
N |
HA |
239.8 |
240.1 |
| N |
CA |
C |
O |
318.9 |
329.9 |
| N |
CA |
C |
OXT |
135.6 |
150.0 |
| CB |
CA |
N |
HA |
122.7 |
120.0 |
| N |
CA |
CB |
CG |
287.0 |
300.0 |
| N |
CA |
CB |
HB2 |
52.3 |
180.0 |
| N |
CA |
CB |
HB3 |
161.7 |
60.0 |
| CA |
N |
H |
H2 |
234.7 |
246.2 |
| H |
N |
CA |
C |
180.0 |
173.9 |
| H |
N |
CA |
CB |
63.0 |
53.8 |
| H |
N |
CA |
HA |
300.3 |
293.8 |
| CA |
N |
H2 |
H |
126.4 |
113.8 |
| H2 |
N |
CA |
C |
54.7 |
60.0 |
| H2 |
N |
CA |
CB |
297.7 |
300.0 |
| H2 |
N |
CA |
HA |
175.0 |
180.0 |
| C |
CA |
N |
H |
180.0 |
173.9 |
| C |
CA |
N |
H2 |
54.7 |
60.0 |
| N |
CA |
C |
CB |
241.0 |
239.9 |
| N |
CA |
C |
HA |
118.3 |
119.9 |
| CB |
CA |
C |
HA |
237.3 |
240.0 |
| C |
CA |
CB |
CG |
165.5 |
180.0 |
| C |
CA |
CB |
HB2 |
290.7 |
60.0 |
| C |
CA |
CB |
HB3 |
40.2 |
300.0 |
| O |
C |
CA |
OXT |
183.2 |
179.9 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| CB |
CA |
N |
H |
63.0 |
53.8 |
| CB |
CA |
N |
H2 |
297.7 |
300.0 |
| N |
CA |
CB |
C |
121.6 |
120.0 |
| N |
CA |
CB |
HA |
241.7 |
240.0 |
| C |
CA |
CB |
HA |
120.2 |
120.0 |
| CB |
CA |
C |
O |
77.9 |
90.0 |
| CB |
CA |
C |
OXT |
254.7 |
270.0 |
| CG |
CB |
CA |
HB2 |
234.7 |
120.0 |
| CG |
CB |
CA |
HB3 |
125.3 |
240.0 |
| CA |
CB |
CG |
ND |
278.5 |
180.0 |
| CA |
CB |
CG |
HG2 |
43.8 |
60.0 |
| CA |
CB |
CG |
HG3 |
153.2 |
300.1 |
| HB2 |
CB |
CA |
HB3 |
250.6 |
120.0 |
| HA |
CA |
N |
H |
300.3 |
293.8 |
| HA |
CA |
N |
H2 |
175.0 |
180.0 |
| N |
CA |
HA |
C |
237.7 |
240.1 |
| N |
CA |
HA |
CB |
119.8 |
120.0 |
| C |
CA |
HA |
CB |
242.1 |
240.0 |
| HA |
CA |
C |
O |
200.5 |
210.0 |
| HA |
CA |
C |
OXT |
17.3 |
30.1 |
| HA |
CA |
CB |
CG |
45.3 |
60.0 |
| HA |
CA |
CB |
HB2 |
170.6 |
300.0 |
| HA |
CA |
CB |
HB3 |
280.0 |
180.0 |
| O |
C |
CA |
CB |
77.9 |
90.0 |
| O |
C |
CA |
HA |
200.5 |
210.0 |
| CA |
C |
O |
OXT |
176.5 |
180.1 |
| O |
C |
OXT |
HXT |
356.7 |
0.1 |
| OXT |
C |
CA |
CB |
254.7 |
270.0 |
| OXT |
C |
CA |
HA |
17.3 |
30.1 |
| CA |
C |
OXT |
O |
183.3 |
179.9 |
| CG |
CB |
CA |
HA |
45.3 |
60.0 |
| CA |
CB |
CG |
HB2 |
125.3 |
240.0 |
| CA |
CB |
CG |
HB3 |
234.7 |
120.0 |
| HB2 |
CB |
CG |
HB3 |
109.5 |
240.0 |
| ND |
CG |
CB |
HG2 |
234.7 |
120.0 |
| ND |
CG |
CB |
HG3 |
125.3 |
239.9 |
| CB |
CG |
ND |
HD1 |
180.0 |
180.0 |
| CB |
CG |
ND |
HD2 |
54.7 |
293.8 |
| HG2 |
CG |
CB |
HG3 |
250.5 |
119.9 |
| HB2 |
CB |
CA |
HA |
170.6 |
300.0 |
| CA |
CB |
HB2 |
CG |
238.8 |
120.0 |
| CA |
CB |
HB2 |
HB3 |
119.4 |
240.0 |
| CG |
CB |
HB2 |
HB3 |
240.6 |
120.0 |
| HB2 |
CB |
CG |
ND |
153.2 |
300.0 |
| HB2 |
CB |
CG |
HG2 |
278.5 |
180.0 |
| HB2 |
CB |
CG |
HG3 |
28.0 |
60.1 |
| HB3 |
CB |
CA |
HA |
280.0 |
180.0 |
| CA |
CB |
HB3 |
CG |
121.2 |
240.0 |
| CA |
CB |
HB3 |
HB2 |
240.6 |
120.0 |
| CG |
CB |
HB3 |
HB2 |
119.4 |
240.0 |
| HB3 |
CB |
CG |
ND |
43.8 |
60.0 |
| HB3 |
CB |
CG |
HG2 |
169.0 |
300.0 |
| HB3 |
CB |
CG |
HG3 |
278.5 |
180.0 |
| ND |
CG |
CB |
HB2 |
153.2 |
300.0 |
| ND |
CG |
CB |
HB3 |
43.8 |
60.0 |
| CB |
CG |
ND |
HG2 |
125.2 |
240.0 |
| CB |
CG |
ND |
HG3 |
234.7 |
120.1 |
| HG2 |
CG |
ND |
HG3 |
109.5 |
240.1 |
| HD1 |
ND |
CG |
HD2 |
125.3 |
246.2 |
| HG2 |
CG |
CB |
HB2 |
278.5 |
180.0 |
| HG2 |
CG |
CB |
HB3 |
169.0 |
300.0 |
| CB |
CG |
HG2 |
ND |
230.3 |
120.0 |
| CB |
CG |
HG2 |
HG3 |
115.1 |
240.0 |
| ND |
CG |
HG2 |
HG3 |
244.8 |
120.0 |
| HG2 |
CG |
ND |
HD1 |
54.8 |
300.0 |
| HG2 |
CG |
ND |
HD2 |
289.5 |
53.9 |
| HG3 |
CG |
CB |
HB2 |
28.0 |
60.1 |
| HG3 |
CG |
CB |
HB3 |
278.5 |
180.0 |
| CB |
CG |
HG3 |
ND |
129.7 |
239.9 |
| CB |
CG |
HG3 |
HG2 |
244.9 |
120.0 |
| ND |
CG |
HG3 |
HG2 |
115.2 |
240.1 |
| HG3 |
CG |
ND |
HD1 |
305.2 |
59.9 |
| HG3 |
CG |
ND |
HD2 |
179.9 |
173.8 |
| HD1 |
ND |
CG |
HG2 |
54.8 |
300.0 |
| HD1 |
ND |
CG |
HG3 |
305.2 |
59.9 |
| CG |
ND |
HD1 |
HD2 |
234.7 |
113.8 |
| HD2 |
ND |
CG |
HG2 |
289.5 |
53.9 |
| HD2 |
ND |
CG |
HG3 |
179.9 |
173.8 |
| CG |
ND |
HD2 |
HD1 |
129.7 |
246.1 |